Rmu_sc0001758.1_g000030
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001758.1
OG0000652
Physical Location & Seq
Forward (+)
173421 .. 178076
4656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001758.1_g000030.1.cds

Sequence Viewer

Length: 1071 bp
atgggatctggtgctggaagtttcctcaaagttctccttaaaaacttcgatgttcttgctgggttgttgtggagtatggctttgttcatttccagaagaatcgtacgttcatttggttctggtttagcatcaggccatgtttccaagggtggatcagtgttttgtgcttgtcgaatgctttcgacattagtcttgaaccatgagtccagtggaggtgcattttgctctgattcattgtccttaaagcctcccagggcttcggagtgcactacaggtaggctgacaataagcacttggaatgctgctggaagagttccggatgaaaaccttgatattgatgattggatttcttcagaagagccatcggatatctacatgttcaatcgaatggcagaactttcgatgactatagccaagcttccagtgttttataagcacagaaagctgctcttctttccaccatgggcatatgcacttccggcatggctcctcaagatccctctcacctgtgttgaagttggtgtttgggacgacgacagacagagggacgcaagcggacggaagaaacctctccaaagctcagaagtctctcaagctcgtgaagaaccatcaagctgccaaatagccggtctcttcacctcgccgacttcagacaagcaagggaaatcacctacaagctcggaagtcgtcaaacacgcggatgatcaacaagcaccaaacacacgatttttcgtgtttacagactccacagaaaatataaagaaatggtggatatggggttactggatatcacctttgatgtatgggcagaatgcaattgtagttaatgaattccttggcaagagttggtcacatgttcttccaaactcaaacgaatcattaggagttgaaattctgaaatctcatggatttcgtacgcatgcatattggtattggattggcgcaggagcattggctggatacatgctcttattcaacatttgttacactctggctctcacttatctaaatcgtgaagcaatctggatacttgatgtttcaagaaaggttgtagttttactcaatttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

356

Amino Acids

39.79

Weight (kDa)

8.39

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
AccII CGCG 1 cut(s) 698
AccIII TCCGGA 1 cut(s) 316
AciI CCGC 2 cut(s) 555, 698
AclWI GGATC 3 cut(s) 13, 160, 490
AcsI RAATTY 2 cut(s) 830, 891
AcuI CTGAAG 2 cut(s) 336, 633
AfaI GTAC 2 cut(s) 105, 916
AflIII ACRYGT 2 cut(s) 375, 853
AgsI TTSAA 6 cut(s) 196, 382, 515, 890, 976, 1041
AjnI CCWGG 1 cut(s) 251
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
AluBI AGCT 6 cut(s) 418, 445, 579, 596, 615, 678
AluI AGCT 6 cut(s) 418, 445, 579, 596, 615, 678
Alw21I GWGCWC 1 cut(s) 269
Alw26I GTCTC 2 cut(s) 592, 635
Alw44I GTGCAC 1 cut(s) 265
AlwI GGATC 3 cut(s) 13, 160, 490
Aor13HI TCCGGA 1 cut(s) 316
AoxI GGCC 1 cut(s) 133
ApaLI GTGCAC 1 cut(s) 265
ApeKI GCWGC 3 cut(s) 302, 445, 615
ApoI RAATTY 2 cut(s) 830, 891
ArsI GACNNNNNNTTYG 2 cut(s) 613, 645
Asp700I GAANNNNTTC 1 cut(s) 178
AspLEI GCGC 1 cut(s) 944
AsuHPI GGTGA 4 cut(s) 496, 628, 660, 783
BaeGI GKGCMC 1 cut(s) 269
BauI CACGAG 1 cut(s) 597
Bbv12I GWGCWC 1 cut(s) 269
BbvI GCAGC 3 cut(s) 289, 432, 602
BccI CCATC 2 cut(s) 370, 616
BcgI CGANNNNNNTGC 4 cut(s) 38, 72, 381, 415
BciT130I CCWGG 1 cut(s) 253
BciVI GTATCC 2 cut(s) 953, 1020
BclI TGATCA 1 cut(s) 703
BcoDI GTCTC 2 cut(s) 592, 635
BfmI CTRYAG 2 cut(s) 270, 408
BfuI GTATCC 2 cut(s) 953, 1020
BisI GCNGC 3 cut(s) 303, 446, 616
BlsI GCNGC 3 cut(s) 304, 447, 617
Bme1390I CCNGG 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 488
BmrFI CCNGG 1 cut(s) 253
BmsI GCATC 1 cut(s) 137
BoxI GACNNNNGTC 1 cut(s) 188
BpuEI CTTGAG 2 cut(s) 476, 576
BsaI GGTCTC 1 cut(s) 635
BsaJI CCNNGG 5 cut(s) 144, 251, 252, 461, 835
BsaWI WCCGGW 1 cut(s) 316
Bse118I RCCGGY 1 cut(s) 626
Bse1I ACTGG 3 cut(s) 207, 422, 788
BseAI TCCGGA 1 cut(s) 316
BseBI CCWGG 1 cut(s) 253
BseDI CCNNGG 5 cut(s) 144, 251, 252, 461, 835
BseGI GGATG 2 cut(s) 325, 706
BseMII CTCAG 1 cut(s) 594
BseNI ACTGG 3 cut(s) 207, 422, 788
BseRI GAGGAG 1 cut(s) 479
BseSI GKGCMC 1 cut(s) 269
BseXI GCAGC 3 cut(s) 289, 432, 602
BseYI CCCAGC 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 698
BshFI GGCC 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 269
BsiSI CCGG 3 cut(s) 317, 479, 627
BsiWI CGTACG 2 cut(s) 103, 914
BslFI GGGAC 2 cut(s) 542, 560
BsmAI GTCTC 2 cut(s) 592, 635
BsmFI GGGAC 2 cut(s) 542, 560
BsmI GAATGC 3 cut(s) 180, 304, 817
BsnI GGCC 1 cut(s) 135
Bso31I GGTCTC 1 cut(s) 635
Bsp1286I GDGCHC 1 cut(s) 269
Bsp13I TCCGGA 1 cut(s) 316
Bsp143I GATC 4 cut(s) 5, 152, 495, 703
Bsp19I CCATGG 1 cut(s) 461
BspACI CCGC 2 cut(s) 555, 698
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 593
BspEI TCCGGA 1 cut(s) 316
BspFNI CGCG 1 cut(s) 698
BspLI GGNNCC 1 cut(s) 488
BspPI GGATC 3 cut(s) 13, 160, 490
BspQI GCTCTTC 2 cut(s) 351, 455
BspTNI GGTCTC 1 cut(s) 635
BsrFI RCCGGY 1 cut(s) 626
BsrI ACTGG 3 cut(s) 207, 422, 788
BssAI RCCGGY 1 cut(s) 626
BssECI CCNNGG 5 cut(s) 144, 251, 252, 461, 835
BssMI GATC 4 cut(s) 5, 152, 495, 703
BssSI CACGAG 1 cut(s) 597
BssT1I CCWWGG 3 cut(s) 144, 461, 835
Bst2BI CACGAG 1 cut(s) 597
Bst2UI CCWGG 1 cut(s) 253
Bst6I CTCTTC 4 cut(s) 304, 351, 455, 638
BstC8I GCNNGC 2 cut(s) 553, 921
BstDEI CTNAG 1 cut(s) 580
BstDSI CCRYGG 1 cut(s) 461
BstF5I GGATG 2 cut(s) 325, 706
BstFNI CGCG 1 cut(s) 698
BstHHI GCGC 1 cut(s) 944
BstKTI GATC 4 cut(s) 8, 155, 498, 706
BstMAI GTCTC 2 cut(s) 592, 635
BstMBI GATC 4 cut(s) 5, 152, 495, 703
BstMWI GCNNNNNNNGC 2 cut(s) 442, 479
BstNI CCWGG 1 cut(s) 253
BstNSI RCATGY 4 cut(s) 379, 857, 923, 967
BstPAI GACNNNNGTC 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 251
BstSFI CTRYAG 2 cut(s) 270, 408
BstSLI GKGCMC 1 cut(s) 269
BstUI CGCG 1 cut(s) 698
BstV1I GCAGC 3 cut(s) 289, 432, 602
BstX2I RGATCY 2 cut(s) 5, 495
BstYI RGATCY 2 cut(s) 5, 495
BsuI GTATCC 2 cut(s) 953, 1020
BsuRI GGCC 1 cut(s) 135
BtgI CCRYGG 1 cut(s) 461
BtsCI GGATG 2 cut(s) 325, 706
BtsIMutI CAGTG 3 cut(s) 162, 214, 429
Cac8I GCNNGC 2 cut(s) 553, 921
CfoI GCGC 1 cut(s) 944
Cfr10I RCCGGY 1 cut(s) 626
CseI GACGC 1 cut(s) 557
Csp6I GTAC 2 cut(s) 104, 915
CviAII CATG 9 cut(s) 137, 200, 376, 462, 483, 854, 905, 920, 964
CviQI GTAC 2 cut(s) 104, 915
DdeI CTNAG 1 cut(s) 580
DpnI GATC 4 cut(s) 7, 154, 497, 705
DpnII GATC 4 cut(s) 5, 152, 495, 703
Eam1104I CTCTTC 4 cut(s) 304, 351, 455, 638
EarI CTCTTC 4 cut(s) 304, 351, 455, 638
Eco130I CCWWGG 3 cut(s) 144, 461, 835
Eco31I GGTCTC 1 cut(s) 635
Eco32I GATATC 2 cut(s) 370, 789
Eco57I CTGAAG 2 cut(s) 336, 633
EcoRI GAATTC 1 cut(s) 830
EcoRII CCWGG 1 cut(s) 251
EcoRV GATATC 2 cut(s) 370, 789
EcoT14I CCWWGG 3 cut(s) 144, 461, 835
EcoT22I ATGCAT 1 cut(s) 925
ErhI CCWWGG 3 cut(s) 144, 461, 835
FaeI CATG 9 cut(s) 140, 203, 379, 465, 486, 857, 908, 923, 967
FalI AAGNNNNNCTT 4 cut(s) 21, 53, 434, 466
FaqI GGGAC 2 cut(s) 542, 560
FatI CATG 9 cut(s) 136, 199, 375, 461, 482, 853, 904, 919, 963
FauNDI CATATG 1 cut(s) 469
FbaI TGATCA 1 cut(s) 703
Fnu4HI GCNGC 3 cut(s) 303, 446, 616
FokI GGATG 2 cut(s) 332, 713
Fsp4HI GCNGC 3 cut(s) 303, 446, 616
GlaI GCGC 1 cut(s) 943
GluI GCNGC 3 cut(s) 303, 446, 616
GsaI CCCAGC 1 cut(s) 63
HaeIII GGCC 1 cut(s) 135
HapII CCGG 3 cut(s) 317, 479, 627
HgaI GACGC 1 cut(s) 557
HhaI GCGC 1 cut(s) 944
Hin1II CATG 9 cut(s) 140, 203, 379, 465, 486, 857, 908, 923, 967
Hin6I GCGC 1 cut(s) 942
HinP1I GCGC 1 cut(s) 942
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 5 cut(s) 99, 203, 230, 743, 875
HpaII CCGG 3 cut(s) 317, 479, 627
HphI GGTGA 4 cut(s) 496, 628, 660, 783
Hpy166II GTNNAC 2 cut(s) 267, 738
Hpy188I TCNGA 8 cut(s) 229, 262, 355, 367, 583, 652, 682, 897
Hpy188III TCNNGA 8 cut(s) 93, 193, 317, 493, 599, 1013, 1024, 1041
Hpy8I GTNNAC 2 cut(s) 267, 738
Hpy99I CGWCG 1 cut(s) 536
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 5 cut(s) 218, 267, 473, 815, 923
HpyF10VI GCNNNNNNNGC 2 cut(s) 442, 479
HpyF3I CTNAG 1 cut(s) 580
HpySE526I ACGT 1 cut(s) 106
Hsp92II CATG 9 cut(s) 140, 203, 379, 465, 486, 857, 908, 923, 967
HspAI GCGC 1 cut(s) 942
Kpn2I TCCGGA 1 cut(s) 316
Ksp22I TGATCA 1 cut(s) 703
Kzo9I GATC 4 cut(s) 5, 152, 495, 703
LguI GCTCTTC 2 cut(s) 351, 455
LmnI GCTCC 2 cut(s) 492, 947
Lsp1109I GCAGC 3 cut(s) 289, 432, 602
LweI GCATC 1 cut(s) 137
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 3 cut(s) 779, 849, 983
MalI GATC 4 cut(s) 7, 154, 497, 705
MboI GATC 4 cut(s) 5, 152, 495, 703
MboII GAAGA 9 cut(s) 108, 321, 342, 368, 442, 574, 614, 625, 851
MfeI CAATTG 1 cut(s) 816
MflI RGATCY 2 cut(s) 5, 495
MhlI GDGCHC 1 cut(s) 269
MluCI AATT 4 cut(s) 816, 830, 891, 1063
MlyI GAGTC 2 cut(s) 212, 737
MnlI CCTC 8 cut(s) 35, 206, 258, 500, 510, 537, 579, 649
Mph1103I ATGCAT 1 cut(s) 925
MroI TCCGGA 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 178
MseI TTAA 3 cut(s) 39, 242, 825
MslI CAYNNNNRTG 1 cut(s) 699
MspI CCGG 3 cut(s) 317, 479, 627
MspR9I CCNGG 1 cut(s) 253
MunI CAATTG 1 cut(s) 816
Mva1269I GAATGC 3 cut(s) 180, 304, 817
MvaI CCWGG 1 cut(s) 253
MvnI CGCG 1 cut(s) 698
MwoI GCNNNNNNNGC 2 cut(s) 442, 479
NcoI CCATGG 1 cut(s) 461
NdeI CATATG 1 cut(s) 469
NdeII GATC 4 cut(s) 5, 152, 495, 703
NlaIII CATG 9 cut(s) 140, 203, 379, 465, 486, 857, 908, 923, 967
NlaIV GGNNCC 1 cut(s) 488
NmuCI GTSAC 1 cut(s) 849
NsiI ATGCAT 1 cut(s) 925
NspI RCATGY 4 cut(s) 379, 857, 923, 967
PaeI GCATGC 1 cut(s) 923
PasI CCCWGGG 1 cut(s) 252
PciI ACATGT 2 cut(s) 375, 853
PciSI GCTCTTC 2 cut(s) 351, 455
PctI GAATGC 3 cut(s) 180, 304, 817
PdmI GAANNNNTTC 1 cut(s) 178
PfeI GAWTC 3 cut(s) 99, 230, 875
Pfl23II CGTACG 2 cut(s) 103, 914
PkrI GCNGC 3 cut(s) 304, 447, 617
PleI GAGTC 2 cut(s) 211, 737
PpsI GAGTC 2 cut(s) 211, 737
PscI ACATGT 2 cut(s) 375, 853
PshAI GACNNNNGTC 1 cut(s) 188
PsiI TTATAA 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 59
PspGI CCWGG 1 cut(s) 251
PspLI CGTACG 2 cut(s) 103, 914
PspN4I GGNNCC 1 cut(s) 488
PsuI RGATCY 2 cut(s) 5, 495
RsaI GTAC 2 cut(s) 105, 916
RsaNI GTAC 2 cut(s) 104, 915
RseI CAYNNNNRTG 1 cut(s) 699
SapI GCTCTTC 2 cut(s) 351, 455
SaqAI TTAA 3 cut(s) 39, 242, 825
SatI GCNGC 3 cut(s) 303, 446, 616
Sau3AI GATC 4 cut(s) 5, 152, 495, 703
SchI GAGTC 2 cut(s) 212, 737
ScrFI CCNGG 1 cut(s) 253
SduI GDGCHC 1 cut(s) 269
SfaNI GCATC 1 cut(s) 137
SfcI CTRYAG 2 cut(s) 270, 408
SmiMI CAYNNNNRTG 1 cut(s) 699
SmlI CTYRAG 2 cut(s) 491, 591
SmoI CTYRAG 2 cut(s) 491, 591
SphI GCATGC 1 cut(s) 923
Sse9I AATT 4 cut(s) 816, 830, 891, 1063
SsiI CCGC 2 cut(s) 555, 698
StyD4I CCNGG 1 cut(s) 251
StyI CCWWGG 3 cut(s) 144, 461, 835
TaiI ACGT 1 cut(s) 109
TaqI TCGA 5 cut(s) 48, 172, 182, 385, 401
TasI AATT 4 cut(s) 816, 830, 891, 1063
TfiI GAWTC 3 cut(s) 99, 230, 875
Tru1I TTAA 3 cut(s) 39, 242, 825
Tru9I TTAA 3 cut(s) 39, 242, 825
TscAI CASTG 3 cut(s) 162, 214, 429
TseFI GTSAC 1 cut(s) 849
TseI GCWGC 3 cut(s) 302, 445, 615
Tsp45I GTSAC 1 cut(s) 849
TspDTI ATGAA 5 cut(s) 76, 99, 222, 336, 843
TspGWI ACGGA 1 cut(s) 574
TspRI CASTG 3 cut(s) 162, 214, 429
VneI GTGCAC 1 cut(s) 265
XapI RAATTY 2 cut(s) 830, 891
XceI RCATGY 4 cut(s) 379, 857, 923, 967
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 178
Zsp2I ATGCAT 1 cut(s) 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.