Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 40, 401, 404, 665 |
| AclI | AACGTT | 1 cut(s) | 479 |
| AcsI | RAATTY | 4 cut(s) | 47, 254, 678, 708 |
| AcuI | CTGAAG | 1 cut(s) | 447 |
| AfaI | GTAC | 4 cut(s) | 17, 458, 686, 883 |
| AflIII | ACRYGT | 1 cut(s) | 700 |
| AgsI | TTSAA | 7 cut(s) | 286, 391, 419, 649, 713, 833, 908 |
| AluBI | AGCT | 9 cut(s) | 172, 425, 433, 445, 562, 619, 783, 836, 878 |
| AluI | AGCT | 9 cut(s) | 172, 425, 433, 445, 562, 619, 783, 836, 878 |
| Alw26I | GTCTC | 1 cut(s) | 406 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 619 |
| ApeKI | GCWGC | 1 cut(s) | 22 |
| ApoI | RAATTY | 4 cut(s) | 47, 254, 678, 708 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 518, 550 |
| AspS9I | GGNCC | 4 cut(s) | 101, 150, 372, 847 |
| AsuHPI | GGTGA | 1 cut(s) | 752 |
| AvaII | GGWCC | 4 cut(s) | 101, 150, 372, 847 |
| BaeGI | GKGCMC | 1 cut(s) | 226 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 873, 906 |
| BbsI | GAAGAC | 1 cut(s) | 293 |
| BbvCI | CCTCAGC | 1 cut(s) | 837 |
| BbvI | GCAGC | 1 cut(s) | 9 |
| BccI | CCATC | 3 cut(s) | 401, 622, 731 |
| BcoDI | GTCTC | 1 cut(s) | 406 |
| BisI | GCNGC | 3 cut(s) | 23, 41, 402 |
| BlpI | GCTNAGC | 1 cut(s) | 344 |
| BlsI | GCNGC | 3 cut(s) | 24, 42, 403 |
| BmcAI | AGTACT | 1 cut(s) | 458 |
| Bme18I | GGWCC | 4 cut(s) | 101, 150, 372, 847 |
| BmgT120I | GGNCC | 4 cut(s) | 101, 150, 372, 847 |
| BmiI | GGNNCC | 3 cut(s) | 102, 151, 373 |
| BmsI | GCATC | 1 cut(s) | 330 |
| BpiI | GAAGAC | 1 cut(s) | 293 |
| Bpu10I | CCTNAGC | 1 cut(s) | 837 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 344 |
| BpuEI | CTTGAG | 3 cut(s) | 152, 314, 890 |
| BsaWI | WCCGGW | 1 cut(s) | 53 |
| Bse118I | RCCGGY | 1 cut(s) | 25 |
| Bse1I | ACTGG | 2 cut(s) | 75, 314 |
| Bse3DI | GCAATG | 1 cut(s) | 237 |
| BseGI | GGATG | 2 cut(s) | 345, 412 |
| BseMI | GCAATG | 1 cut(s) | 237 |
| BseMII | CTCAG | 3 cut(s) | 335, 828, 913 |
| BseNI | ACTGG | 2 cut(s) | 75, 314 |
| BseRI | GAGGAG | 3 cut(s) | 224, 572, 776 |
| BseSI | GKGCMC | 1 cut(s) | 226 |
| BseXI | GCAGC | 1 cut(s) | 9 |
| BseYI | CCCAGC | 1 cut(s) | 619 |
| BsiSI | CCGG | 2 cut(s) | 26, 54 |
| BslFI | GGGAC | 2 cut(s) | 163, 385 |
| BsmAI | GTCTC | 1 cut(s) | 406 |
| BsmFI | GGGAC | 2 cut(s) | 163, 385 |
| BsmI | GAATGC | 1 cut(s) | 397 |
| Bsp1286I | GDGCHC | 1 cut(s) | 226 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 344 |
| BspACI | CCGC | 4 cut(s) | 40, 401, 404, 665 |
| BspCNI | CTCAG | 3 cut(s) | 336, 829, 912 |
| BspLI | GGNNCC | 3 cut(s) | 102, 151, 373 |
| BspQI | GCTCTTC | 1 cut(s) | 423 |
| BsrDI | GCAATG | 1 cut(s) | 237 |
| BsrFI | RCCGGY | 1 cut(s) | 25 |
| BsrI | ACTGG | 2 cut(s) | 75, 314 |
| BssAI | RCCGGY | 1 cut(s) | 25 |
| Bst4CI | ACNGT | 1 cut(s) | 271 |
| Bst6I | CTCTTC | 1 cut(s) | 423 |
| BstC8I | GCNNGC | 1 cut(s) | 470 |
| BstDEI | CTNAG | 3 cut(s) | 344, 837, 899 |
| BstF5I | GGATG | 2 cut(s) | 345, 412 |
| BstMAI | GTCTC | 1 cut(s) | 406 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 401, 451 |
| BstNSI | RCATGY | 1 cut(s) | 472 |
| BstSLI | GKGCMC | 1 cut(s) | 226 |
| BstV1I | GCAGC | 1 cut(s) | 9 |
| BstV2I | GAAGAC | 1 cut(s) | 293 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 82, 126 |
| BtsCI | GGATG | 2 cut(s) | 345, 412 |
| BtsIMutI | CAGTG | 2 cut(s) | 82, 276 |
| Cac8I | GCNNGC | 1 cut(s) | 470 |
| CaiI | CAGNNNCTG | 1 cut(s) | 619 |
| Cfr10I | RCCGGY | 1 cut(s) | 25 |
| Cfr13I | GGNCC | 4 cut(s) | 101, 150, 372, 847 |
| Csp6I | GTAC | 4 cut(s) | 16, 457, 685, 882 |
| CviAII | CATG | 3 cut(s) | 469, 524, 553 |
| CviQI | GTAC | 4 cut(s) | 16, 457, 685, 882 |
| DdeI | CTNAG | 3 cut(s) | 344, 837, 899 |
| Eam1104I | CTCTTC | 1 cut(s) | 423 |
| EarI | CTCTTC | 1 cut(s) | 423 |
| EciI | GGCGGA | 1 cut(s) | 419 |
| Eco47I | GGWCC | 4 cut(s) | 101, 150, 372, 847 |
| Eco57I | CTGAAG | 1 cut(s) | 447 |
| EcoO109I | RGGNCCY | 1 cut(s) | 372 |
| EcoRI | GAATTC | 2 cut(s) | 254, 708 |
| FaeI | CATG | 3 cut(s) | 472, 527, 556 |
| FaiI | YATR | 8 cut(s) | 88, 219, 470, 510, 525, 554, 581, 626 |
| FaqI | GGGAC | 2 cut(s) | 163, 385 |
| FatI | CATG | 3 cut(s) | 468, 523, 552 |
| Fnu4HI | GCNGC | 3 cut(s) | 23, 41, 402 |
| FokI | GGATG | 2 cut(s) | 352, 419 |
| Fsp4HI | GCNGC | 3 cut(s) | 23, 41, 402 |
| GluI | GCNGC | 3 cut(s) | 23, 41, 402 |
| GsaI | CCCAGC | 1 cut(s) | 623 |
| HapII | CCGG | 2 cut(s) | 26, 54 |
| Hin1II | CATG | 3 cut(s) | 472, 527, 556 |
| HincII | GTYRAC | 1 cut(s) | 592 |
| HindII | GTYRAC | 1 cut(s) | 592 |
| HinfI | GANTC | 7 cut(s) | 57, 123, 230, 289, 298, 806, 908 |
| HpaII | CCGG | 2 cut(s) | 26, 54 |
| HphI | GGTGA | 1 cut(s) | 752 |
| Hpy166II | GTNNAC | 2 cut(s) | 592, 847 |
| Hpy188I | TCNGA | 2 cut(s) | 303, 615 |
| Hpy188III | TCNNGA | 5 cut(s) | 127, 293, 734, 815, 924 |
| Hpy8I | GTNNAC | 2 cut(s) | 592, 847 |
| HpyAV | CCTTC | 3 cut(s) | 271, 508, 760 |
| HpyCH4III | ACNGT | 1 cut(s) | 271 |
| HpyCH4IV | ACGT | 3 cut(s) | 14, 479, 700 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 401, 451 |
| HpyF3I | CTNAG | 3 cut(s) | 344, 837, 899 |
| HpySE526I | ACGT | 3 cut(s) | 14, 479, 700 |
| Hsp92II | CATG | 3 cut(s) | 472, 527, 556 |
| LguI | GCTCTTC | 1 cut(s) | 423 |
| LmnI | GCTCC | 1 cut(s) | 559 |
| Lsp1109I | GCAGC | 1 cut(s) | 9 |
| LweI | GCATC | 1 cut(s) | 330 |
| MaeII | ACGT | 3 cut(s) | 14, 479, 700 |
| MboII | GAAGA | 9 cut(s) | 154, 286, 298, 372, 431, 440, 661, 664, 912 |
| MfeI | CAATTG | 1 cut(s) | 585 |
| MhlI | GDGCHC | 1 cut(s) | 226 |
| MluCI | AATT | 9 cut(s) | 47, 248, 254, 321, 585, 644, 678, 708, 862 |
| MlyI | GAGTC | 3 cut(s) | 132, 283, 800 |
| MmeI | TCCRAC | 1 cut(s) | 580 |
| MnlI | CCTC | 8 cut(s) | 176, 202, 205, 483, 550, 754, 832, 865 |
| MseI | TTAA | 3 cut(s) | 95, 186, 797 |
| MspI | CCGG | 2 cut(s) | 26, 54 |
| MunI | CAATTG | 1 cut(s) | 585 |
| Mva1269I | GAATGC | 1 cut(s) | 397 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 401, 451 |
| NlaIII | CATG | 3 cut(s) | 472, 527, 556 |
| NlaIV | GGNNCC | 3 cut(s) | 102, 151, 373 |
| NmeAIII | GCCGAG | 1 cut(s) | 16 |
| NspI | RCATGY | 1 cut(s) | 472 |
| PaeI | GCATGC | 1 cut(s) | 472 |
| PciSI | GCTCTTC | 1 cut(s) | 423 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 180 |
| PctI | GAATGC | 1 cut(s) | 397 |
| PfeI | GAWTC | 4 cut(s) | 57, 230, 298, 908 |
| PkrI | GCNGC | 3 cut(s) | 24, 42, 403 |
| PleI | GAGTC | 3 cut(s) | 131, 283, 800 |
| PpsI | GAGTC | 3 cut(s) | 131, 283, 800 |
| PpuMI | RGGWCCY | 1 cut(s) | 372 |
| Psp1406I | AACGTT | 1 cut(s) | 479 |
| Psp5II | RGGWCCY | 1 cut(s) | 372 |
| PspFI | CCCAGC | 1 cut(s) | 619 |
| PspN4I | GGNNCC | 3 cut(s) | 102, 151, 373 |
| PspPI | GGNCC | 4 cut(s) | 101, 150, 372, 847 |
| PspPPI | RGGWCCY | 1 cut(s) | 372 |
| PstNI | CAGNNNCTG | 1 cut(s) | 619 |
| RsaI | GTAC | 4 cut(s) | 17, 458, 686, 883 |
| RsaNI | GTAC | 4 cut(s) | 16, 457, 685, 882 |
| SapI | GCTCTTC | 1 cut(s) | 423 |
| SaqAI | TTAA | 3 cut(s) | 95, 186, 797 |
| SatI | GCNGC | 3 cut(s) | 23, 41, 402 |
| Sau96I | GGNCC | 4 cut(s) | 101, 150, 372, 847 |
| ScaI | AGTACT | 1 cut(s) | 458 |
| SchI | GAGTC | 3 cut(s) | 132, 283, 800 |
| SduI | GDGCHC | 1 cut(s) | 226 |
| SfaNI | GCATC | 1 cut(s) | 330 |
| SinI | GGWCC | 4 cut(s) | 101, 150, 372, 847 |
| SmlI | CTYRAG | 3 cut(s) | 167, 293, 869 |
| SmoI | CTYRAG | 3 cut(s) | 167, 293, 869 |
| SphI | GCATGC | 1 cut(s) | 472 |
| Sse9I | AATT | 9 cut(s) | 47, 248, 254, 321, 585, 644, 678, 708, 862 |
| SsiI | CCGC | 4 cut(s) | 40, 401, 404, 665 |
| TaaI | ACNGT | 1 cut(s) | 271 |
| TaiI | ACGT | 3 cut(s) | 17, 482, 703 |
| TaqI | TCGA | 2 cut(s) | 475, 500 |
| TasI | AATT | 9 cut(s) | 47, 248, 254, 321, 585, 644, 678, 708, 862 |
| TatI | WGTACW | 1 cut(s) | 456 |
| TauI | GCSGC | 2 cut(s) | 43, 404 |
| TfiI | GAWTC | 4 cut(s) | 57, 230, 298, 908 |
| Tru1I | TTAA | 3 cut(s) | 95, 186, 797 |
| Tru9I | TTAA | 3 cut(s) | 95, 186, 797 |
| TscAI | CASTG | 2 cut(s) | 82, 276 |
| TseI | GCWGC | 1 cut(s) | 22 |
| TspDTI | ATGAA | 4 cut(s) | 226, 804, 834, 909 |
| TspRI | CASTG | 2 cut(s) | 82, 276 |
| VpaK11BI | GGWCC | 4 cut(s) | 101, 150, 372, 847 |
| XapI | RAATTY | 4 cut(s) | 47, 254, 678, 708 |
| XceI | RCATGY | 1 cut(s) | 472 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 669 |
| ZrmI | AGTACT | 1 cut(s) | 458 |