Rh5BG531100

ribosomal protein L4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000652
Physical Location & Seq
Reverse (-)
83595534 .. 83597437
1904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG531100.1

Sequence Viewer

Length: 318 bp
ATGTTCTTGCTAGGCCTGTGGTTAGTTTGGTTTAGCCACTGTTGTTGCCATGTTTCCAAGGGTGGATTAGTGTTTTGTGCTTGTCGAATGCTTTCGACATTAGTCTTGACCCATGAGTCGAGTGGAGGTGCATTTTGCTCTGATTCATTGTCCTTAAAGCCTCCTGGGGCTTCGGAGTGCACTACAGAAGACTATGGATGGGAAGCCATTCTACTGTTGTTTCTGGGTGGTTTTCAGAATCCCGGCCAGTCTCGCACAGATAAGGCTAGTAGAAAGACTTACTTCAACAACCCGATGTGGCCTGACTGCGAATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L4

Protein Analysis

105

Amino Acids

11.61

Weight (kDa)

5.81

Isoelectric Point (pI)

51.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 115
AcoI YGGCCR 1 cut(s) 244
AgsI TTSAA 1 cut(s) 286
AjnI CCWGG 1 cut(s) 163
Alw21I GWGCWC 1 cut(s) 182
Alw26I GTCTC 1 cut(s) 255
Alw44I GTGCAC 1 cut(s) 178
AoxI GGCC 3 cut(s) 13, 244, 299
ApaLI GTGCAC 1 cut(s) 178
Asp700I GAANNNNTTC 2 cut(s) 91, 207
AsuC2I CCSGG 1 cut(s) 243
BaeGI GKGCMC 1 cut(s) 182
BarI GAAGNNNNNNTAC 2 cut(s) 195, 227
BbsI GAAGAC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 182
BccI CCATC 1 cut(s) 192
BciT130I CCWGG 1 cut(s) 165
BcnI CCSGG 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 2 cut(s) 11, 267
BfmI CTRYAG 1 cut(s) 183
Bme1390I CCNGG 2 cut(s) 165, 243
BmrFI CCNGG 2 cut(s) 165, 243
BoxI GACNNNNGTC 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 195
BpuMI CCSGG 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 57, 164
Bse1I ACTGG 1 cut(s) 247
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 2 cut(s) 57, 164
BseGI GGATG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 247
BseSI GKGCMC 1 cut(s) 182
BshFI GGCC 3 cut(s) 15, 246, 301
BsiHKAI GWGCWC 1 cut(s) 182
BsiSI CCGG 1 cut(s) 243
BsmAI GTCTC 1 cut(s) 255
BsmI GAATGC 2 cut(s) 93, 317
BsnI GGCC 3 cut(s) 15, 246, 301
Bsp1286I GDGCHC 1 cut(s) 182
BspANI GGCC 3 cut(s) 15, 246, 301
BsrI ACTGG 1 cut(s) 247
BssECI CCNNGG 2 cut(s) 57, 164
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 41, 216
BstF5I GGATG 1 cut(s) 203
BstMAI GTCTC 1 cut(s) 255
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstNI CCWGG 1 cut(s) 165
BstPAI GACNNNNGTC 1 cut(s) 101
BstSCI CCNGG 2 cut(s) 163, 241
BstSFI CTRYAG 1 cut(s) 183
BstSLI GKGCMC 1 cut(s) 182
BstV2I GAAGAC 1 cut(s) 195
BsuRI GGCC 3 cut(s) 15, 246, 301
BtsCI GGATG 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 37
CspCI CAANNNNNGTGG 2 cut(s) 26, 61
CviAII CATG 2 cut(s) 50, 113
CviJI RGCY 8 cut(s) 15, 36, 160, 170, 206, 246, 266, 301
CviKI_1 RGCY 8 cut(s) 15, 36, 160, 170, 206, 246, 266, 301
DrdI GACNNNNNNGTC 1 cut(s) 115
DseDI GACNNNNNNGTC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 57
Eco147I AGGCCT 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 2 cut(s) 53, 116
FaiI YATR 3 cut(s) 51, 114, 195
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FatI CATG 2 cut(s) 49, 112
FokI GGATG 1 cut(s) 210
FspBI CTAG 2 cut(s) 11, 267
HaeIII GGCC 3 cut(s) 15, 246, 301
HapII CCGG 1 cut(s) 243
Hin1II CATG 2 cut(s) 53, 116
HinfI GANTC 3 cut(s) 116, 143, 238
HpaII CCGG 1 cut(s) 243
Hpy166II GTNNAC 1 cut(s) 180
Hpy188I TCNGA 3 cut(s) 142, 175, 237
Hpy188III TCNNGA 1 cut(s) 106
Hpy8I GTNNAC 1 cut(s) 180
HpyCH4III ACNGT 2 cut(s) 41, 216
HpyCH4V TGCA 2 cut(s) 131, 180
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
Hsp92II CATG 2 cut(s) 53, 116
LpnPI CCDG 6 cut(s) 29, 150, 177, 209, 256, 260
MaeI CTAG 2 cut(s) 11, 267
MboII GAAGA 1 cut(s) 200
MhlI GDGCHC 1 cut(s) 182
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 2 cut(s) 119, 171
MroXI GAANNNNTTC 2 cut(s) 91, 207
MseI TTAA 1 cut(s) 155
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 2 cut(s) 165, 243
Mva1269I GAATGC 2 cut(s) 93, 317
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 252
NciI CCSGG 1 cut(s) 243
NlaIII CATG 2 cut(s) 53, 116
PceI AGGCCT 1 cut(s) 15
PctI GAATGC 2 cut(s) 93, 317
PdmI GAANNNNTTC 2 cut(s) 91, 207
PfeI GAWTC 2 cut(s) 143, 238
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PshAI GACNNNNGTC 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
SaqAI TTAA 1 cut(s) 155
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 2 cut(s) 165, 243
SduI GDGCHC 1 cut(s) 182
SetI ASST 1 cut(s) 130
SfcI CTRYAG 1 cut(s) 183
SseBI AGGCCT 1 cut(s) 15
SspMI CTAG 2 cut(s) 11, 267
StuI AGGCCT 1 cut(s) 15
StyD4I CCNGG 2 cut(s) 163, 241
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 2 cut(s) 41, 216
TaqI TCGA 3 cut(s) 85, 95, 119
TfiI GAWTC 2 cut(s) 143, 238
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TscAI CASTG 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 135
TspRI CASTG 1 cut(s) 44
VneI GTGCAC 1 cut(s) 178
XcmI CCANNNNNNNNNTGG 1 cut(s) 119
XmnI GAANNNNTTC 2 cut(s) 91, 207
XspI CTAG 2 cut(s) 11, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.