Rroxscaffold_7G00169250
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000652
Physical Location & Seq
Reverse (-)
9944010 .. 9944732
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00169250.1

Sequence Viewer

Length: 420 bp
ATGCACCGGGATACGGTAGAAGATGGTGGCATTTATATGGGAGCTATGTTCTTCACAATGATGGTTATTATGTTCAATGGATACTCGGACCTTGCTATGACTCTCATGAAACTTCCTGTGTTTTACAAGCAAAGGGACCTGCTCTTCTATCCTGCTTGGGCATACTCTTTACCAACGGTGATTATAAGAATCCCCATGACCTTTGTGGAAGTTTCCATTTGGATGGCCATCACTTACTACGGTATTGGTTATGATCCAAGCATTGGAAGTGATATAAATATGGATGTTAAAAAGATGACCCTTTGTGATCCGGAGGAGATGAAGAACTGGTTGTTGTGGGGATATTGGCTCTCACCGATGATGTACGGAACGAATGCAATGGTGTCAATGAATTTTTTGGAAAAAGTTGGAGACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

139

Amino Acids

16.19

Weight (kDa)

4.61

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 12 - 88 3e-16 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 185
Acc36I ACCTGC 1 cut(s) 147
AccB7I CCANNNNNTGG 1 cut(s) 263
AccIII TCCGGA 1 cut(s) 310
AclWI GGATC 2 cut(s) 248, 302
AcoI YGGCCR 1 cut(s) 225
AcsI RAATTY 1 cut(s) 391
AfaI GTAC 1 cut(s) 365
AfiI CCNNNNNNNGG 2 cut(s) 13, 263
AflIII ACRYGT 1 cut(s) 414
AgsI TTSAA 1 cut(s) 76
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
Alw26I GTCTC 1 cut(s) 405
AlwI GGATC 2 cut(s) 248, 302
Aor13HI TCCGGA 1 cut(s) 310
AoxI GGCC 1 cut(s) 225
ApoI RAATTY 1 cut(s) 391
AspS9I GGNCC 2 cut(s) 88, 136
AsuC2I CCSGG 1 cut(s) 8
AsuHPI GGTGA 2 cut(s) 190, 345
AvaII GGWCC 2 cut(s) 88, 136
BalI TGGCCA 1 cut(s) 227
BccI CCATC 4 cut(s) 17, 55, 217, 236
BciVI GTATCC 2 cut(s) 4, 74
BcnI CCSGG 1 cut(s) 8
BcoDI GTCTC 1 cut(s) 405
BfuAI ACCTGC 1 cut(s) 147
BfuI GTATCC 2 cut(s) 4, 74
Bme1390I CCNGG 1 cut(s) 8
Bme18I GGWCC 2 cut(s) 88, 136
BmgT120I GGNCC 2 cut(s) 88, 136
BmiI GGNNCC 1 cut(s) 137
BmrFI CCNGG 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 8
BsaBI GATNNNNATC 1 cut(s) 227
BsaWI WCCGGW 1 cut(s) 310
Bsc4I CCNNNNNNNGG 2 cut(s) 13, 263
Bse1I ACTGG 1 cut(s) 332
Bse3DI GCAATG 1 cut(s) 384
Bse8I GATNNNNATC 1 cut(s) 227
BseAI TCCGGA 1 cut(s) 310
BseGI GGATG 2 cut(s) 228, 289
BseJI GATNNNNATC 1 cut(s) 227
BseLI CCNNNNNNNGG 2 cut(s) 13, 263
BseMI GCAATG 1 cut(s) 384
BseNI ACTGG 1 cut(s) 332
BseRI GAGGAG 1 cut(s) 329
BshFI GGCC 1 cut(s) 227
BsiSI CCGG 2 cut(s) 7, 311
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 13, 263
BsmAI GTCTC 1 cut(s) 405
BsmFI GGGAC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 379
BsnI GGCC 1 cut(s) 227
Bsp13I TCCGGA 1 cut(s) 310
Bsp143I GATC 2 cut(s) 253, 307
BspANI GGCC 1 cut(s) 227
BspEI TCCGGA 1 cut(s) 310
BspHI TCATGA 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 137
BspMI ACCTGC 1 cut(s) 147
BspPI GGATC 2 cut(s) 248, 302
BspQI GCTCTTC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 1 cut(s) 332
BssMI GATC 2 cut(s) 253, 307
Bst4CI ACNGT 3 cut(s) 16, 178, 242
Bst6I CTCTTC 1 cut(s) 149
BstF5I GGATG 2 cut(s) 228, 289
BstKTI GATC 2 cut(s) 256, 310
BstMAI GTCTC 1 cut(s) 405
BstMBI GATC 2 cut(s) 253, 307
BstNSI RCATGY 1 cut(s) 418
BstSCI CCNGG 1 cut(s) 6
BstXI CCANNNNNNTGG 1 cut(s) 223
BsuI GTATCC 2 cut(s) 4, 74
BsuRI GGCC 1 cut(s) 227
BtsCI GGATG 2 cut(s) 228, 289
BveI ACCTGC 1 cut(s) 147
CciI TCATGA 1 cut(s) 105
Cfr13I GGNCC 2 cut(s) 88, 136
Csp6I GTAC 1 cut(s) 364
CviAII CATG 3 cut(s) 106, 196, 415
CviJI RGCY 3 cut(s) 44, 227, 349
CviKI_1 RGCY 3 cut(s) 44, 227, 349
CviQI GTAC 1 cut(s) 364
DpnI GATC 2 cut(s) 255, 309
DpnII GATC 2 cut(s) 253, 307
EaeI YGGCCR 1 cut(s) 225
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco47I GGWCC 2 cut(s) 88, 136
EcoO109I RGGNCCY 1 cut(s) 136
FaeI CATG 3 cut(s) 109, 199, 418
FaqI GGGAC 1 cut(s) 149
FatI CATG 3 cut(s) 105, 195, 414
FokI GGATG 2 cut(s) 235, 296
HaeIII GGCC 1 cut(s) 227
HapII CCGG 2 cut(s) 7, 311
Hin1II CATG 3 cut(s) 109, 199, 418
HinfI GANTC 2 cut(s) 100, 189
HpaII CCGG 2 cut(s) 7, 311
HphI GGTGA 2 cut(s) 190, 345
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 106, 311
HpyCH4III ACNGT 3 cut(s) 16, 178, 242
HpyCH4V TGCA 2 cut(s) 4, 377
Hsp92II CATG 3 cut(s) 109, 199, 418
Kpn2I TCCGGA 1 cut(s) 310
Kzo9I GATC 2 cut(s) 253, 307
LguI GCTCTTC 1 cut(s) 149
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 6 cut(s) 20, 129, 152, 165, 313, 324
MalI GATC 2 cut(s) 255, 309
MboI GATC 2 cut(s) 253, 307
MboII GAAGA 4 cut(s) 32, 43, 136, 334
MlsI TGGCCA 1 cut(s) 227
MluCI AATT 1 cut(s) 391
MluNI TGGCCA 1 cut(s) 227
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 1 cut(s) 388
MnlI CCTC 1 cut(s) 307
Mox20I TGGCCA 1 cut(s) 227
MroI TCCGGA 1 cut(s) 310
MscI TGGCCA 1 cut(s) 227
MseI TTAA 1 cut(s) 288
MslI CAYNNNNRTG 3 cut(s) 35, 59, 221
Msp20I TGGCCA 1 cut(s) 227
MspI CCGG 2 cut(s) 7, 311
MspR9I CCNGG 1 cut(s) 8
Mva1269I GAATGC 1 cut(s) 379
NciI CCSGG 1 cut(s) 8
NdeII GATC 2 cut(s) 253, 307
NlaIII CATG 3 cut(s) 109, 199, 418
NlaIV GGNNCC 1 cut(s) 137
NspI RCATGY 1 cut(s) 418
PagI TCATGA 1 cut(s) 105
PciI ACATGT 1 cut(s) 414
PciSI GCTCTTC 1 cut(s) 149
PctI GAATGC 1 cut(s) 379
PfeI GAWTC 1 cut(s) 189
PflMI CCANNNNNTGG 1 cut(s) 263
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PpuMI RGGWCCY 1 cut(s) 136
PscI ACATGT 1 cut(s) 414
PsiI TTATAA 1 cut(s) 185
Psp5II RGGWCCY 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 137
PspPI GGNCC 2 cut(s) 88, 136
PspPPI RGGWCCY 1 cut(s) 136
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
RseI CAYNNNNRTG 3 cut(s) 35, 59, 221
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 1 cut(s) 288
Sau3AI GATC 2 cut(s) 253, 307
Sau96I GGNCC 2 cut(s) 88, 136
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 8
SetI ASST 4 cut(s) 46, 93, 141, 203
SinI GGWCC 2 cut(s) 88, 136
SmiMI CAYNNNNRTG 3 cut(s) 35, 59, 221
Sse9I AATT 1 cut(s) 391
StyD4I CCNGG 1 cut(s) 6
TaaI ACNGT 3 cut(s) 16, 178, 242
TasI AATT 1 cut(s) 391
TfiI GAWTC 1 cut(s) 189
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TspDTI ATGAA 3 cut(s) 122, 335, 404
TspGWI ACGGA 1 cut(s) 381
Van91I CCANNNNNTGG 1 cut(s) 263
VpaK11BI GGWCC 2 cut(s) 88, 136
XapI RAATTY 1 cut(s) 391
XceI RCATGY 1 cut(s) 418
XcmI CCANNNNNNNNNTGG 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.