Rh6DG217600

Metal transporter

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
38793177 .. 38814297
21121 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG217600.1

Sequence Viewer

Length: 669 bp
ATGGATATGTTCTGTCGTGTTTCACTTGCGGAGGGCCTGAGATTTGACAACGGTGATGTGGTAGCTGGCGGTGACGTCGACAAGATCATGCCTGGACAGCAGGGTGGTGGCCCGGCCGAGGCTGTACTGTTCAAGGGAAAGCATTTGGCTGAGCACTGTAGAGCTAAATATCCTAAGAAAACAAACTTCATCCTTTGGGTTCTTGCTGAGATTTCTATAGTTGCATGTGACATTCCTGAAGTGATTGGAACTGCCTTTGCATTGGACATGCTCTTCAATATACCTATATGGATTGGTATTCTCCTGACAGGACTCAGTACATTGATGCTTCTTGCATTACAACAATATGGGGTTAGGAAACTTGAATTTTTGATTGCGTTCCTTGTACTCACAATTGCTGGATGCTTCTTTACTGAGCTTGGCTATGCAAAGCCTGCTGCTACAGAATACATAAACACAAAGGATGTGAGGGTGACAGTAAGCACTTGGAATGTTGCTGGAAGAGTTCCGGATGAAGACCTTGATATTGATGATTGGATTTCTTTAGAAGAGCCATCAGATATCTACATTTTCGGTTTTCAAGAGGTTGTTCCTTTGAATGCTGGGAATATATTTGGAGCAGAGGATAACAAACCAATACCAAAAACTTCAATAACAAGGTTAACCTAA

Protein Analysis

222

Amino Acids

24.39

Weight (kDa)

4.65

Isoelectric Point (pI)

31.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nramp PF01566 44 - 151 3.7e-31 Natural resistance-associated macrophage protein-like
Exo_endo_phos2 PF22669 162 - 207 6.9e-06 Endonuclease/Exonuclease/phosphatase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000652)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 78
AccI GTMKAC 1 cut(s) 78
AccIII TCCGGA 1 cut(s) 508
AciI CCGC 2 cut(s) 29, 69
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 1 cut(s) 365
AcuI CTGAAG 1 cut(s) 258
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 3 cut(s) 126, 319, 387
AfiI CCNNNNNNNGG 1 cut(s) 118
AgsI TTSAA 6 cut(s) 133, 277, 365, 581, 598, 651
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 3 cut(s) 65, 164, 418
AluI AGCT 3 cut(s) 65, 164, 418
Alw21I GWGCWC 1 cut(s) 156
Aor13HI TCCGGA 1 cut(s) 508
AoxI GGCC 3 cut(s) 34, 109, 114
ApeKI GCWGC 1 cut(s) 437
ApoI RAATTY 1 cut(s) 365
AspS9I GGNCC 2 cut(s) 34, 110
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 3 cut(s) 65, 83, 484
BbsI GAAGAC 1 cut(s) 522
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 424
BccI CCATC 1 cut(s) 562
BciT130I CCWGG 1 cut(s) 93
BcnI CCSGG 1 cut(s) 113
BfmI CTRYAG 3 cut(s) 157, 216, 441
BisI GCNGC 1 cut(s) 438
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 439
Bme1390I CCNGG 2 cut(s) 93, 113
BmgT120I GGNCC 2 cut(s) 34, 110
BmrFI CCNGG 2 cut(s) 93, 113
BmsI GCATC 2 cut(s) 315, 392
BpiI GAAGAC 1 cut(s) 522
Bpu1102I GCTNAGC 1 cut(s) 150
BpuMI CCSGG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 117
BsaWI WCCGGW 1 cut(s) 508
Bsc4I CCNNNNNNNGG 1 cut(s) 118
BseAI TCCGGA 1 cut(s) 508
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 4 cut(s) 189, 407, 469, 517
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMII CTCAG 5 cut(s) 29, 141, 198, 328, 405
BseX3I CGGCCG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 424
BseYI CCCAGC 1 cut(s) 602
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 3 cut(s) 36, 111, 116
BsiEI CGRYCG 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 156
BsiSI CCGG 2 cut(s) 113, 509
BslI CCNNNNNNNGG 1 cut(s) 118
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 3 cut(s) 36, 111, 116
Bsp1286I GDGCHC 1 cut(s) 156
Bsp13I TCCGGA 1 cut(s) 508
Bsp143I GATC 1 cut(s) 84
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 2 cut(s) 29, 69
BspANI GGCC 3 cut(s) 36, 111, 116
BspCNI CTCAG 5 cut(s) 30, 142, 199, 327, 406
BspEI TCCGGA 1 cut(s) 508
BspQI GCTCTTC 2 cut(s) 278, 543
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 1 cut(s) 84
BssNI GRCGYC 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 4 cut(s) 53, 129, 158, 478
Bst6I CTCTTC 3 cut(s) 278, 496, 543
BstACI GRCGYC 1 cut(s) 75
BstAPI GCANNNNNTGC 1 cut(s) 434
BstC8I GCNNGC 2 cut(s) 67, 435
BstDEI CTNAG 6 cut(s) 38, 150, 174, 207, 314, 414
BstF5I GGATG 4 cut(s) 189, 407, 469, 517
BstKTI GATC 1 cut(s) 87
BstMBI GATC 1 cut(s) 84
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 2 cut(s) 97, 434
BstNI CCWGG 1 cut(s) 93
BstNSI RCATGY 2 cut(s) 228, 271
BstSCI CCNGG 2 cut(s) 91, 111
BstSFI CTRYAG 3 cut(s) 157, 216, 441
BstV1I GCAGC 1 cut(s) 424
BstV2I GAAGAC 1 cut(s) 522
BstZI CGGCCG 1 cut(s) 114
BsuRI GGCC 3 cut(s) 36, 111, 116
BtsCI GGATG 4 cut(s) 189, 407, 469, 517
BtsIMutI CAGTG 1 cut(s) 154
Cac8I GCNNGC 2 cut(s) 67, 435
Cfr13I GGNCC 2 cut(s) 34, 110
Csp6I GTAC 3 cut(s) 125, 318, 386
CviAII CATG 3 cut(s) 88, 225, 268
CviQI GTAC 3 cut(s) 125, 318, 386
DdeI CTNAG 6 cut(s) 38, 150, 174, 207, 314, 414
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
EaeI YGGCCR 1 cut(s) 114
EagI CGGCCG 1 cut(s) 114
Eam1104I CTCTTC 3 cut(s) 278, 496, 543
EarI CTCTTC 3 cut(s) 278, 496, 543
EclXI CGGCCG 1 cut(s) 114
Eco32I GATATC 1 cut(s) 562
Eco52I CGGCCG 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 258
EcoO109I RGGNCCY 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 91
EcoRV GATATC 1 cut(s) 562
FaeI CATG 3 cut(s) 91, 228, 271
FatI CATG 3 cut(s) 87, 224, 267
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 438
FokI GGATG 4 cut(s) 176, 414, 476, 524
Fsp4HI GCNGC 1 cut(s) 438
GluI GCNGC 1 cut(s) 438
GsaI CCCAGC 1 cut(s) 606
HaeIII GGCC 3 cut(s) 36, 111, 116
HapII CCGG 2 cut(s) 113, 509
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 3 cut(s) 91, 228, 271
HincII GTYRAC 2 cut(s) 79, 663
HindII GTYRAC 2 cut(s) 79, 663
HinfI GANTC 1 cut(s) 312
HpaI GTTAAC 1 cut(s) 663
HpaII CCGG 2 cut(s) 113, 509
HphI GGTGA 3 cut(s) 65, 83, 484
Hpy166II GTNNAC 2 cut(s) 79, 663
Hpy188I TCNGA 1 cut(s) 559
Hpy188III TCNNGA 4 cut(s) 236, 304, 509, 581
Hpy8I GTNNAC 2 cut(s) 79, 663
Hpy99I CGWCG 1 cut(s) 80
HpyCH4III ACNGT 4 cut(s) 53, 129, 158, 478
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 4 cut(s) 224, 260, 335, 428
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 434
HpyF3I CTNAG 6 cut(s) 38, 150, 174, 207, 314, 414
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 3 cut(s) 91, 228, 271
Kpn2I TCCGGA 1 cut(s) 508
KspAI GTTAAC 1 cut(s) 663
Kzo9I GATC 1 cut(s) 84
LguI GCTCTTC 2 cut(s) 278, 543
LmnI GCTCC 1 cut(s) 617
Lsp1109I GCAGC 1 cut(s) 424
LweI GCATC 2 cut(s) 315, 392
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 3 cut(s) 71, 227, 472
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 4 cut(s) 265, 513, 527, 560
MfeI CAATTG 1 cut(s) 393
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 2 cut(s) 365, 393
MlyI GAGTC 1 cut(s) 306
MnlI CCTC 5 cut(s) 25, 112, 462, 577, 616
MroI TCCGGA 1 cut(s) 508
MseI TTAA 1 cut(s) 662
MspI CCGG 2 cut(s) 113, 509
MspR9I CCNGG 2 cut(s) 93, 113
MunI CAATTG 1 cut(s) 393
Mva1269I GAATGC 1 cut(s) 604
MvaI CCWGG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 97, 434
NciI CCSGG 1 cut(s) 113
NdeII GATC 1 cut(s) 84
NlaIII CATG 3 cut(s) 91, 228, 271
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 3 cut(s) 71, 227, 472
NspI RCATGY 2 cut(s) 228, 271
PciSI GCTCTTC 2 cut(s) 278, 543
PctI GAATGC 1 cut(s) 604
PkrI GCNGC 1 cut(s) 439
PleI GAGTC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 91
PspFI CCCAGC 1 cut(s) 602
PspGI CCWGG 1 cut(s) 91
PspPI GGNCC 2 cut(s) 34, 110
RsaI GTAC 3 cut(s) 126, 319, 387
RsaNI GTAC 3 cut(s) 125, 318, 386
SalI GTCGAC 1 cut(s) 77
SapI GCTCTTC 2 cut(s) 278, 543
SaqAI TTAA 1 cut(s) 662
SatI GCNGC 1 cut(s) 438
Sau3AI GATC 1 cut(s) 84
Sau96I GGNCC 2 cut(s) 34, 110
SchI GAGTC 1 cut(s) 306
ScrFI CCNGG 2 cut(s) 93, 113
SduI GDGCHC 1 cut(s) 156
SetI ASST 9 cut(s) 67, 78, 166, 286, 420, 522, 588, 662, 668
SfaNI GCATC 2 cut(s) 315, 392
SfcI CTRYAG 3 cut(s) 157, 216, 441
Sse9I AATT 2 cut(s) 365, 393
SsiI CCGC 2 cut(s) 29, 69
StyD4I CCNGG 2 cut(s) 91, 111
TaaI ACNGT 4 cut(s) 53, 129, 158, 478
TaiI ACGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 78
TasI AATT 2 cut(s) 365, 393
TatI WGTACW 3 cut(s) 124, 317, 385
Tru1I TTAA 1 cut(s) 662
Tru9I TTAA 1 cut(s) 662
TscAI CASTG 1 cut(s) 161
TseFI GTSAC 3 cut(s) 71, 227, 472
TseI GCWGC 1 cut(s) 437
Tsp45I GTSAC 3 cut(s) 71, 227, 472
TspDTI ATGAA 2 cut(s) 178, 528
TspRI CASTG 1 cut(s) 161
XapI RAATTY 1 cut(s) 365
XceI RCATGY 2 cut(s) 228, 271
XmiI GTMKAC 1 cut(s) 78
ZraI GACGTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.