Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000452

Physical Location & Seq

Genomic Coordinates Reverse (-)

6400670 .. 6401930

Gene Structure 1261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0040800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTGTGCTAGATTTTGGTGGGGGAGTACAGATGATAAGCGTAAAATACATTGGAAGAAATGGGATGATTTGTGTCATGCCAAGGAAGAGGGTAGCATGGGTTTTCGGAGCTTATCAGAATTTAATTCTTCGATGTTGGCGAAGCAAGAGTGGCGAGTTGTCTCTAAACTGGATACTCTTGTGGTACAATGGTACAAAGCTAGATATTATCCTGATGGTTCTGTTTGGAATGCAGAAGAACATGCTACTCCTTATTCTTGGCGTAACATTTTTTCTACTCGAAATTTATTGATTGAAGGTACTCATTGGCAAATTGGGAATGGAAATAATGTTCTCGTATTGCGGGATTCTTGGATTCCTAATACTATTACTCATAAACCACAGCTGTTGGGACCGGTGCAAGATAATTTGGCCAAGGTGAGTCAGTTGATTATTCCTCCTAATTCTTGGGATGAGCATAAAATTCGTTCCACTTTTATACACTCAGATGCAGAAGCTATTCTAGAAATTCCTTTGAGTGCTAGAAGTCCGGATGATAGATTGACTTGGCATTTGGGGAAACAAGGTATGTTTACTGTCAAATCTGGTTATCAAAAACAAACTTTGCTCAACTGTTGCATTTTATTTGGGGAATTTGGAAAGAAATTTGATAGGGAATCTAAGAAAATTTTGAAGTGGCAGCGCCCTCCTGTGGGTTGGTTGAAGGTGAATTTTGATGGAGCTTTTAATCCGAGGTTTAGCAAAGCAGCGATTGGTTTCTTAGTTCGTGACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

258

Amino Acids

30.07

Weight (kDa)

9.37

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000452)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	529
AciI	CCGC	1 cut(s)	343
AcoI	YGGCCR	1 cut(s)	411
AcsI	RAATTY	8 cut(s)	119, 283, 462, 507, 632, 644, 666, 709
AfaI	GTAC	4 cut(s)	28, 186, 194, 301
AfiI	CCNNNNNNNGG	2 cut(s)	691, 692
AgeI	ACCGGT	1 cut(s)	394
AgsI	TTSAA	3 cut(s)	296, 673, 703
AloI	GAACNNNNNNTCC	2 cut(s)	315, 347
AluBI	AGCT	5 cut(s)	111, 200, 385, 497, 722
AluI	AGCT	5 cut(s)	111, 200, 385, 497, 722
Alw26I	GTCTC	1 cut(s)	166
Aor13HI	TCCGGA	1 cut(s)	529
AoxI	GGCC	1 cut(s)	411
ApeKI	GCWGC	2 cut(s)	679, 746
ApoI	RAATTY	8 cut(s)	119, 283, 462, 507, 632, 644, 666, 709
ArsI	GACNNNNNNTTYG	2 cut(s)	535, 567
AsiGI	ACCGGT	1 cut(s)	394
Asp700I	GAANNNNTTC	1 cut(s)	498
AspLEI	GCGC	1 cut(s)	684
AspS9I	GGNCC	1 cut(s)	392
AsuHPI	GGTGA	2 cut(s)	430, 718
AvaII	GGWCC	1 cut(s)	392
BaeI	ACNNNNGTAYC	4 cut(s)	165, 176, 198, 209
BalI	TGGCCA	1 cut(s)	413
BbvI	GCAGC	2 cut(s)	691, 758
BccI	CCATC	2 cut(s)	209, 710
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BciVI	GTATCC	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	4 cut(s)	9, 201, 503, 522
BfoI	RGCGCY	1 cut(s)	685
BfuI	GTATCC	1 cut(s)	166
BisI	GCNGC	2 cut(s)	680, 747
BlsI	GCNGC	2 cut(s)	681, 748
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	1 cut(s)	393
BmsI	GCATC	1 cut(s)	478
BsaJI	CCNNGG	3 cut(s)	81, 414, 731
BsaWI	WCCGGW	2 cut(s)	394, 529
Bsc4I	CCNNNNNNNGG	2 cut(s)	691, 692
Bse118I	RCCGGY	1 cut(s)	394
Bse1I	ACTGG	1 cut(s)	174
BseAI	TCCGGA	1 cut(s)	529
BseDI	CCNNGG	3 cut(s)	81, 414, 731
BseGI	GGATG	3 cut(s)	70, 457, 538
BseLI	CCNNNNNNNGG	2 cut(s)	691, 692
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	1 cut(s)	174
BseXI	GCAGC	2 cut(s)	691, 758
BshFI	GGCC	1 cut(s)	413
BshTI	ACCGGT	1 cut(s)	394
BsiSI	CCGG	2 cut(s)	395, 530
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	2 cut(s)	691, 692
BsmAI	GTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	405
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	413
Bsp13I	TCCGGA	1 cut(s)	529
BspACI	CCGC	1 cut(s)	343
BspANI	GGCC	1 cut(s)	413
BspCNI	CTCAG	1 cut(s)	497
BspEI	TCCGGA	1 cut(s)	529
BspLI	GGNNCC	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	174
BssAI	RCCGGY	1 cut(s)	394
BssECI	CCNNGG	3 cut(s)	81, 414, 731
BssT1I	CCWWGG	2 cut(s)	81, 414
Bst4CI	ACNGT	2 cut(s)	577, 614
Bst6I	CTCTTC	1 cut(s)	81
BstDEI	CTNAG	3 cut(s)	484, 660, 760
BstF5I	GGATG	3 cut(s)	70, 457, 538
BstH2I	RGCGCY	1 cut(s)	685
BstHHI	GCGC	1 cut(s)	684
BstMAI	GTCTC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNSI	RCATGY	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	691, 758
BsuI	GTATCC	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	413
BtsCI	GGATG	3 cut(s)	70, 457, 538
CfoI	GCGC	1 cut(s)	684
Cfr10I	RCCGGY	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	392
Csp6I	GTAC	4 cut(s)	27, 185, 193, 300
CspAI	ACCGGT	1 cut(s)	394
CspCI	CAANNNNNGTGG	2 cut(s)	369, 404
CviAII	CATG	3 cut(s)	77, 97, 242
CviJI	RGCY	6 cut(s)	111, 200, 385, 413, 497, 722
CviKI_1	RGCY	6 cut(s)	111, 200, 385, 413, 497, 722
CviQI	GTAC	4 cut(s)	27, 185, 193, 300
DdeI	CTNAG	3 cut(s)	484, 660, 760
EaeI	YGGCCR	1 cut(s)	411
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco130I	CCWWGG	2 cut(s)	81, 414
Eco47I	GGWCC	1 cut(s)	392
EcoT14I	CCWWGG	2 cut(s)	81, 414
ErhI	CCWWGG	2 cut(s)	81, 414
FaeI	CATG	3 cut(s)	80, 100, 245
FaiI	YATR	7 cut(s)	78, 98, 243, 375, 459, 479, 569
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	3 cut(s)	76, 96, 241
FauI	CCCGC	1 cut(s)	336
Fnu4HI	GCNGC	2 cut(s)	680, 747
FokI	GGATG	3 cut(s)	77, 464, 545
Fsp4HI	GCNGC	2 cut(s)	680, 747
FspBI	CTAG	4 cut(s)	9, 201, 503, 522
GlaI	GCGC	1 cut(s)	683
GluI	GCNGC	2 cut(s)	680, 747
HaeII	RGCGCY	1 cut(s)	685
HaeIII	GGCC	1 cut(s)	413
HapII	CCGG	2 cut(s)	395, 530
HhaI	GCGC	1 cut(s)	684
Hin1II	CATG	3 cut(s)	80, 100, 245
Hin6I	GCGC	1 cut(s)	682
HinP1I	GCGC	1 cut(s)	682
HinfI	GANTC	4 cut(s)	347, 355, 421, 656
HpaII	CCGG	2 cut(s)	395, 530
HphI	GGTGA	2 cut(s)	430, 718
Hpy166II	GTNNAC	1 cut(s)	573
Hpy188I	TCNGA	4 cut(s)	108, 118, 487, 732
Hpy188III	TCNNGA	4 cut(s)	212, 503, 530, 767
Hpy8I	GTNNAC	1 cut(s)	573
HpyAV	CCTTC	2 cut(s)	290, 697
HpyCH4III	ACNGT	2 cut(s)	577, 614
HpyCH4V	TGCA	4 cut(s)	233, 400, 491, 618
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	3 cut(s)	484, 660, 760
Hsp92II	CATG	3 cut(s)	80, 100, 245
HspAI	GCGC	1 cut(s)	682
Kpn2I	TCCGGA	1 cut(s)	529
LmnI	GCTCC	2 cut(s)	108, 719
LpnPI	CCDG	6 cut(s)	155, 225, 408, 543, 570, 702
Lsp1109I	GCAGC	2 cut(s)	691, 758
LweI	GCATC	1 cut(s)	478
MaeI	CTAG	4 cut(s)	9, 201, 503, 522
MaeIII	GTNAC	2 cut(s)	263, 767
MboII	GAAGA	4 cut(s)	67, 98, 120, 248
MlsI	TGGCCA	1 cut(s)	413
MluNI	TGGCCA	1 cut(s)	413
MlyI	GAGTC	1 cut(s)	430
MnlI	CCTC	4 cut(s)	82, 447, 696, 726
Mox20I	TGGCCA	1 cut(s)	413
MroI	TCCGGA	1 cut(s)	529
MroXI	GAANNNNTTC	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	413
MseI	TTAA	3 cut(s)	123, 726, 775
MslI	CAYNNNNRTG	1 cut(s)	486
Msp20I	TGGCCA	1 cut(s)	413
MspA1I	CMGCKG	1 cut(s)	385
MspI	CCGG	2 cut(s)	395, 530
Mva1269I	GAATGC	1 cut(s)	235
MwoI	GCNNNNNNNGC	1 cut(s)	151
NlaIII	CATG	3 cut(s)	80, 100, 245
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	767
NspI	RCATGY	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	1 cut(s)	137
PctI	GAATGC	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	3 cut(s)	347, 355, 656
PinAI	ACCGGT	1 cut(s)	394
PkrI	GCNGC	2 cut(s)	681, 748
PleI	GAGTC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	393
PspPI	GGNCC	1 cut(s)	392
PvuII	CAGCTG	1 cut(s)	385
RsaI	GTAC	4 cut(s)	28, 186, 194, 301
RsaNI	GTAC	4 cut(s)	27, 185, 193, 300
RseI	CAYNNNNRTG	1 cut(s)	486
SaqAI	TTAA	3 cut(s)	123, 726, 775
SatI	GCNGC	2 cut(s)	680, 747
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	1 cut(s)	430
SfaNI	GCATC	1 cut(s)	478
SinI	GGWCC	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	486
SsiI	CCGC	1 cut(s)	343
SspMI	CTAG	4 cut(s)	9, 201, 503, 522
StyI	CCWWGG	2 cut(s)	81, 414
TaaI	ACNGT	2 cut(s)	577, 614
TaqI	TCGA	2 cut(s)	131, 280
TatI	WGTACW	1 cut(s)	26
TfiI	GAWTC	3 cut(s)	347, 355, 656
Tru1I	TTAA	3 cut(s)	123, 726, 775
Tru9I	TTAA	3 cut(s)	123, 726, 775
TseFI	GTSAC	1 cut(s)	767
TseI	GCWGC	2 cut(s)	679, 746
Tsp45I	GTSAC	1 cut(s)	767
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	8 cut(s)	119, 283, 462, 507, 632, 644, 666, 709
XbaI	TCTAGA	1 cut(s)	502
XceI	RCATGY	1 cut(s)	245
XmnI	GAANNNNTTC	1 cut(s)	498
XspI	CTAG	4 cut(s)	9, 201, 503, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.