Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000652

Physical Location & Seq

Genomic Coordinates Reverse (-)

4985661 .. 4986783

Gene Structure 1123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1039100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAAAAGTAGAAGAGGAAAGCCCTCTGAGGCCTTTTGGCCTTCACTTATGATGAAGAAATGGTTAAACATCAAGCCTAAGGAATATGACTTCAGTGCAGACGAGGTTGAAACCGAAACTGAAACTGAAACCGAAACTGAAAGCGAAGATGACGCTTACTCTCATAGAGATGCAAGAACGCACACACGCAACGATCATGGCCTTCGGGAGAAGCATTCCCTTGGCCAAAGTCCGATTTCAGATCTACCGTCTATGGGTTATCAGTTAAAACACCGGAGAGGAAAATCAGAAACCGTGCGTGCTCAGTACATAAACACAAAGGATGTGAGGGTGACAATAGGCACTTGGAATGTTGGTGGAAGACTTCCGGATGAAGATCTTGATATTGATGATTGGTTATGTAACGAAGAATCTGCAGATGTTTACATTCTTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004439 GO:0004445 GO:0005975 GO:0006066 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0030258 GO:0032501 GO:0032502 GO:0032957 GO:0033993 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042221 GO:0042578 GO:0043647 GO:0044237 GO:0044238 GO:0044255 GO:0044262 GO:0044281 GO:0044282 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046486 GO:0046488 GO:0046838 GO:0046839 GO:0046855 GO:0046856 GO:0048856 GO:0050896 GO:0052745 GO:0052866 GO:0071545 GO:0071704 GO:0090351 GO:0097305 GO:0106019 GO:1901575 GO:1901615 GO:1901616 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

146

Amino Acids

16.77

Weight (kDa)

5.14

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18010 AT4G18010
fragaria_vesca	FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica	MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica	Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata	RLG00000003205
rosa_multiflora	Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa	Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha	Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana	Rw7G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	367
AcoI	YGGCCR	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	76
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	1 cut(s)	110
Alw21I	GWGCWC	1 cut(s)	304
Aor13HI	TCCGGA	1 cut(s)	367
AoxI	GGCC	4 cut(s)	30, 38, 199, 223
AsuHPI	GGTGA	1 cut(s)	343
AxyI	CCTNAGG	1 cut(s)	78
BalI	TGGCCA	1 cut(s)	225
BbsI	GAAGAC	1 cut(s)	367
Bbv12I	GWGCWC	1 cut(s)	304
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BfmI	CTRYAG	1 cut(s)	414
BglII	AGATCT	2 cut(s)	241, 376
BmsI	GCATC	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	367
BsaBI	GATNNNNATC	1 cut(s)	375
BsaJI	CCNNGG	1 cut(s)	220
BsaWI	WCCGGW	2 cut(s)	273, 367
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse21I	CCTNAGG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	375
BseAI	TCCGGA	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	2 cut(s)	328, 376
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	2 cut(s)	18, 317
BsgI	GTGCAG	1 cut(s)	117
BshFI	GGCC	4 cut(s)	32, 40, 201, 225
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	2 cut(s)	274, 368
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	4 cut(s)	32, 40, 201, 225
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp13I	TCCGGA	1 cut(s)	367
Bsp143I	GATC	3 cut(s)	193, 241, 376
BspANI	GGCC	4 cut(s)	32, 40, 201, 225
BspCNI	CTCAG	2 cut(s)	19, 316
BspEI	TCCGGA	1 cut(s)	367
BspMAI	CTGCAG	1 cut(s)	418
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	3 cut(s)	193, 241, 376
BssT1I	CCWWGG	1 cut(s)	220
Bst4CI	ACNGT	2 cut(s)	249, 295
Bst6I	CTCTTC	1 cut(s)	7
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	3 cut(s)	27, 78, 303
BstF5I	GGATG	2 cut(s)	328, 376
BstKTI	GATC	3 cut(s)	196, 244, 379
BstMBI	GATC	3 cut(s)	193, 241, 376
BstSFI	CTRYAG	1 cut(s)	414
BstV2I	GAAGAC	1 cut(s)	367
BstX2I	RGATCY	2 cut(s)	241, 376
BstYI	RGATCY	2 cut(s)	241, 376
Bsu36I	CCTNAGG	1 cut(s)	78
BsuRI	GGCC	4 cut(s)	32, 40, 201, 225
BtsCI	GGATG	2 cut(s)	328, 376
BtsIMutI	CAGTG	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	300
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	1 cut(s)	197
CviJI	RGCY	6 cut(s)	22, 32, 40, 76, 201, 225
CviKI_1	RGCY	6 cut(s)	22, 32, 40, 76, 201, 225
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	3 cut(s)	27, 78, 303
DpnI	GATC	3 cut(s)	195, 243, 378
DpnII	GATC	3 cut(s)	193, 241, 376
EaeI	YGGCCR	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	7
EarI	CTCTTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	220
Eco147I	AGGCCT	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	76
Eco81I	CCTNAGG	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	1 cut(s)	200
FaiI	YATR	7 cut(s)	50, 87, 165, 198, 254, 311, 400
FatI	CATG	1 cut(s)	196
FokI	GGATG	2 cut(s)	335, 383
HaeIII	GGCC	4 cut(s)	32, 40, 201, 225
HapII	CCGG	2 cut(s)	274, 368
HgaI	GACGC	1 cut(s)	161
Hin1II	CATG	1 cut(s)	200
HinfI	GANTC	1 cut(s)	410
HpaII	CCGG	2 cut(s)	274, 368
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	4 cut(s)	28, 234, 241, 289
Hpy188III	TCNNGA	3 cut(s)	206, 368, 380
Hpy8I	GTNNAC	1 cut(s)	424
HpyAV	CCTTC	2 cut(s)	51, 212
HpyCH4III	ACNGT	2 cut(s)	249, 295
HpyCH4V	TGCA	3 cut(s)	98, 173, 416
HpyF3I	CTNAG	3 cut(s)	27, 78, 303
Hsp92II	CATG	1 cut(s)	200
Kpn2I	TCCGGA	1 cut(s)	367
Kzo9I	GATC	3 cut(s)	193, 241, 376
LpnPI	CCDG	2 cut(s)	287, 381
LweI	GCATC	1 cut(s)	160
MaeIII	GTNAC	2 cut(s)	331, 401
MalI	GATC	3 cut(s)	195, 243, 378
MboI	GATC	3 cut(s)	193, 241, 376
MboII	GAAGA	6 cut(s)	24, 67, 158, 372, 386, 419
MflI	RGATCY	2 cut(s)	241, 376
MhlI	GDGCHC	1 cut(s)	304
MlsI	TGGCCA	1 cut(s)	225
MluNI	TGGCCA	1 cut(s)	225
MnlI	CCTC	6 cut(s)	8, 22, 34, 97, 272, 321
Mox20I	TGGCCA	1 cut(s)	225
MroI	TCCGGA	1 cut(s)	367
MscI	TGGCCA	1 cut(s)	225
MseI	TTAA	2 cut(s)	65, 266
MslI	CAYNNNNRTG	1 cut(s)	168
Msp20I	TGGCCA	1 cut(s)	225
MspI	CCGG	2 cut(s)	274, 368
Mva1269I	GAATGC	1 cut(s)	214
NdeII	GATC	3 cut(s)	193, 241, 376
NlaIII	CATG	1 cut(s)	200
NmuCI	GTSAC	1 cut(s)	331
PceI	AGGCCT	1 cut(s)	32
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	410
PstI	CTGCAG	1 cut(s)	418
PsuI	RGATCY	2 cut(s)	241, 376
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	65, 266
Sau3AI	GATC	3 cut(s)	193, 241, 376
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	1 cut(s)	108
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	1 cut(s)	414
SmiMI	CAYNNNNRTG	1 cut(s)	168
SseBI	AGGCCT	1 cut(s)	32
StuI	AGGCCT	1 cut(s)	32
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	2 cut(s)	249, 295
TatI	WGTACW	1 cut(s)	306
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	2 cut(s)	65, 266
Tru9I	TTAA	2 cut(s)	65, 266
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	331
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	3 cut(s)	17, 68, 387
TspRI	CASTG	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.