Rh5CG555400

ribosomal protein L4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000652
Physical Location & Seq
Reverse (-)
77302378 .. 77304281
1904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG555400.1

Sequence Viewer

Length: 333 bp
ATGTTCTTGCTAGGCCTGTGGTTAGTTTGGTTTAGCCACTGTTGTTGTGGAGTATGGCTTTGCCATGTTTCCAAGGGTGGATTAGTGTTTTGTGCTTGTCGAATGCTTTCGACATTAGTCTTGACCCATGAGTCGAGTGGAGGTGCATTTTGCTCTGATTCATTGTCCTTAAAGCCTCCTGGGGCTTCGGAGTGCACTACAGAAGACTATGGATGGGAAGCCATTCTACTGTTGTTTCTGGGTGGTTTTCAGAATCCCGGCCAGTCTCGCACAGATAAGGCTAGTAGAAAGACTTACTTCAACAACCCGATGTGGCCTGACTGCGAATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L4

Protein Analysis

110

Amino Acids

12.17

Weight (kDa)

5.81

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 130
AcoI YGGCCR 1 cut(s) 259
AgsI TTSAA 1 cut(s) 301
AjnI CCWGG 1 cut(s) 178
Alw21I GWGCWC 1 cut(s) 197
Alw26I GTCTC 1 cut(s) 270
Alw44I GTGCAC 1 cut(s) 193
AoxI GGCC 3 cut(s) 13, 259, 314
ApaLI GTGCAC 1 cut(s) 193
Asp700I GAANNNNTTC 2 cut(s) 106, 222
AsuC2I CCSGG 1 cut(s) 258
BaeGI GKGCMC 1 cut(s) 197
BarI GAAGNNNNNNTAC 2 cut(s) 210, 242
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 197
BccI CCATC 1 cut(s) 207
BciT130I CCWGG 1 cut(s) 180
BcnI CCSGG 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 2 cut(s) 11, 282
BfmI CTRYAG 1 cut(s) 198
Bme1390I CCNGG 2 cut(s) 180, 258
BmrFI CCNGG 2 cut(s) 180, 258
BoxI GACNNNNGTC 1 cut(s) 116
BpiI GAAGAC 1 cut(s) 210
BpuMI CCSGG 1 cut(s) 258
BsaJI CCNNGG 2 cut(s) 72, 179
Bse1I ACTGG 1 cut(s) 262
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 2 cut(s) 72, 179
BseGI GGATG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 262
BseSI GKGCMC 1 cut(s) 197
BshFI GGCC 3 cut(s) 15, 261, 316
BsiHKAI GWGCWC 1 cut(s) 197
BsiSI CCGG 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 270
BsmI GAATGC 2 cut(s) 108, 332
BsnI GGCC 3 cut(s) 15, 261, 316
Bsp1286I GDGCHC 1 cut(s) 197
BspANI GGCC 3 cut(s) 15, 261, 316
BsrI ACTGG 1 cut(s) 262
BssECI CCNNGG 2 cut(s) 72, 179
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 2 cut(s) 41, 231
BstF5I GGATG 1 cut(s) 218
BstMAI GTCTC 1 cut(s) 270
BstMWI GCNNNNNNNGC 1 cut(s) 267
BstNI CCWGG 1 cut(s) 180
BstPAI GACNNNNGTC 1 cut(s) 116
BstSCI CCNGG 2 cut(s) 178, 256
BstSFI CTRYAG 1 cut(s) 198
BstSLI GKGCMC 1 cut(s) 197
BstV2I GAAGAC 1 cut(s) 210
BsuRI GGCC 3 cut(s) 15, 261, 316
BtsCI GGATG 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 37
CspCI CAANNNNNGTGG 2 cut(s) 26, 61
CviAII CATG 2 cut(s) 65, 128
CviJI RGCY 9 cut(s) 15, 36, 58, 175, 185, 221, 261, 281, 316
CviKI_1 RGCY 9 cut(s) 15, 36, 58, 175, 185, 221, 261, 281, 316
DrdI GACNNNNNNGTC 1 cut(s) 130
DseDI GACNNNNNNGTC 1 cut(s) 130
EaeI YGGCCR 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 72
Eco147I AGGCCT 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 2 cut(s) 68, 131
FaiI YATR 4 cut(s) 55, 66, 129, 210
FalI AAGNNNNNCTT 2 cut(s) 281, 313
FatI CATG 2 cut(s) 64, 127
FokI GGATG 1 cut(s) 225
FspBI CTAG 2 cut(s) 11, 282
HaeIII GGCC 3 cut(s) 15, 261, 316
HapII CCGG 1 cut(s) 258
Hin1II CATG 2 cut(s) 68, 131
HinfI GANTC 3 cut(s) 131, 158, 253
HpaII CCGG 1 cut(s) 258
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 3 cut(s) 157, 190, 252
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 195
HpyCH4III ACNGT 2 cut(s) 41, 231
HpyCH4V TGCA 2 cut(s) 146, 195
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
Hsp92II CATG 2 cut(s) 68, 131
LpnPI CCDG 6 cut(s) 29, 165, 192, 224, 271, 275
MaeI CTAG 2 cut(s) 11, 282
MboII GAAGA 1 cut(s) 215
MhlI GDGCHC 1 cut(s) 197
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 2 cut(s) 134, 186
MroXI GAANNNNTTC 2 cut(s) 106, 222
MseI TTAA 1 cut(s) 170
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 2 cut(s) 180, 258
Mva1269I GAATGC 2 cut(s) 108, 332
MvaI CCWGG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 267
NciI CCSGG 1 cut(s) 258
NlaIII CATG 2 cut(s) 68, 131
PceI AGGCCT 1 cut(s) 15
PctI GAATGC 2 cut(s) 108, 332
PdmI GAANNNNTTC 2 cut(s) 106, 222
PfeI GAWTC 2 cut(s) 158, 253
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PshAI GACNNNNGTC 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
SaqAI TTAA 1 cut(s) 170
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 2 cut(s) 180, 258
SduI GDGCHC 1 cut(s) 197
SetI ASST 1 cut(s) 145
SfcI CTRYAG 1 cut(s) 198
SseBI AGGCCT 1 cut(s) 15
SspMI CTAG 2 cut(s) 11, 282
StuI AGGCCT 1 cut(s) 15
StyD4I CCNGG 2 cut(s) 178, 256
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 2 cut(s) 41, 231
TaqI TCGA 3 cut(s) 100, 110, 134
TfiI GAWTC 2 cut(s) 158, 253
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TscAI CASTG 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 150
TspRI CASTG 1 cut(s) 44
VneI GTGCAC 1 cut(s) 193
XcmI CCANNNNNNNNNTGG 2 cut(s) 44, 134
XmnI GAANNNNTTC 2 cut(s) 106, 222
XspI CTAG 2 cut(s) 11, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.