Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 38 - 98 | 9.2e-10 | Homeodomain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 41 |
| AclWI | GGATC | 3 cut(s) | 142, 155, 165 |
| AflIII | ACRYGT | 1 cut(s) | 238 |
| AjnI | CCWGG | 1 cut(s) | 116 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 83, 115 |
| AluBI | AGCT | 2 cut(s) | 31, 223 |
| AluI | AGCT | 2 cut(s) | 31, 223 |
| Alw21I | GWGCWC | 1 cut(s) | 201 |
| Alw26I | GTCTC | 1 cut(s) | 221 |
| AlwI | GGATC | 3 cut(s) | 142, 155, 165 |
| Ama87I | CYCGRG | 1 cut(s) | 285 |
| ApeKI | GCWGC | 1 cut(s) | 74 |
| AsuC2I | CCSGG | 1 cut(s) | 79 |
| AvaI | CYCGRG | 1 cut(s) | 285 |
| BaeGI | GKGCMC | 1 cut(s) | 188 |
| BamHI | GGATCC | 1 cut(s) | 147 |
| BanII | GRGCYC | 1 cut(s) | 286 |
| BauI | CACGAG | 1 cut(s) | 206 |
| Bbv12I | GWGCWC | 1 cut(s) | 201 |
| BbvI | GCAGC | 1 cut(s) | 86 |
| BccI | CCATC | 2 cut(s) | 19, 50 |
| BceAI | ACGGC | 1 cut(s) | 96 |
| BciT130I | CCWGG | 1 cut(s) | 118 |
| BcnI | CCSGG | 1 cut(s) | 79 |
| BcoDI | GTCTC | 1 cut(s) | 221 |
| BfmI | CTRYAG | 1 cut(s) | 192 |
| BglII | AGATCT | 1 cut(s) | 210 |
| BisI | GCNGC | 1 cut(s) | 75 |
| BlsI | GCNGC | 1 cut(s) | 76 |
| Bme1390I | CCNGG | 2 cut(s) | 79, 118 |
| BmeT110I | CYCGRG | 1 cut(s) | 285 |
| BmiI | GGNNCC | 4 cut(s) | 6, 126, 149, 269 |
| BmrFI | CCNGG | 2 cut(s) | 79, 118 |
| BpmI | CTGGAG | 2 cut(s) | 117, 203 |
| BpuEI | CTTGAG | 1 cut(s) | 137 |
| BpuMI | CCSGG | 1 cut(s) | 79 |
| Bse1I | ACTGG | 1 cut(s) | 229 |
| BseBI | CCWGG | 1 cut(s) | 118 |
| BseGI | GGATG | 1 cut(s) | 61 |
| BseNI | ACTGG | 1 cut(s) | 229 |
| BseSI | GKGCMC | 1 cut(s) | 188 |
| BseXI | GCAGC | 1 cut(s) | 86 |
| BsiHKAI | GWGCWC | 1 cut(s) | 201 |
| BsiHKCI | CYCGRG | 1 cut(s) | 285 |
| BsiSI | CCGG | 1 cut(s) | 78 |
| BsmAI | GTCTC | 1 cut(s) | 221 |
| BsoBI | CYCGRG | 1 cut(s) | 285 |
| Bsp1286I | GDGCHC | 3 cut(s) | 188, 201, 286 |
| Bsp143I | GATC | 4 cut(s) | 136, 147, 157, 210 |
| BspACI | CCGC | 1 cut(s) | 41 |
| BspLI | GGNNCC | 4 cut(s) | 6, 126, 149, 269 |
| BspPI | GGATC | 3 cut(s) | 142, 155, 165 |
| BsrI | ACTGG | 1 cut(s) | 229 |
| BssMI | GATC | 4 cut(s) | 136, 147, 157, 210 |
| BssSI | CACGAG | 1 cut(s) | 206 |
| Bst2BI | CACGAG | 1 cut(s) | 206 |
| Bst2UI | CCWGG | 1 cut(s) | 118 |
| BstF5I | GGATG | 1 cut(s) | 61 |
| BstKTI | GATC | 4 cut(s) | 139, 150, 160, 213 |
| BstMAI | GTCTC | 1 cut(s) | 221 |
| BstMBI | GATC | 4 cut(s) | 136, 147, 157, 210 |
| BstNI | CCWGG | 1 cut(s) | 118 |
| BstNSI | RCATGY | 1 cut(s) | 242 |
| BstSCI | CCNGG | 2 cut(s) | 77, 116 |
| BstSFI | CTRYAG | 1 cut(s) | 192 |
| BstSLI | GKGCMC | 1 cut(s) | 188 |
| BstV1I | GCAGC | 1 cut(s) | 86 |
| BstX2I | RGATCY | 3 cut(s) | 147, 157, 210 |
| BstYI | RGATCY | 3 cut(s) | 147, 157, 210 |
| BtsCI | GGATG | 1 cut(s) | 61 |
| CviAII | CATG | 1 cut(s) | 239 |
| CviJI | RGCY | 5 cut(s) | 31, 77, 111, 223, 284 |
| CviKI_1 | RGCY | 5 cut(s) | 31, 77, 111, 223, 284 |
| DpnI | GATC | 4 cut(s) | 138, 149, 159, 212 |
| DpnII | GATC | 4 cut(s) | 136, 147, 157, 210 |
| Eco24I | GRGCYC | 1 cut(s) | 286 |
| Eco88I | CYCGRG | 1 cut(s) | 285 |
| EcoRII | CCWGG | 1 cut(s) | 116 |
| EcoT38I | GRGCYC | 1 cut(s) | 286 |
| FaeI | CATG | 1 cut(s) | 242 |
| FaiI | YATR | 2 cut(s) | 234, 240 |
| FatI | CATG | 1 cut(s) | 238 |
| FauI | CCCGC | 1 cut(s) | 48 |
| Fnu4HI | GCNGC | 1 cut(s) | 75 |
| FokI | GGATG | 1 cut(s) | 68 |
| FriOI | GRGCYC | 1 cut(s) | 286 |
| Fsp4HI | GCNGC | 1 cut(s) | 75 |
| GluI | GCNGC | 1 cut(s) | 75 |
| GsuI | CTGGAG | 2 cut(s) | 117, 203 |
| HapII | CCGG | 1 cut(s) | 78 |
| Hin1II | CATG | 1 cut(s) | 242 |
| HpaII | CCGG | 1 cut(s) | 78 |
| Hpy188III | TCNNGA | 4 cut(s) | 134, 206, 271, 287 |
| HpyCH4V | TGCA | 1 cut(s) | 19 |
| Hsp92II | CATG | 1 cut(s) | 242 |
| Kzo9I | GATC | 4 cut(s) | 136, 147, 157, 210 |
| LmnI | GCTCC | 1 cut(s) | 28 |
| LpnPI | CCDG | 9 cut(s) | 88, 91, 103, 130, 147, 233, 242, 265, 284 |
| Lsp1109I | GCAGC | 1 cut(s) | 86 |
| MalI | GATC | 4 cut(s) | 138, 149, 159, 212 |
| MboI | GATC | 4 cut(s) | 136, 147, 157, 210 |
| MflI | RGATCY | 3 cut(s) | 147, 157, 210 |
| MhlI | GDGCHC | 3 cut(s) | 188, 201, 286 |
| MnlI | CCTC | 4 cut(s) | 46, 53, 161, 238 |
| MseI | TTAA | 1 cut(s) | 180 |
| MspA1I | CMGCKG | 1 cut(s) | 223 |
| MspI | CCGG | 1 cut(s) | 78 |
| MspR9I | CCNGG | 2 cut(s) | 79, 118 |
| MvaI | CCWGG | 1 cut(s) | 118 |
| NciI | CCSGG | 1 cut(s) | 79 |
| NdeII | GATC | 4 cut(s) | 136, 147, 157, 210 |
| NlaIII | CATG | 1 cut(s) | 242 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 126, 149, 269 |
| NspI | RCATGY | 1 cut(s) | 242 |
| PaeR7I | CTCGAG | 1 cut(s) | 285 |
| PciI | ACATGT | 1 cut(s) | 238 |
| PkrI | GCNGC | 1 cut(s) | 76 |
| PscI | ACATGT | 1 cut(s) | 238 |
| Psp6I | CCWGG | 1 cut(s) | 116 |
| PspGI | CCWGG | 1 cut(s) | 116 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 126, 149, 269 |
| PsuI | RGATCY | 3 cut(s) | 147, 157, 210 |
| PvuII | CAGCTG | 1 cut(s) | 223 |
| SaqAI | TTAA | 1 cut(s) | 180 |
| SatI | GCNGC | 1 cut(s) | 75 |
| Sau3AI | GATC | 4 cut(s) | 136, 147, 157, 210 |
| ScrFI | CCNGG | 2 cut(s) | 79, 118 |
| SduI | GDGCHC | 3 cut(s) | 188, 201, 286 |
| SetI | ASST | 3 cut(s) | 33, 122, 225 |
| SfcI | CTRYAG | 1 cut(s) | 192 |
| Sfr274I | CTCGAG | 1 cut(s) | 285 |
| SlaI | CTCGAG | 1 cut(s) | 285 |
| SmlI | CTYRAG | 2 cut(s) | 152, 285 |
| SmoI | CTYRAG | 2 cut(s) | 152, 285 |
| SsiI | CCGC | 1 cut(s) | 41 |
| StyD4I | CCNGG | 2 cut(s) | 77, 116 |
| TaqI | TCGA | 2 cut(s) | 51, 286 |
| Tru1I | TTAA | 1 cut(s) | 180 |
| Tru9I | TTAA | 1 cut(s) | 180 |
| TseI | GCWGC | 1 cut(s) | 74 |
| XceI | RCATGY | 1 cut(s) | 242 |
| XhoI | CTCGAG | 1 cut(s) | 285 |