Rmu_sc0025894.1_g000001
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025894.1
OG0000652
Physical Location & Seq
Forward (+)
187 .. 483
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025894.1_g000001.1.cds

Sequence Viewer

Length: 297 bp
atgacactgttcctacgaactgagatgcaccgcgattcagtaattaatggaggaatttatgctggcgcattattcttctccttggttgctgttatgttcaatggaatggcagagctttctatgactatagccaagcttccagtgttttataagcacagaaagctgctcttctttccaccatgggcatatgcacttccggcatggctcctcaagatccctctcacctgtgttgaagttggtgtttgggtatttatcacctattatgtcattggctttgatccaaatgttggaaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

98

Amino Acids

11.19

Weight (kDa)

9.25

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
AccB7I CCANNNNNTGG 1 cut(s) 287
AccII CGCG 1 cut(s) 33
AciI CCGC 1 cut(s) 31
AclWI GGATC 2 cut(s) 208, 272
AcsI RAATTY 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 287
AgsI TTSAA 2 cut(s) 100, 233
AluBI AGCT 3 cut(s) 115, 136, 163
AluI AGCT 3 cut(s) 115, 136, 163
AlwI GGATC 2 cut(s) 208, 272
ApeKI GCWGC 1 cut(s) 163
ApoI RAATTY 1 cut(s) 54
AseI ATTAAT 1 cut(s) 45
AspLEI GCGC 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 214, 247
BbvI GCAGC 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 126
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
BmiI GGNNCC 1 cut(s) 206
BmsI GCATC 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 194
BsaJI CCNNGG 2 cut(s) 81, 179
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 140
BseDI CCNNGG 2 cut(s) 81, 179
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 140
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 33
BsiSI CCGG 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 287
Bsp143I GATC 2 cut(s) 213, 277
Bsp19I CCATGG 1 cut(s) 179
BspACI CCGC 1 cut(s) 31
BspCNI CTCAG 1 cut(s) 13
BspFNI CGCG 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 206
BspPI GGATC 2 cut(s) 208, 272
BspQI GCTCTTC 1 cut(s) 173
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 81, 179
BssMI GATC 2 cut(s) 213, 277
BssT1I CCWWGG 2 cut(s) 81, 179
Bst4CI ACNGT 1 cut(s) 9
Bst6I CTCTTC 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 21
BstDSI CCRYGG 1 cut(s) 179
BstFNI CGCG 1 cut(s) 33
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 2 cut(s) 216, 280
BstMBI GATC 2 cut(s) 213, 277
BstMWI GCNNNNNNNGC 2 cut(s) 160, 197
BstSFI CTRYAG 1 cut(s) 126
BstUI CGCG 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 179
BtsIMutI CAGTG 2 cut(s) 5, 147
Cac8I GCNNGC 1 cut(s) 64
CfoI GCGC 1 cut(s) 68
CviAII CATG 2 cut(s) 180, 201
CviJI RGCY 6 cut(s) 115, 131, 136, 163, 205, 273
CviKI_1 RGCY 6 cut(s) 115, 131, 136, 163, 205, 273
DdeI CTNAG 1 cut(s) 21
DpnI GATC 2 cut(s) 215, 279
DpnII GATC 2 cut(s) 213, 277
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco130I CCWWGG 2 cut(s) 81, 179
EcoT14I CCWWGG 2 cut(s) 81, 179
ErhI CCWWGG 2 cut(s) 81, 179
FaeI CATG 2 cut(s) 183, 204
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 2 cut(s) 179, 200
FauNDI CATATG 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 164
GlaI GCGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 164
HapII CCGG 1 cut(s) 197
HhaI GCGC 1 cut(s) 68
Hin1II CATG 2 cut(s) 183, 204
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 1 cut(s) 35
HpaII CCGG 1 cut(s) 197
HphI GGTGA 2 cut(s) 214, 247
Hpy188III TCNNGA 1 cut(s) 211
HpyAV CCTTC 1 cut(s) 285
HpyCH4III ACNGT 1 cut(s) 9
HpyCH4V TGCA 2 cut(s) 28, 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 197
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 2 cut(s) 183, 204
HspAI GCGC 1 cut(s) 66
Kzo9I GATC 2 cut(s) 213, 277
LguI GCTCTTC 1 cut(s) 173
LmnI GCTCC 1 cut(s) 210
LpnPI CCDG 4 cut(s) 48, 153, 210, 238
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 1 cut(s) 15
MalI GATC 2 cut(s) 215, 279
MboI GATC 2 cut(s) 213, 277
MboII GAAGA 2 cut(s) 67, 160
MflI RGATCY 1 cut(s) 213
MluCI AATT 2 cut(s) 42, 54
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 3 cut(s) 44, 218, 228
MseI TTAA 1 cut(s) 45
MspI CCGG 1 cut(s) 197
MvnI CGCG 1 cut(s) 33
MwoI GCNNNNNNNGC 2 cut(s) 160, 197
NcoI CCATGG 1 cut(s) 179
NdeI CATATG 1 cut(s) 187
NdeII GATC 2 cut(s) 213, 277
NlaIII CATG 2 cut(s) 183, 204
NlaIV GGNNCC 1 cut(s) 206
PciSI GCTCTTC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 35
PflMI CCANNNNNTGG 1 cut(s) 287
PkrI GCNGC 1 cut(s) 165
PshBI ATTAAT 1 cut(s) 45
PsiI TTATAA 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 206
PsuI RGATCY 1 cut(s) 213
SapI GCTCTTC 1 cut(s) 173
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 2 cut(s) 213, 277
SetI ASST 6 cut(s) 117, 138, 165, 227, 260, 296
SfaNI GCATC 1 cut(s) 15
SfcI CTRYAG 1 cut(s) 126
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 2 cut(s) 42, 54
SsiI CCGC 1 cut(s) 31
StyI CCWWGG 2 cut(s) 81, 179
TaaI ACNGT 1 cut(s) 9
TasI AATT 2 cut(s) 42, 54
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 2 cut(s) 12, 147
TseI GCWGC 1 cut(s) 163
TspRI CASTG 2 cut(s) 12, 147
Van91I CCANNNNNTGG 1 cut(s) 287
VspI ATTAAT 1 cut(s) 45
XapI RAATTY 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.