Rmu_sc0005406.1_g000008
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005406.1
OG0000652
Physical Location & Seq
Reverse (-)
64402 .. 68832
4431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005406.1_g000008.1.cds

Sequence Viewer

Length: 579 bp
atgttaggtcttatcttccatggtgggctcgacgagggaacaaggcggagctccggcatggactgcatcattggtggatttgagaaaagagatgagagaagaggtgtgtcggaggaggagaaggaggagaacggagacggaggcagagaaggaggagagtggagatggaggccgaggcggagagtagttgggtgctggttggaggcggaggatgaggaagaggaggtcgggtgctgtgtcgttgtgggcctgtggttagtttggtttagccactgtaggctgacaataagcacttggaatgttgctggaagagttccggatgaaaaccttgatattgatgattggatttcttcagaagagccatcggatatctacatgttcaatggaatggcagagctttcgatgactatagccaagcttccagtgttttataagcacagaaagctgctcttctttccaccatgggcatatgcacttccggcatggctcctcaagatccctctcacctgtgttgaagttggtgtttgggtatttatcacctattatgtcattggctttgatccaaatgttggaaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

192

Amino Acids

22.07

Weight (kDa)

4.8

Isoelectric Point (pI)

58.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
AccB7I CCANNNNNTGG 1 cut(s) 569
AccIII TCCGGA 1 cut(s) 316
AciI CCGC 3 cut(s) 46, 178, 206
AclWI GGATC 2 cut(s) 490, 554
AcuI CTGAAG 1 cut(s) 336
AfiI CCNNNNNNNGG 1 cut(s) 569
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 2 cut(s) 382, 515
AluBI AGCT 4 cut(s) 51, 397, 418, 445
AluI AGCT 4 cut(s) 51, 397, 418, 445
Alw21I GWGCWC 1 cut(s) 53
Alw26I GTCTC 1 cut(s) 129
AlwI GGATC 2 cut(s) 490, 554
Aor13HI TCCGGA 1 cut(s) 316
AoxI GGCC 2 cut(s) 170, 247
ApeKI GCWGC 1 cut(s) 445
AspS9I GGNCC 1 cut(s) 247
AsuHPI GGTGA 2 cut(s) 496, 529
BanII GRGCYC 2 cut(s) 30, 53
Bbv12I GWGCWC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 432
BccI CCATC 2 cut(s) 159, 370
BcgI CGANNNNNNTGC 2 cut(s) 381, 415
BcoDI GTCTC 1 cut(s) 129
BfmI CTRYAG 2 cut(s) 274, 408
BisI GCNGC 1 cut(s) 446
BlsI GCNGC 1 cut(s) 447
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 1 cut(s) 488
BmsI GCATC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 476
BsaJI CCNNGG 3 cut(s) 19, 173, 461
BsaWI WCCGGW 1 cut(s) 316
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 1 cut(s) 569
Bse1I ACTGG 1 cut(s) 422
BseAI TCCGGA 1 cut(s) 316
BseDI CCNNGG 3 cut(s) 19, 173, 461
BseGI GGATG 2 cut(s) 217, 325
BseLI CCNNNNNNNGG 1 cut(s) 569
BseNI ACTGG 1 cut(s) 422
BseRI GAGGAG 6 cut(s) 128, 131, 140, 168, 236, 479
BseXI GCAGC 1 cut(s) 432
BshFI GGCC 2 cut(s) 172, 249
BsiHKAI GWGCWC 1 cut(s) 53
BsiSI CCGG 3 cut(s) 54, 317, 479
BslI CCNNNNNNNGG 1 cut(s) 569
BsmAI GTCTC 1 cut(s) 129
BsmBI CGTCTC 1 cut(s) 129
BsnI GGCC 2 cut(s) 172, 249
Bsp1286I GDGCHC 2 cut(s) 30, 53
Bsp13I TCCGGA 1 cut(s) 316
Bsp143I GATC 2 cut(s) 495, 559
Bsp19I CCATGG 2 cut(s) 19, 461
BspACI CCGC 3 cut(s) 46, 178, 206
BspANI GGCC 2 cut(s) 172, 249
BspEI TCCGGA 1 cut(s) 316
BspLI GGNNCC 1 cut(s) 488
BspPI GGATC 2 cut(s) 490, 554
BspQI GCTCTTC 2 cut(s) 351, 455
BsrI ACTGG 1 cut(s) 422
BssECI CCNNGG 3 cut(s) 19, 173, 461
BssMI GATC 2 cut(s) 495, 559
BssT1I CCWWGG 2 cut(s) 19, 461
Bst4CI ACNGT 1 cut(s) 275
Bst6I CTCTTC 5 cut(s) 94, 213, 304, 351, 455
BstAPI GCANNNNNTGC 1 cut(s) 63
BstDSI CCRYGG 2 cut(s) 19, 461
BstF5I GGATG 2 cut(s) 217, 325
BstKTI GATC 2 cut(s) 498, 562
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 2 cut(s) 495, 559
BstMWI GCNNNNNNNGC 3 cut(s) 63, 442, 479
BstNSI RCATGY 1 cut(s) 379
BstSFI CTRYAG 2 cut(s) 274, 408
BstV1I GCAGC 1 cut(s) 432
BstX2I RGATCY 1 cut(s) 495
BstYI RGATCY 1 cut(s) 495
BsuRI GGCC 2 cut(s) 172, 249
BtgI CCRYGG 2 cut(s) 19, 461
BtsCI GGATG 2 cut(s) 217, 325
BtsIMutI CAGTG 2 cut(s) 271, 429
Cfr13I GGNCC 1 cut(s) 247
CviAII CATG 5 cut(s) 20, 58, 376, 462, 483
DpnI GATC 2 cut(s) 497, 561
DpnII GATC 2 cut(s) 495, 559
Eam1104I CTCTTC 5 cut(s) 94, 213, 304, 351, 455
EarI CTCTTC 5 cut(s) 94, 213, 304, 351, 455
EciI GGCGGA 3 cut(s) 61, 193, 221
Ecl136II GAGCTC 1 cut(s) 51
Eco130I CCWWGG 2 cut(s) 19, 461
Eco24I GRGCYC 2 cut(s) 30, 53
Eco32I GATATC 1 cut(s) 370
Eco53kI GAGCTC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 336
EcoICRI GAGCTC 1 cut(s) 51
EcoRV GATATC 1 cut(s) 370
EcoT14I CCWWGG 2 cut(s) 19, 461
EcoT38I GRGCYC 2 cut(s) 30, 53
ErhI CCWWGG 2 cut(s) 19, 461
Esp3I CGTCTC 1 cut(s) 129
FaeI CATG 5 cut(s) 23, 61, 379, 465, 486
FalI AAGNNNNNCTT 2 cut(s) 434, 466
FatI CATG 5 cut(s) 19, 57, 375, 461, 482
FauNDI CATATG 1 cut(s) 469
Fnu4HI GCNGC 1 cut(s) 446
FokI GGATG 2 cut(s) 224, 332
FriOI GRGCYC 2 cut(s) 30, 53
Fsp4HI GCNGC 1 cut(s) 446
GluI GCNGC 1 cut(s) 446
HaeIII GGCC 2 cut(s) 172, 249
HapII CCGG 3 cut(s) 54, 317, 479
Hin1II CATG 5 cut(s) 23, 61, 379, 465, 486
HindIII AAGCTT 1 cut(s) 416
HpaII CCGG 3 cut(s) 54, 317, 479
HphI GGTGA 2 cut(s) 496, 529
Hpy188I TCNGA 3 cut(s) 112, 355, 367
Hpy188III TCNNGA 2 cut(s) 317, 493
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 3 cut(s) 115, 143, 567
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4V TGCA 2 cut(s) 66, 473
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 442, 479
Hsp92II CATG 5 cut(s) 23, 61, 379, 465, 486
Kpn2I TCCGGA 1 cut(s) 316
Kzo9I GATC 2 cut(s) 495, 559
LguI GCTCTTC 2 cut(s) 351, 455
LmnI GCTCC 3 cut(s) 48, 56, 492
LpnPI CCDG 8 cut(s) 67, 181, 263, 291, 330, 435, 492, 520
Lsp1109I GCAGC 1 cut(s) 432
LweI GCATC 1 cut(s) 75
MalI GATC 2 cut(s) 497, 561
MboI GATC 2 cut(s) 495, 559
MboII GAAGA 7 cut(s) 7, 111, 230, 321, 342, 368, 442
MflI RGATCY 1 cut(s) 495
MhlI GDGCHC 2 cut(s) 30, 53
MmeI TCCRAC 3 cut(s) 90, 180, 550
MroI TCCGGA 1 cut(s) 316
MspI CCGG 3 cut(s) 54, 317, 479
MwoI GCNNNNNNNGC 3 cut(s) 63, 442, 479
NcoI CCATGG 2 cut(s) 19, 461
NdeI CATATG 1 cut(s) 469
NdeII GATC 2 cut(s) 495, 559
NlaIII CATG 5 cut(s) 23, 61, 379, 465, 486
NlaIV GGNNCC 1 cut(s) 488
NmeAIII GCCGAG 1 cut(s) 198
NspI RCATGY 1 cut(s) 379
PciI ACATGT 1 cut(s) 375
PciSI GCTCTTC 2 cut(s) 351, 455
PflMI CCANNNNNTGG 1 cut(s) 569
PkrI GCNGC 1 cut(s) 447
PscI ACATGT 1 cut(s) 375
PsiI TTATAA 1 cut(s) 432
Psp124BI GAGCTC 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 488
PspPI GGNCC 1 cut(s) 247
PsuI RGATCY 1 cut(s) 495
SacI GAGCTC 1 cut(s) 53
SapI GCTCTTC 2 cut(s) 351, 455
SatI GCNGC 1 cut(s) 446
Sau3AI GATC 2 cut(s) 495, 559
Sau96I GGNCC 1 cut(s) 247
SduI GDGCHC 2 cut(s) 30, 53
SfaNI GCATC 1 cut(s) 75
SfcI CTRYAG 2 cut(s) 274, 408
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
SsiI CCGC 3 cut(s) 46, 178, 206
SstI GAGCTC 1 cut(s) 53
StyI CCWWGG 2 cut(s) 19, 461
TaaI ACNGT 1 cut(s) 275
TaqI TCGA 2 cut(s) 30, 401
TscAI CASTG 2 cut(s) 278, 429
TseI GCWGC 1 cut(s) 445
TspDTI ATGAA 1 cut(s) 336
TspGWI ACGGA 2 cut(s) 147, 153
TspRI CASTG 2 cut(s) 278, 429
Van91I CCANNNNNTGG 1 cut(s) 569
XceI RCATGY 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.