Rroxscaffold_3G00250340

Type I inositol 1,4,5-trisphosphate 5-phosphatase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
44144042 .. 44146919
2878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00250340.1

Sequence Viewer

Length: 480 bp
ATGGAAGAGAGGGGGTGGGTTAATTCCCTTCCGGTCATTATACGTTCAAAAGGACGAAAAGGGCATCACATGCTCTTTGCAAAACCATGCTCAGTGTTCCAATCTAGTAAGCTTTTAGTGCCAGTATGTGAAATATGCCTCTCCGATTTCAGTTTACTACAGAAAATGGTTCAGGAATTCTATCTAAGCAAAGAACTCCGCAGTGGGCATGTATTCGAGGGTTGGAAAGAGGGGCTGATACATTTTCCACCTACCTACAAGTATGAAATCAACTCCGATACATATGTTGGCGAGAATCCAAAAGAAGGAGAGAAGAAGAGATCACCAGCTTGTGGGGTAAAAGAATTATTGTGCCCACTTGTTAGAGGTGGTGGCATTGGGGCTGGCGGGCACACAACTTGCTCTGGCGGAGTCAGTTTGGATCCTTTATCTTTCGGGGTTGTTGATGATGTCCACTTGTTGGCATCCATTGCTTCATAA

Protein Analysis

159

Amino Acids

17.39

Weight (kDa)

7.64

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos2 PF22669 54 - 110 3.5e-09 Endonuclease/Exonuclease/phosphatase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000652)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 332, 460
AciI CCGC 3 cut(s) 199, 387, 408
AclWI GGATC 2 cut(s) 416, 429
AcsI RAATTY 1 cut(s) 176
AfiI CCNNNNNNNGG 3 cut(s) 305, 332, 460
AgsI TTSAA 1 cut(s) 48
AluBI AGCT 2 cut(s) 112, 329
AluI AGCT 2 cut(s) 112, 329
AlwI GGATC 2 cut(s) 416, 429
ApoI RAATTY 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 315
BaeGI GKGCMC 2 cut(s) 356, 393
BaeI ACNNNNGTAYC 2 cut(s) 270, 303
BamHI GGATCC 1 cut(s) 421
BfaI CTAG 1 cut(s) 105
BfmI CTRYAG 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 423
BmsI GCATC 2 cut(s) 73, 473
BsaWI WCCGGW 1 cut(s) 31
Bsc4I CCNNNNNNNGG 3 cut(s) 305, 332, 460
Bse1I ACTGG 1 cut(s) 122
Bse3DI GCAATG 1 cut(s) 468
BseGI GGATG 1 cut(s) 464
BseLI CCNNNNNNNGG 3 cut(s) 305, 332, 460
BseMI GCAATG 1 cut(s) 468
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 122
BseSI GKGCMC 2 cut(s) 356, 393
BsiSI CCGG 1 cut(s) 32
BslI CCNNNNNNNGG 3 cut(s) 305, 332, 460
Bsp1286I GDGCHC 2 cut(s) 356, 393
Bsp143I GATC 2 cut(s) 320, 421
BspACI CCGC 3 cut(s) 199, 387, 408
BspCNI CTCAG 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 423
BspPI GGATC 2 cut(s) 416, 429
BsrDI GCAATG 1 cut(s) 468
BsrI ACTGG 1 cut(s) 122
BssMI GATC 2 cut(s) 320, 421
Bst6I CTCTTC 1 cut(s) 311
BstAPI GCANNNNNTGC 2 cut(s) 70, 470
BstC8I GCNNGC 2 cut(s) 385, 389
BstDEI CTNAG 2 cut(s) 91, 185
BstF5I GGATG 1 cut(s) 464
BstKTI GATC 2 cut(s) 323, 424
BstMBI GATC 2 cut(s) 320, 421
BstMWI GCNNNNNNNGC 3 cut(s) 70, 118, 470
BstNSI RCATGY 2 cut(s) 73, 212
BstSFI CTRYAG 1 cut(s) 158
BstSLI GKGCMC 2 cut(s) 356, 393
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BtsCI GGATG 1 cut(s) 464
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 2 cut(s) 99, 208
Cac8I GCNNGC 2 cut(s) 385, 389
CviAII CATG 3 cut(s) 70, 87, 209
CviJI RGCY 4 cut(s) 112, 235, 329, 383
CviKI_1 RGCY 4 cut(s) 112, 235, 329, 383
DdeI CTNAG 2 cut(s) 91, 185
DpnI GATC 2 cut(s) 322, 423
DpnII GATC 2 cut(s) 320, 421
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
EciI GGCGGA 1 cut(s) 423
EcoRI GAATTC 1 cut(s) 176
FaeI CATG 3 cut(s) 73, 90, 212
FatI CATG 3 cut(s) 69, 86, 208
FauI CCCGC 1 cut(s) 380
FauNDI CATATG 1 cut(s) 283
FokI GGATG 1 cut(s) 451
FspBI CTAG 1 cut(s) 105
HapII CCGG 1 cut(s) 32
Hin1II CATG 3 cut(s) 73, 90, 212
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 2 cut(s) 295, 411
HpaII CCGG 1 cut(s) 32
HphI GGTGA 1 cut(s) 315
Hpy166II GTNNAC 2 cut(s) 155, 454
Hpy188I TCNGA 2 cut(s) 145, 277
Hpy188III TCNNGA 1 cut(s) 173
Hpy8I GTNNAC 2 cut(s) 155, 454
HpyAV CCTTC 2 cut(s) 38, 299
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 3 cut(s) 70, 118, 470
HpyF3I CTNAG 2 cut(s) 91, 185
HpySE526I ACGT 1 cut(s) 43
Hsp92II CATG 3 cut(s) 73, 90, 212
Kzo9I GATC 2 cut(s) 320, 421
LpnPI CCDG 6 cut(s) 45, 135, 158, 339, 369, 390
LweI GCATC 2 cut(s) 73, 473
MaeI CTAG 1 cut(s) 105
MaeII ACGT 1 cut(s) 43
MalI GATC 2 cut(s) 322, 423
MboI GATC 2 cut(s) 320, 421
MboII GAAGA 3 cut(s) 17, 325, 328
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 2 cut(s) 356, 393
MluCI AATT 3 cut(s) 22, 176, 344
MlyI GAGTC 1 cut(s) 420
MmeI TCCRAC 1 cut(s) 203
MnlI CCTC 5 cut(s) 3, 149, 211, 223, 359
MseI TTAA 1 cut(s) 21
MspI CCGG 1 cut(s) 32
MwoI GCNNNNNNNGC 3 cut(s) 70, 118, 470
NdeI CATATG 1 cut(s) 283
NdeII GATC 2 cut(s) 320, 421
NlaIII CATG 3 cut(s) 73, 90, 212
NlaIV GGNNCC 1 cut(s) 423
NspI RCATGY 2 cut(s) 73, 212
PfeI GAWTC 1 cut(s) 295
PflMI CCANNNNNTGG 2 cut(s) 332, 460
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
PspN4I GGNNCC 1 cut(s) 423
PsuI RGATCY 1 cut(s) 421
SaqAI TTAA 1 cut(s) 21
Sau3AI GATC 2 cut(s) 320, 421
SchI GAGTC 1 cut(s) 420
SduI GDGCHC 2 cut(s) 356, 393
SetI ASST 6 cut(s) 46, 114, 253, 257, 331, 370
SfaNI GCATC 2 cut(s) 73, 473
SfcI CTRYAG 1 cut(s) 158
Sse9I AATT 3 cut(s) 22, 176, 344
SsiI CCGC 3 cut(s) 199, 387, 408
SspMI CTAG 1 cut(s) 105
TaiI ACGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 216
TasI AATT 3 cut(s) 22, 176, 344
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 2 cut(s) 99, 208
TspDTI ATGAA 2 cut(s) 279, 465
TspRI CASTG 2 cut(s) 99, 208
Van91I CCANNNNNTGG 2 cut(s) 332, 460
XapI RAATTY 1 cut(s) 176
XceI RCATGY 2 cut(s) 73, 212
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.