Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000652

Physical Location & Seq

Genomic Coordinates Reverse (-)

13861604 .. 13862917

Gene Structure 1314 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG163600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGACACTGCCTTTGTGTCTTACTAAATGGTCTAATTCTGTTTCTTTGCCAAAACAAATTAATGACTTCCTTTTCATATGTGTAAAAGATAGAGGGAAGGGAAATAAATATGAAACTAGATGCCCTTATATTTATATTACAATTTCCAGTTTATTTTCGAAAATCATGATATCAACTGATTTGAACTTGGGAATTGTTGTGACATGTTTTCGTACTCTTGCCGACATGCTCTATCTGCTTCATATTTTCATCAAGTTGAGGACAACTTATATATCACCAAAAACTAGAGTTTTTGGGAGGGGTGAACTTGTTATGGATCCCAAAAAGATTGCTAGAAGGTATCTGAGATCAGATTTCTTCGTAGATCTTATAGCTACACTGCCTCTCCCTCAGATTGTCATATGGTTCATCATACCTGCAGTTAAAAGCTCCAGTTCTGGCCATACCCATAATGCCCTTGTACTAATTGTTCTGCTCCAATATGTTCCTAGATTGTATCTCATTTTCCCACTAAGTTCTCAGATCATCAAAGCCACTGGCGTGGTCACAAAGACAGCTTGGGCTGGGGCTGCGTATAATCTCATACTCTATAGTCTACATGTCTTAGGTGCTTCATGGTACCTATTATCAATCGAACGGTATGCAACTTGCTGGAAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

220

Amino Acids

25.09

Weight (kDa)

9.77

Isoelectric Point (pI)

30.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18010 AT4G18010
fragaria_vesca	FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica	MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica	Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata	RLG00000003205
rosa_multiflora	Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa	Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha	Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana	Rw7G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	424
Acc65I	GGTACC	1 cut(s)	618
AccB1I	GGYRCC	1 cut(s)	618
AccI	GTMKAC	1 cut(s)	595
AclWI	GGATC	2 cut(s)	311, 324
AcoI	YGGCCR	1 cut(s)	439
AfaI	GTAC	3 cut(s)	214, 462, 620
AflIII	ACRYGT	2 cut(s)	203, 598
AgsI	TTSAA	1 cut(s)	184
AleI	CACNNNNGTG	1 cut(s)	539
AluBI	AGCT	3 cut(s)	374, 429, 557
AluI	AGCT	3 cut(s)	374, 429, 557
AlwI	GGATC	2 cut(s)	311, 324
AoxI	GGCC	1 cut(s)	439
ApeKI	GCWGC	1 cut(s)	569
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AseI	ATTAAT	1 cut(s)	60
Asp718I	GGTACC	1 cut(s)	618
AsuHPI	GGTGA	2 cut(s)	267, 314
AsuII	TTCGAA	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	441
BamHI	GGATCC	1 cut(s)	316
BanI	GGYRCC	1 cut(s)	618
BbvI	GCAGC	1 cut(s)	556
BcgI	CGANNNNNNTGC	2 cut(s)	623, 657
BfaI	CTAG	4 cut(s)	117, 285, 333, 489
BfmI	CTRYAG	2 cut(s)	417, 589
BfuAI	ACCTGC	1 cut(s)	424
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	1 cut(s)	570
BlsI	GCNGC	1 cut(s)	571
BmiI	GGNNCC	2 cut(s)	318, 620
BmsI	GCATC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	415
Bpu14I	TTCGAA	1 cut(s)	158
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bse1I	ACTGG	3 cut(s)	147, 432, 541
BseMII	CTCAG	3 cut(s)	335, 404, 533
BseNI	ACTGG	3 cut(s)	147, 432, 541
BseXI	GCAGC	1 cut(s)	556
BseYI	CCCAGC	1 cut(s)	563
BshFI	GGCC	1 cut(s)	441
BshNI	GGYRCC	1 cut(s)	618
BsnI	GGCC	1 cut(s)	441
Bsp119I	TTCGAA	1 cut(s)	158
Bsp143I	GATC	4 cut(s)	316, 347, 364, 522
BspANI	GGCC	1 cut(s)	441
BspCNI	CTCAG	3 cut(s)	336, 403, 532
BspHI	TCATGA	1 cut(s)	165
BspLI	GGNNCC	2 cut(s)	318, 620
BspMAI	CTGCAG	1 cut(s)	421
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	2 cut(s)	311, 324
BspT104I	TTCGAA	1 cut(s)	158
BspT107I	GGYRCC	1 cut(s)	618
BsrI	ACTGG	3 cut(s)	147, 432, 541
BssMI	GATC	4 cut(s)	316, 347, 364, 522
Bst4CI	ACNGT	1 cut(s)	639
BstBI	TTCGAA	1 cut(s)	158
BstDEI	CTNAG	5 cut(s)	344, 390, 512, 519, 604
BstKTI	GATC	4 cut(s)	319, 350, 367, 525
BstMBI	GATC	4 cut(s)	316, 347, 364, 522
BstMWI	GCNNNNNNNGC	2 cut(s)	235, 569
BstNSI	RCATGY	3 cut(s)	207, 229, 602
BstSFI	CTRYAG	2 cut(s)	417, 589
BstV1I	GCAGC	1 cut(s)	556
BstX2I	RGATCY	2 cut(s)	316, 364
BstXI	CCANNNNNNTGG	1 cut(s)	541
BstYI	RGATCY	2 cut(s)	316, 364
BsuRI	GGCC	1 cut(s)	441
BtsI	GCAGTG	2 cut(s)	5, 377
BtsIMutI	CAGTG	3 cut(s)	5, 377, 534
BveI	ACCTGC	1 cut(s)	424
CciI	TCATGA	1 cut(s)	165
Csp6I	GTAC	3 cut(s)	213, 461, 619
CviAII	CATG	5 cut(s)	166, 204, 226, 599, 615
CviJI	RGCY	8 cut(s)	374, 429, 441, 533, 557, 563, 569, 658
CviKI_1	RGCY	8 cut(s)	374, 429, 441, 533, 557, 563, 569, 658
CviQI	GTAC	3 cut(s)	213, 461, 619
DdeI	CTNAG	5 cut(s)	344, 390, 512, 519, 604
DpnI	GATC	4 cut(s)	318, 349, 366, 524
DpnII	GATC	4 cut(s)	316, 347, 364, 522
EaeI	YGGCCR	1 cut(s)	439
Eco32I	GATATC	1 cut(s)	171
EcoRV	GATATC	1 cut(s)	171
FaeI	CATG	5 cut(s)	169, 207, 229, 602, 618
FatI	CATG	5 cut(s)	165, 203, 225, 598, 614
FauNDI	CATATG	2 cut(s)	77, 401
FblI	GTMKAC	1 cut(s)	595
Fnu4HI	GCNGC	1 cut(s)	570
Fsp4HI	GCNGC	1 cut(s)	570
FspBI	CTAG	4 cut(s)	117, 285, 333, 489
GluI	GCNGC	1 cut(s)	570
GsaI	CCCAGC	1 cut(s)	567
GsuI	CTGGAG	1 cut(s)	415
HaeIII	GGCC	1 cut(s)	441
Hin1II	CATG	5 cut(s)	169, 207, 229, 602, 618
HphI	GGTGA	2 cut(s)	267, 314
Hpy166II	GTNNAC	2 cut(s)	305, 596
Hpy188I	TCNGA	4 cut(s)	345, 352, 393, 522
Hpy188III	TCNNGA	1 cut(s)	166
Hpy8I	GTNNAC	2 cut(s)	305, 596
HpyAV	CCTTC	2 cut(s)	91, 330
HpyCH4III	ACNGT	1 cut(s)	639
HpyCH4V	TGCA	2 cut(s)	419, 644
HpyF10VI	GCNNNNNNNGC	2 cut(s)	235, 569
HpyF3I	CTNAG	5 cut(s)	344, 390, 512, 519, 604
Hsp92II	CATG	5 cut(s)	169, 207, 229, 602, 618
KpnI	GGTACC	1 cut(s)	622
Kzo9I	GATC	4 cut(s)	316, 347, 364, 522
LmnI	GCTCC	2 cut(s)	434, 480
LpnPI	CCDG	7 cut(s)	160, 423, 429, 445, 522, 549, 637
Lsp1109I	GCAGC	1 cut(s)	556
LweI	GCATC	1 cut(s)	110
MaeI	CTAG	4 cut(s)	117, 285, 333, 489
MaeIII	GTNAC	2 cut(s)	199, 544
MalI	GATC	4 cut(s)	318, 349, 366, 524
MboI	GATC	4 cut(s)	316, 347, 364, 522
MboII	GAAGA	1 cut(s)	349
MflI	RGATCY	2 cut(s)	316, 364
MlsI	TGGCCA	1 cut(s)	441
MluCI	AATT	5 cut(s)	34, 57, 141, 192, 465
MluNI	TGGCCA	1 cut(s)	441
MnlI	CCTC	5 cut(s)	86, 252, 291, 393, 399
Mox20I	TGGCCA	1 cut(s)	441
MscI	TGGCCA	1 cut(s)	441
MseI	TTAA	3 cut(s)	60, 423, 661
MslI	CAYNNNNRTG	1 cut(s)	539
Msp20I	TGGCCA	1 cut(s)	441
MwoI	GCNNNNNNNGC	2 cut(s)	235, 569
NdeI	CATATG	2 cut(s)	77, 401
NdeII	GATC	4 cut(s)	316, 347, 364, 522
NlaIII	CATG	5 cut(s)	169, 207, 229, 602, 618
NlaIV	GGNNCC	2 cut(s)	318, 620
NmuCI	GTSAC	2 cut(s)	199, 544
NspI	RCATGY	3 cut(s)	207, 229, 602
NspV	TTCGAA	1 cut(s)	158
OliI	CACNNNNGTG	1 cut(s)	539
PagI	TCATGA	1 cut(s)	165
PciI	ACATGT	2 cut(s)	203, 598
PkrI	GCNGC	1 cut(s)	571
PscI	ACATGT	2 cut(s)	203, 598
PshBI	ATTAAT	1 cut(s)	60
PspFI	CCCAGC	1 cut(s)	563
PspN4I	GGNNCC	2 cut(s)	318, 620
PsrI	GAACNNNNNNTAC	2 cut(s)	453, 485
PstI	CTGCAG	1 cut(s)	421
PsuI	RGATCY	2 cut(s)	316, 364
RsaI	GTAC	3 cut(s)	214, 462, 620
RsaNI	GTAC	3 cut(s)	213, 461, 619
RseI	CAYNNNNRTG	1 cut(s)	539
SaqAI	TTAA	3 cut(s)	60, 423, 661
SatI	GCNGC	1 cut(s)	570
Sau3AI	GATC	4 cut(s)	316, 347, 364, 522
SetI	ASST	7 cut(s)	341, 376, 418, 431, 559, 610, 624
SfaNI	GCATC	1 cut(s)	110
SfcI	CTRYAG	2 cut(s)	417, 589
SfuI	TTCGAA	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	539
Sse9I	AATT	5 cut(s)	34, 57, 141, 192, 465
SspMI	CTAG	4 cut(s)	117, 285, 333, 489
TaaI	ACNGT	1 cut(s)	639
TaqI	TCGA	2 cut(s)	158, 633
TasI	AATT	5 cut(s)	34, 57, 141, 192, 465
TatI	WGTACW	1 cut(s)	460
Tru1I	TTAA	3 cut(s)	60, 423, 661
Tru9I	TTAA	3 cut(s)	60, 423, 661
TscAI	CASTG	3 cut(s)	12, 384, 541
TseFI	GTSAC	2 cut(s)	199, 544
TseI	GCWGC	1 cut(s)	569
Tsp45I	GTSAC	2 cut(s)	199, 544
TspDTI	ATGAA	6 cut(s)	64, 126, 230, 238, 397, 603
TspRI	CASTG	3 cut(s)	12, 384, 541
VspI	ATTAAT	1 cut(s)	60
XceI	RCATGY	3 cut(s)	207, 229, 602
XmiI	GTMKAC	1 cut(s)	595
XspI	CTAG	4 cut(s)	117, 285, 333, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.