RchiOBHm_Chr1g0366181
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000652
Physical Location & Seq
Reverse (-)
56838941 .. 56839447
507 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59075

Sequence Viewer

Length: 507 bp
ATGTATGGGGTTAAAAAAGCAGAACTGGTGAAAGCTTGTCTCTTAAGGGAGTTCTTGCTGATGAAGAGGAACTCATTTGTTTACCTTTTCAAGCCTACCCAACAATCAATATTGGCTCTGATTACAATGACACTATTCCTAAGGACTAAGATGCACCATGACACAGTGATTAATGGAGGACTTTATGCTGGTGCTTTTTTCTTCTCCTTGTATATTGTTGTGCTCAATGCAGTGGCAAAGATATCGATGAATGTAGCGAAGCTTCCAGTTTTTTATAAGCAAAGAAAGCTACTCTTGTTTCCACCATGGGCATATGCACTTCCCACGTGGATCCTCAAGATCCCTCTCACTTGTGTTGAAGTTGGTGTTTGGGTATTCGTTTCCTATTATGTCATTGGATATGATCCAAATGTTGGAAGGTTGTTCAAACAATACCTTATCCTCCTACTCATGCATCAAATGGCTAATGCATTATTCAAATCCATTGCTGGAACTGGTAGAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

168

Amino Acids

19.25

Weight (kDa)

9.97

Isoelectric Point (pI)

39.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 9 - 165 8.3e-29 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 276
AccB7I CCANNNNNTGG 1 cut(s) 413
AclWI GGATC 4 cut(s) 325, 334, 338, 398
AcvI CACGTG 1 cut(s) 327
AfiI CCNNNNNNNGG 1 cut(s) 413
AflII CTTAAG 1 cut(s) 43
AgsI TTSAA 4 cut(s) 91, 359, 427, 478
AluBI AGCT 4 cut(s) 35, 262, 289, 504
AluI AGCT 4 cut(s) 35, 262, 289, 504
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 4 cut(s) 325, 334, 338, 398
AseI ATTAAT 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 40
AxyI CCTNAGG 1 cut(s) 140
BamHI GGATCC 1 cut(s) 330
BarI GAAGNNNNNNTAC 2 cut(s) 246, 278
BbrPI CACGTG 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 225
BcgI CGANNNNNNTGC 2 cut(s) 225, 259
BcoDI GTCTC 1 cut(s) 44
BfrI CTTAAG 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 332
BmsI GCATC 2 cut(s) 141, 463
BpuEI CTTGAG 1 cut(s) 320
Bsa29I ATCGAT 1 cut(s) 245
BsaAI YACGTR 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 305
Bsc4I CCNNNNNNNGG 1 cut(s) 413
Bse1I ACTGG 3 cut(s) 30, 266, 499
Bse21I CCTNAGG 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 483
BseCI ATCGAT 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 305
BseLI CCNNNNNNNGG 1 cut(s) 413
BseMI GCAATG 1 cut(s) 483
BseNI ACTGG 3 cut(s) 30, 266, 499
BshVI ATCGAT 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 225
BslI CCNNNNNNNGG 1 cut(s) 413
BsmAI GTCTC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 3 cut(s) 330, 339, 403
Bsp19I CCATGG 1 cut(s) 305
BspDI ATCGAT 1 cut(s) 245
BspLI GGNNCC 1 cut(s) 332
BspPI GGATC 4 cut(s) 325, 334, 338, 398
BspTI CTTAAG 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 483
BsrI ACTGG 3 cut(s) 30, 266, 499
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 3 cut(s) 330, 339, 403
BssT1I CCWWGG 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 59
BstAFI CTTAAG 1 cut(s) 43
BstBAI YACGTR 1 cut(s) 327
BstDEI CTNAG 2 cut(s) 140, 147
BstDSI CCRYGG 1 cut(s) 305
BstKTI GATC 3 cut(s) 333, 342, 406
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 3 cut(s) 330, 339, 403
BstMWI GCNNNNNNNGC 1 cut(s) 286
BstX2I RGATCY 2 cut(s) 330, 339
BstYI RGATCY 2 cut(s) 330, 339
Bsu15I ATCGAT 1 cut(s) 245
Bsu36I CCTNAGG 1 cut(s) 140
BsuTUI ATCGAT 1 cut(s) 245
BtgI CCRYGG 1 cut(s) 305
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 2 cut(s) 171, 237
ClaI ATCGAT 1 cut(s) 245
CviAII CATG 3 cut(s) 158, 306, 451
CviJI RGCY 7 cut(s) 35, 94, 116, 262, 289, 464, 504
CviKI_1 RGCY 7 cut(s) 35, 94, 116, 262, 289, 464, 504
DdeI CTNAG 2 cut(s) 140, 147
DpnI GATC 3 cut(s) 332, 341, 405
DpnII GATC 3 cut(s) 330, 339, 403
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 305
Eco32I GATATC 1 cut(s) 243
Eco72I CACGTG 1 cut(s) 327
Eco81I CCTNAGG 1 cut(s) 140
EcoRV GATATC 1 cut(s) 243
EcoT14I CCWWGG 1 cut(s) 305
EcoT22I ATGCAT 2 cut(s) 456, 472
ErhI CCWWGG 1 cut(s) 305
FaeI CATG 3 cut(s) 161, 309, 454
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FatI CATG 3 cut(s) 157, 305, 450
FauNDI CATATG 1 cut(s) 313
Hin1II CATG 3 cut(s) 161, 309, 454
HindIII AAGCTT 2 cut(s) 33, 260
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 1 cut(s) 337
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 411
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 5 cut(s) 154, 230, 317, 454, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 286
HpyF3I CTNAG 2 cut(s) 140, 147
HpySE526I ACGT 1 cut(s) 326
Hsp92II CATG 3 cut(s) 161, 309, 454
Kzo9I GATC 3 cut(s) 330, 339, 403
LpnPI CCDG 5 cut(s) 11, 174, 279, 474, 480
LweI GCATC 2 cut(s) 141, 463
MaeII ACGT 1 cut(s) 326
MalI GATC 3 cut(s) 332, 341, 405
MboI GATC 3 cut(s) 330, 339, 403
MboII GAAGA 2 cut(s) 76, 193
MflI RGATCY 2 cut(s) 330, 339
MhlI GDGCHC 1 cut(s) 225
MmeI TCCRAC 1 cut(s) 394
MnlI CCTC 5 cut(s) 60, 170, 344, 354, 452
Mph1103I ATGCAT 2 cut(s) 456, 472
MseI TTAA 3 cut(s) 12, 44, 171
MspCI CTTAAG 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 286
NcoI CCATGG 1 cut(s) 305
NdeI CATATG 1 cut(s) 313
NdeII GATC 3 cut(s) 330, 339, 403
NlaIII CATG 3 cut(s) 161, 309, 454
NlaIV GGNNCC 1 cut(s) 332
NsiI ATGCAT 2 cut(s) 456, 472
PflMI CCANNNNNTGG 1 cut(s) 413
PmaCI CACGTG 1 cut(s) 327
PmlI CACGTG 1 cut(s) 327
Ppu21I YACGTR 1 cut(s) 327
PshBI ATTAAT 1 cut(s) 171
PsiI TTATAA 1 cut(s) 276
PspCI CACGTG 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 332
PsuI RGATCY 2 cut(s) 330, 339
SaqAI TTAA 3 cut(s) 12, 44, 171
Sau3AI GATC 3 cut(s) 330, 339, 403
SduI GDGCHC 1 cut(s) 225
SetI ASST 8 cut(s) 37, 87, 264, 291, 329, 422, 438, 506
SfaNI GCATC 2 cut(s) 141, 463
SmlI CTYRAG 2 cut(s) 43, 335
SmoI CTYRAG 2 cut(s) 43, 335
SspI AATATT 1 cut(s) 111
StyI CCWWGG 1 cut(s) 305
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 1 cut(s) 329
TaqI TCGA 1 cut(s) 245
Tru1I TTAA 3 cut(s) 12, 44, 171
Tru9I TTAA 3 cut(s) 12, 44, 171
TscAI CASTG 2 cut(s) 171, 237
TspDTI ATGAA 2 cut(s) 77, 263
TspRI CASTG 2 cut(s) 171, 237
Van91I CCANNNNNTGG 1 cut(s) 413
Vha464I CTTAAG 1 cut(s) 43
VspI ATTAAT 1 cut(s) 171
Zsp2I ATGCAT 2 cut(s) 456, 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.