FvH4_3g43741

ribosomal protein L4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000652
Physical Location & Seq
Reverse (-)
36432948 .. 36434237
1290 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43741.t1

Sequence Viewer

Length: 381 bp
ATGGAAGGTGATAGAACTCCAGCTACTAGCAAAAGAAAATTTACTGAGGACTTGGTATCTTCTGATGATGTAAATGTAAAGAATGGGTATGGGAAAATCCCAAAGTGTAAAAAGGATGAATGTAAAATGGATGAATCTGTTTTGGAGAATGGCTTTGTTCATTTCCAGAAGACTTGCGCATTCATTTGGTTCTGGTTTAGCATCTGCCCATGTTACAAGGGTGGATCATTGATTTGTGCTTGTGGAATGCTTTCGACTTCCGTCTTGACCCAAGAGTCTAGTGGAGGTGCATTTTGCTCCAACTCATTGTCCTTAAAGCCTGAGGGGGCTTCAGATAGAGTGCACTACAGGTATGTGGAACAAGGTCAAAAACGTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L4

Protein Analysis

127

Amino Acids

14.03

Weight (kDa)

8.1

Isoelectric Point (pI)

32.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 274
Acc16I TGCGCA 1 cut(s) 178
AclWI GGATC 1 cut(s) 232
AcsI RAATTY 1 cut(s) 38
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 1 cut(s) 376
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Alw21I GWGCWC 1 cut(s) 345
Alw44I GTGCAC 1 cut(s) 341
AlwI GGATC 1 cut(s) 232
ApaLI GTGCAC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 38
Asp700I GAANNNNTTC 1 cut(s) 250
AspLEI GCGC 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 20
AxyI CCTNAGG 1 cut(s) 321
BaeGI GKGCMC 1 cut(s) 345
BbsI GAAGAC 1 cut(s) 176
Bbv12I GWGCWC 1 cut(s) 345
BfaI CTAG 2 cut(s) 27, 279
BfmI CTRYAG 1 cut(s) 346
BmsI GCATC 1 cut(s) 210
BoxI GACNNNNGTC 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 176
Bse21I CCTNAGG 1 cut(s) 321
BseGI GGATG 2 cut(s) 121, 136
BseMII CTCAG 2 cut(s) 36, 312
BseSI GKGCMC 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 345
BsmI GAATGC 2 cut(s) 179, 252
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 1 cut(s) 224
BspCNI CTCAG 2 cut(s) 37, 313
BspPI GGATC 1 cut(s) 232
BssMI GATC 1 cut(s) 224
BstDEI CTNAG 2 cut(s) 45, 321
BstF5I GGATG 2 cut(s) 121, 136
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 1 cut(s) 227
BstMBI GATC 1 cut(s) 224
BstPAI GACNNNNGTC 1 cut(s) 260
BstSFI CTRYAG 1 cut(s) 346
BstSLI GKGCMC 1 cut(s) 345
BstV2I GAAGAC 1 cut(s) 176
Bsu36I CCTNAGG 1 cut(s) 321
BtsCI GGATG 2 cut(s) 121, 136
CfoI GCGC 1 cut(s) 179
Csp6I GTAC 1 cut(s) 375
CviAII CATG 1 cut(s) 210
CviJI RGCY 4 cut(s) 23, 153, 319, 329
CviKI_1 RGCY 4 cut(s) 23, 153, 319, 329
CviQI GTAC 1 cut(s) 375
DdeI CTNAG 2 cut(s) 45, 321
DpnI GATC 1 cut(s) 226
DpnII GATC 1 cut(s) 224
DrdI GACNNNNNNGTC 1 cut(s) 274
DseDI GACNNNNNNGTC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 315
Eco81I CCTNAGG 1 cut(s) 321
FaeI CATG 1 cut(s) 213
FaiI YATR 4 cut(s) 90, 211, 354, 379
FatI CATG 1 cut(s) 209
FokI GGATG 2 cut(s) 128, 143
FspBI CTAG 2 cut(s) 27, 279
FspI TGCGCA 1 cut(s) 178
GlaI GCGC 1 cut(s) 178
HhaI GCGC 1 cut(s) 179
Hin1II CATG 1 cut(s) 213
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HinfI GANTC 2 cut(s) 134, 275
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 2 cut(s) 64, 334
Hpy188III TCNNGA 2 cut(s) 166, 265
Hpy8I GTNNAC 1 cut(s) 343
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 2 cut(s) 290, 343
HpyF3I CTNAG 2 cut(s) 45, 321
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 1 cut(s) 213
HspAI GCGC 1 cut(s) 177
Kzo9I GATC 1 cut(s) 224
LmnI GCTCC 1 cut(s) 302
LpnPI CCDG 5 cut(s) 33, 178, 179, 333, 334
LweI GCATC 1 cut(s) 210
MaeI CTAG 2 cut(s) 27, 279
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 1 cut(s) 212
MalI GATC 1 cut(s) 226
MboI GATC 1 cut(s) 224
MboII GAAGA 2 cut(s) 51, 181
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 1 cut(s) 38
MlyI GAGTC 1 cut(s) 284
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 3 cut(s) 40, 278, 316
MroXI GAANNNNTTC 1 cut(s) 250
MseI TTAA 1 cut(s) 314
Mva1269I GAATGC 2 cut(s) 179, 252
NdeII GATC 1 cut(s) 224
NlaIII CATG 1 cut(s) 213
NsbI TGCGCA 1 cut(s) 178
PctI GAATGC 2 cut(s) 179, 252
PdmI GAANNNNTTC 1 cut(s) 250
PfeI GAWTC 1 cut(s) 134
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PshAI GACNNNNGTC 1 cut(s) 260
PsrI GAACNNNNNNTAC 2 cut(s) 7, 39
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
SaqAI TTAA 1 cut(s) 314
Sau3AI GATC 1 cut(s) 224
SchI GAGTC 1 cut(s) 284
SduI GDGCHC 1 cut(s) 345
SetI ASST 6 cut(s) 10, 25, 289, 353, 367, 376
SfaNI GCATC 1 cut(s) 210
SfcI CTRYAG 1 cut(s) 346
Sse9I AATT 1 cut(s) 38
SspMI CTAG 2 cut(s) 27, 279
TaiI ACGT 1 cut(s) 376
TaqI TCGA 1 cut(s) 254
TasI AATT 1 cut(s) 38
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TspDTI ATGAA 4 cut(s) 132, 147, 149, 172
TspGWI ACGGA 1 cut(s) 250
VneI GTGCAC 1 cut(s) 341
XapI RAATTY 1 cut(s) 38
XcmI CCANNNNNNNNNTGG 1 cut(s) 278
XmnI GAANNNNTTC 1 cut(s) 250
XspI CTAG 2 cut(s) 27, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.