Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000652

Physical Location & Seq

Genomic Coordinates Forward (+)

14628824 .. 14673808

Gene Structure 44985 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG080300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTTTTTGAAGCTTAACAACGATATCATCTGTAGAATTGCTATGGATAGGAGGTACAGTGATCATGGGGAAGATAATATAAATGATGGTATGAACAATGAGAACGAGGACGACAAGAATTTTGGGGATGTTTTGCTTTCGTTTCAGAAAGAAAATGCAGCTAGGTTCCCAATTGATAGGTTGCCGGTACCTCCACCCGTCCCCGTTCTTTTTCAAAGTTTCGGCCAAGCAAACACACGGTTATACTTAATCACCTTGCCTAATGCTAGTTTATCCCAGGCATTTGATACCCTGCTCCAGAAGCTACAAAGGTCTGTGAGATGTATTGAGATTAACAAAGAATCAAAGCTATCCTTTGAGAAGACGGTTGCCCGCCTGCCAAACTTAGTAGATAGCAGCATCAGCTGGCATCATGCAGACACTTCTAAGTTAAGACATAGGAGAGGAAAATCAGAAACTACTCGTGCTCAGTACATAAACACAAAGGATGTGAGGCTGACAATAAGCACTTGGAATGTTGCTGGAAGAGTTCCAGATGAAAACCTTGATATTGCTGATTGGATTTCTTCAGAAGAGCCATCGGATATCTACATTTTCAAAGAACTTCACTTAAGAATACTGGTCTGGTTTCTGAGCTCTCGATTACCGCCTTTTGCCTACTTGGGAAAAAACATAAGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004439 GO:0004445 GO:0005975 GO:0006066 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0030258 GO:0032501 GO:0032502 GO:0032957 GO:0033993 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042221 GO:0042578 GO:0043647 GO:0044237 GO:0044238 GO:0044255 GO:0044262 GO:0044281 GO:0044282 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046486 GO:0046488 GO:0046838 GO:0046839 GO:0046855 GO:0046856 GO:0048856 GO:0050896 GO:0052745 GO:0052866 GO:0071545 GO:0071704 GO:0090351 GO:0097305 GO:0106019 GO:1901575 GO:1901615 GO:1901616 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

227

Amino Acids

26.19

Weight (kDa)

7.79

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18010 AT4G18010
fragaria_vesca	FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica	MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica	Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata	RLG00000003205
rosa_multiflora	Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa	Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha	Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana	Rw7G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	187
AccB1I	GGYRCC	1 cut(s)	187
AciI	CCGC	2 cut(s)	373, 647
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	118
AcuI	CTGAAG	1 cut(s)	552
AfaI	GTAC	3 cut(s)	56, 189, 473
AflII	CTTAAG	1 cut(s)	610
AgsI	TTSAA	3 cut(s)	10, 215, 598
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	6 cut(s)	13, 161, 304, 349, 405, 636
AluI	AGCT	6 cut(s)	13, 161, 304, 349, 405, 636
Alw21I	GWGCWC	2 cut(s)	469, 638
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	2 cut(s)	158, 396
ApoI	RAATTY	1 cut(s)	118
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
Asp718I	GGTACC	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	638
BauI	CACGAG	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	368
Bbv12I	GWGCWC	2 cut(s)	469, 638
BbvI	GCAGC	2 cut(s)	170, 408
BccI	CCATC	2 cut(s)	80, 586
BciT130I	CCWGG	1 cut(s)	278
BclI	TGATCA	1 cut(s)	61
BfaI	CTAG	2 cut(s)	162, 267
BfmI	CTRYAG	1 cut(s)	31
BfrI	CTTAAG	1 cut(s)	610
BisI	GCNGC	2 cut(s)	159, 397
BlsI	GCNGC	2 cut(s)	160, 398
Bme1390I	CCNGG	1 cut(s)	278
BmiI	GGNNCC	2 cut(s)	167, 189
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	2 cut(s)	408, 418
BpiI	GAAGAC	1 cut(s)	368
BpmI	CTGGAG	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	276
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	624
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	2 cut(s)	133, 493
BseMII	CTCAG	2 cut(s)	482, 623
BseNI	ACTGG	1 cut(s)	624
BseXI	GCAGC	2 cut(s)	170, 408
BshFI	GGCC	1 cut(s)	225
BshNI	GGYRCC	1 cut(s)	187
BsiHKAI	GWGCWC	2 cut(s)	469, 638
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	225
Bsp1286I	GDGCHC	2 cut(s)	469, 638
Bsp143I	GATC	2 cut(s)	61, 677
BspACI	CCGC	2 cut(s)	373, 647
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	2 cut(s)	481, 624
BspLI	GGNNCC	2 cut(s)	167, 189
BspQI	GCTCTTC	1 cut(s)	567
BspT107I	GGYRCC	1 cut(s)	187
BspTI	CTTAAG	1 cut(s)	610
BsrFI	RCCGGY	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	624
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	2 cut(s)	61, 677
BssSI	CACGAG	1 cut(s)	462
Bst2BI	CACGAG	1 cut(s)	462
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	3 cut(s)	59, 240, 367
Bst6I	CTCTTC	2 cut(s)	520, 567
BstAFI	CTTAAG	1 cut(s)	610
BstC8I	GCNNGC	3 cut(s)	373, 377, 407
BstDEI	CTNAG	4 cut(s)	385, 426, 468, 632
BstF5I	GGATG	2 cut(s)	133, 493
BstKTI	GATC	2 cut(s)	64, 680
BstMBI	GATC	2 cut(s)	61, 677
BstMWI	GCNNNNNNNGC	2 cut(s)	301, 402
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstSFI	CTRYAG	1 cut(s)	31
BstV1I	GCAGC	2 cut(s)	170, 408
BstV2I	GAAGAC	1 cut(s)	368
BsuRI	GGCC	1 cut(s)	225
BtsCI	GGATG	2 cut(s)	133, 493
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	3 cut(s)	373, 377, 407
Cfr10I	RCCGGY	1 cut(s)	184
Csp6I	GTAC	3 cut(s)	55, 188, 472
CviAII	CATG	2 cut(s)	65, 413
CviJI	RGCY	9 cut(s)	13, 161, 225, 304, 349, 405, 496, 577, 636
CviKI_1	RGCY	9 cut(s)	13, 161, 225, 304, 349, 405, 496, 577, 636
CviQI	GTAC	3 cut(s)	55, 188, 472
DdeI	CTNAG	4 cut(s)	385, 426, 468, 632
DpnI	GATC	2 cut(s)	63, 679
DpnII	GATC	2 cut(s)	61, 677
EaeI	YGGCCR	1 cut(s)	223
Eam1104I	CTCTTC	2 cut(s)	520, 567
EarI	CTCTTC	2 cut(s)	520, 567
Ecl136II	GAGCTC	1 cut(s)	636
Eco24I	GRGCYC	1 cut(s)	638
Eco32I	GATATC	2 cut(s)	25, 586
Eco53kI	GAGCTC	1 cut(s)	636
Eco57I	CTGAAG	1 cut(s)	552
EcoICRI	GAGCTC	1 cut(s)	636
EcoRII	CCWGG	1 cut(s)	276
EcoRV	GATATC	2 cut(s)	25, 586
EcoT38I	GRGCYC	1 cut(s)	638
FaeI	CATG	2 cut(s)	68, 416
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	2 cut(s)	64, 412
FauI	CCCGC	1 cut(s)	380
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	159, 397
FokI	GGATG	2 cut(s)	140, 500
FriOI	GRGCYC	1 cut(s)	638
Fsp4HI	GCNGC	2 cut(s)	159, 397
FspBI	CTAG	2 cut(s)	162, 267
GluI	GCNGC	2 cut(s)	159, 397
GsuI	CTGGAG	1 cut(s)	281
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	1 cut(s)	185
Hin1II	CATG	2 cut(s)	68, 416
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	1 cut(s)	341
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	1 cut(s)	244
Hpy188I	TCNGA	5 cut(s)	147, 454, 571, 583, 633
Hpy188III	TCNNGA	3 cut(s)	298, 533, 639
HpyCH4III	ACNGT	3 cut(s)	59, 240, 367
HpyCH4V	TGCA	2 cut(s)	158, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	301, 402
HpyF3I	CTNAG	4 cut(s)	385, 426, 468, 632
Hsp92II	CATG	2 cut(s)	68, 416
KpnI	GGTACC	1 cut(s)	191
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	61, 677
LguI	GCTCTTC	1 cut(s)	567
LmnI	GCTCC	1 cut(s)	300
Lsp1109I	GCAGC	2 cut(s)	170, 408
LweI	GCATC	2 cut(s)	408, 418
MaeI	CTAG	2 cut(s)	162, 267
MalI	GATC	2 cut(s)	63, 679
MboI	GATC	2 cut(s)	61, 677
MboII	GAAGA	5 cut(s)	83, 373, 537, 558, 584
MfeI	CAATTG	1 cut(s)	171
MhlI	GDGCHC	2 cut(s)	469, 638
MluCI	AATT	3 cut(s)	36, 118, 171
MnlI	CCTC	5 cut(s)	45, 100, 201, 437, 486
MseI	TTAA	5 cut(s)	15, 248, 333, 431, 611
MspA1I	CMGCKG	1 cut(s)	405
MspCI	CTTAAG	1 cut(s)	610
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	278
MunI	CAATTG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	301, 402
NdeII	GATC	2 cut(s)	61, 677
NlaIII	CATG	2 cut(s)	68, 416
NlaIV	GGNNCC	2 cut(s)	167, 189
PciSI	GCTCTTC	1 cut(s)	567
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	160, 398
Psp124BI	GAGCTC	1 cut(s)	638
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	2 cut(s)	167, 189
PvuII	CAGCTG	1 cut(s)	405
RsaI	GTAC	3 cut(s)	56, 189, 473
RsaNI	GTAC	3 cut(s)	55, 188, 472
SacI	GAGCTC	1 cut(s)	638
SapI	GCTCTTC	1 cut(s)	567
SaqAI	TTAA	5 cut(s)	15, 248, 333, 431, 611
SatI	GCNGC	2 cut(s)	159, 397
Sau3AI	GATC	2 cut(s)	61, 677
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	2 cut(s)	469, 638
SfaNI	GCATC	2 cut(s)	408, 418
SfcI	CTRYAG	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	610
SmoI	CTYRAG	1 cut(s)	610
Sse9I	AATT	3 cut(s)	36, 118, 171
SsiI	CCGC	2 cut(s)	373, 647
SspMI	CTAG	2 cut(s)	162, 267
SstI	GAGCTC	1 cut(s)	638
StyD4I	CCNGG	1 cut(s)	276
TaaI	ACNGT	3 cut(s)	59, 240, 367
TaqI	TCGA	1 cut(s)	640
TasI	AATT	3 cut(s)	36, 118, 171
TatI	WGTACW	1 cut(s)	471
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	5 cut(s)	15, 248, 333, 431, 611
Tru9I	TTAA	5 cut(s)	15, 248, 333, 431, 611
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	2 cut(s)	158, 396
TspDTI	ATGAA	2 cut(s)	107, 552
TspRI	CASTG	1 cut(s)	64
Vha464I	CTTAAG	1 cut(s)	610
XapI	RAATTY	1 cut(s)	118
XspI	CTAG	2 cut(s)	162, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.