Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000652

Physical Location & Seq

Genomic Coordinates Reverse (-)

4982305 .. 4983424

Gene Structure 1120 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1038900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCAACCACTAAATGTGCAGCTAATCACAGAACTTCGTAGTGGGCATGTATTCGAAGGATGGAAAGAGGGAGTGATACAATTTCCCCCAACCTACAAGTATGAAAACAACTCTGACAGATATTTTGGAGAGAATCCAAAAGAAGGAGAGAAGAAAAGAACACCAGCATGGTGTGATCGCATACTATGGCTGGGAAAAGGCATCAAACAACTTTCTTATAAGCGGGCAGAACTAAAGCTTTCAGATCATCGACCGGTTAGCTCAACCTTCATGGTTGAAGTTGAAGTCCTAGATCACTGGAAGCTGCAACGAGCTCTCAATTGTACTAGCGTAGCATACAAGAAACATAATGTCATTGGTGTTGCACGCCCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004439 GO:0004445 GO:0005975 GO:0006066 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0030258 GO:0032501 GO:0032502 GO:0032957 GO:0033993 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042221 GO:0042578 GO:0043647 GO:0044237 GO:0044238 GO:0044255 GO:0044262 GO:0044281 GO:0044282 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046486 GO:0046488 GO:0046838 GO:0046839 GO:0046855 GO:0046856 GO:0048856 GO:0050896 GO:0052745 GO:0052866 GO:0071545 GO:0071704 GO:0090351 GO:0097305 GO:0106019 GO:1901575 GO:1901615 GO:1901616 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

126

Amino Acids

14.6

Weight (kDa)

9.42

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos2	PF22669	7 - 88	5e-25	Endonuclease/Exonuclease/phosphatase family 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18010 AT4G18010
fragaria_vesca	FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica	MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica	Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata	RLG00000003205
rosa_multiflora	Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa	Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha	Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana	Rw7G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	219
AciI	CCGC	1 cut(s)	223
AfaI	GTAC	1 cut(s)	325
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgeI	ACCGGT	1 cut(s)	253
AgsI	TTSAA	2 cut(s)	278, 284
AluBI	AGCT	5 cut(s)	22, 238, 261, 304, 314
AluI	AGCT	5 cut(s)	22, 238, 261, 304, 314
Alw21I	GWGCWC	1 cut(s)	316
ApeKI	GCWGC	2 cut(s)	19, 304
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AsiGI	ACCGGT	1 cut(s)	253
AsuII	TTCGAA	1 cut(s)	54
BanII	GRGCYC	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	316
BbvI	GCAGC	2 cut(s)	31, 291
BccI	CCATC	1 cut(s)	54
BfaI	CTAG	2 cut(s)	290, 327
BisI	GCNGC	2 cut(s)	20, 305
BlsI	GCNGC	2 cut(s)	21, 306
BmsI	GCATC	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse118I	RCCGGY	1 cut(s)	253
Bse1I	ACTGG	1 cut(s)	302
BseGI	GGATG	1 cut(s)	65
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseNI	ACTGG	1 cut(s)	302
BseXI	GCAGC	2 cut(s)	31, 291
BseYI	CCCAGC	1 cut(s)	190
BsgI	GTGCAG	1 cut(s)	38
Bsh1285I	CGRYCG	1 cut(s)	254
BshTI	ACCGGT	1 cut(s)	253
BsiEI	CGRYCG	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	316
BsiSI	CCGG	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	143
Bsp119I	TTCGAA	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	3 cut(s)	175, 244, 292
BspACI	CCGC	1 cut(s)	223
BspT104I	TTCGAA	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	253
BssMI	GATC	3 cut(s)	175, 244, 292
BstBI	TTCGAA	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	225, 367
BstF5I	GGATG	1 cut(s)	65
BstKTI	GATC	3 cut(s)	178, 247, 295
BstMBI	GATC	3 cut(s)	175, 244, 292
BstMCI	CGRYCG	1 cut(s)	254
BstNSI	RCATGY	1 cut(s)	50
BstV1I	GCAGC	2 cut(s)	31, 291
BtsCI	GGATG	1 cut(s)	65
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	225, 367
Cfr10I	RCCGGY	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	324
CspAI	ACCGGT	1 cut(s)	253
CviAII	CATG	3 cut(s)	47, 168, 271
CviJI	RGCY	6 cut(s)	22, 190, 238, 261, 304, 314
CviKI_1	RGCY	6 cut(s)	22, 190, 238, 261, 304, 314
CviQI	GTAC	1 cut(s)	324
DpnI	GATC	3 cut(s)	177, 246, 294
DpnII	GATC	3 cut(s)	175, 244, 292
Ecl136II	GAGCTC	1 cut(s)	314
Eco24I	GRGCYC	1 cut(s)	316
Eco53kI	GAGCTC	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	314
EcoT38I	GRGCYC	1 cut(s)	316
FaeI	CATG	3 cut(s)	50, 171, 274
FaiI	YATR	9 cut(s)	48, 102, 169, 182, 187, 219, 272, 337, 348
FatI	CATG	3 cut(s)	46, 167, 270
FauI	CCCGC	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	20, 305
FokI	GGATG	1 cut(s)	72
FriOI	GRGCYC	1 cut(s)	316
Fsp4HI	GCNGC	2 cut(s)	20, 305
FspBI	CTAG	2 cut(s)	290, 327
GluI	GCNGC	2 cut(s)	20, 305
GsaI	CCCAGC	1 cut(s)	194
HapII	CCGG	1 cut(s)	254
Hin1II	CATG	3 cut(s)	50, 171, 274
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	254
Hpy188I	TCNGA	2 cut(s)	115, 244
HpyAV	CCTTC	3 cut(s)	50, 137, 277
HpyCH4V	TGCA	4 cut(s)	4, 19, 307, 365
Hsp92II	CATG	3 cut(s)	50, 171, 274
Kzo9I	GATC	3 cut(s)	175, 244, 292
LpnPI	CCDG	4 cut(s)	176, 177, 267, 283
Lsp1109I	GCAGC	2 cut(s)	31, 291
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	2 cut(s)	290, 327
MalI	GATC	3 cut(s)	177, 246, 294
MboI	GATC	3 cut(s)	175, 244, 292
MboII	GAAGA	1 cut(s)	163
MfeI	CAATTG	1 cut(s)	319
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	2 cut(s)	80, 319
MnlI	CCTC	1 cut(s)	61
MseI	TTAA	1 cut(s)	376
MslI	CAYNNNNRTG	1 cut(s)	166
MspI	CCGG	1 cut(s)	254
MunI	CAATTG	1 cut(s)	319
NdeII	GATC	3 cut(s)	175, 244, 292
NlaIII	CATG	3 cut(s)	50, 171, 274
NspI	RCATGY	1 cut(s)	50
NspV	TTCGAA	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	133
PinAI	ACCGGT	1 cut(s)	253
PkrI	GCNGC	2 cut(s)	21, 306
PsiI	TTATAA	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	316
PspFI	CCCAGC	1 cut(s)	190
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
RseI	CAYNNNNRTG	1 cut(s)	166
SacI	GAGCTC	1 cut(s)	316
SaqAI	TTAA	1 cut(s)	376
SatI	GCNGC	2 cut(s)	20, 305
Sau3AI	GATC	3 cut(s)	175, 244, 292
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	7 cut(s)	24, 95, 240, 263, 269, 306, 316
SfaNI	GCATC	1 cut(s)	210
SfuI	TTCGAA	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	166
Sse9I	AATT	2 cut(s)	80, 319
SsiI	CCGC	1 cut(s)	223
SspMI	CTAG	2 cut(s)	290, 327
SstI	GAGCTC	1 cut(s)	316
TaqI	TCGA	2 cut(s)	54, 250
TasI	AATT	2 cut(s)	80, 319
TatI	WGTACW	1 cut(s)	323
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	1 cut(s)	376
Tru9I	TTAA	1 cut(s)	376
TscAI	CASTG	1 cut(s)	302
TseI	GCWGC	2 cut(s)	19, 304
TspDTI	ATGAA	2 cut(s)	117, 259
TspRI	CASTG	1 cut(s)	302
XceI	RCATGY	1 cut(s)	50
XspI	CTAG	2 cut(s)	290, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.