Rorug06G0112500
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
15298953 .. 15308277
9325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0112500.1

Sequence Viewer

Length: 1014 bp
ATGGGCTTGGGCCTTTGTCAAGGTTGCTTTGGCAGACTTGACTTTGGGCTCGGGCTGGATTTGGATCCATATTTGGGATCTTGGTCGCTTACAAATCCGGATCTTGGATCCGAGACAGCTGCTCATATTGATATGGTATTGGTTCTGGTTCTTAGGAGTTCGTTTGCTAATTTTCGAGTTTCTAACACCCTCGGTTACTTTCGAACTCTTGGTGGGCGAATCATCTCTCCTAGAGCAATCACTGGGAAGTTGGGAGAAGCACGGGTTGCGCTAAAGCGTGACTTTAGCTTCGCTGGGTTGCGAGGGCGTTACCCTTGCTTCGCTGGTAGTAACAGTGGCGGTTGCGCTCGCAGTCGGCTCCTGGGGAGACTGGGACTGGAAGTACGGTCGCCGGGTTTGTCTGGTGATGCTGACAGTCGGCTCTCGGAGAGACTGGGACTGGCGCACGAAAACAGAAGGAGTGTCCCTGGGTTTGGGATTTCAGTGATTGAAGGTTTGTACTGCTTGCTGAGACTATGTTGGCTGGGCATATGCGTCTTTAGTGTATATGTCATTGATTTAGGAAAATCTCTATCTAGAGTTCCTGTTAACGGACAACAGGCTTCCAGTCAAAGTCAAGATCAGGAAAATCTCGCTGATCAGCAGATACCGTTTATCAGTAGCAGCAAGGTCAATTGTATTGCTCATCTATTCAGTCTGCTTTCAAGTATGAAACAAACTATTGCAAGATACAACAAGTGTGACGAGTCTTCAGAGACCGCTTTGGTAGAATCAATGGCAGAGGGACTAAAACTTGCAAGAGATTTGACAGAAGCATCATTATCAGGTGCAGGATTGTGTACGGTAGCAGCTCTTGCCATGATGTTTTTAACTTGGAATGATAGGGAAAGCTTTTTTGAAGCGGCTGAAAGTGTTCCTGGGGGATCCCACTTCCAATGTCATGACCGAGACAGAAATAGGAAGACTTTGAGAAATACAAAGGATGCTTATGCAGATTGCAGATTAAAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

337

Amino Acids

36.66

Weight (kDa)

8.59

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000652)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 97
AciI CCGC 3 cut(s) 339, 759, 902
AclWI GGATC 8 cut(s) 59, 72, 85, 102, 108, 115, 918, 931
AcuI CTGAAG 1 cut(s) 735
AfaI GTAC 3 cut(s) 384, 500, 841
AfiI CCNNNNNNNGG 4 cut(s) 74, 104, 473, 590
AgsI TTSAA 3 cut(s) 491, 705, 899
AjnI CCWGG 3 cut(s) 360, 466, 916
AluBI AGCT 4 cut(s) 119, 288, 851, 891
AluI AGCT 4 cut(s) 119, 288, 851, 891
Alw26I GTCTC 6 cut(s) 107, 361, 424, 505, 749, 942
AlwI GGATC 8 cut(s) 59, 72, 85, 102, 108, 115, 918, 931
Ama87I CYCGRG 1 cut(s) 50
Aor13HI TCCGGA 1 cut(s) 97
AoxI GGCC 1 cut(s) 10
ApeKI GCWGC 3 cut(s) 119, 663, 848
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
Asp700I GAANNNNTTC 1 cut(s) 912
AspLEI GCGC 3 cut(s) 271, 347, 445
AspS9I GGNCC 1 cut(s) 10
AsuC2I CCSGG 1 cut(s) 393
AsuHPI GGTGA 1 cut(s) 416
AsuII TTCGAA 1 cut(s) 202
AvaI CYCGRG 1 cut(s) 50
BamHI GGATCC 3 cut(s) 64, 107, 923
BanII GRGCYC 1 cut(s) 51
BbsI GAAGAC 2 cut(s) 741, 968
BbvI GCAGC 3 cut(s) 106, 675, 860
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 3 cut(s) 362, 468, 918
BclI TGATCA 1 cut(s) 637
BcnI CCSGG 1 cut(s) 393
BcoDI GTCTC 6 cut(s) 107, 361, 424, 505, 749, 942
BfaI CTAG 2 cut(s) 231, 576
BisI GCNGC 4 cut(s) 120, 664, 849, 903
BlsI GCNGC 4 cut(s) 121, 665, 850, 904
Bme1390I CCNGG 4 cut(s) 362, 393, 468, 918
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 4 cut(s) 66, 109, 359, 925
BmrFI CCNGG 4 cut(s) 362, 393, 468, 918
BmrI ACTGGG 3 cut(s) 252, 380, 443
BmsI GCATC 3 cut(s) 397, 824, 973
BmuI ACTGGG 3 cut(s) 252, 380, 443
BpiI GAAGAC 2 cut(s) 741, 968
Bpu14I TTCGAA 1 cut(s) 202
BpuMI CCSGG 1 cut(s) 393
BsaBI GATNNNNATC 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 749
BsaJI CCNNGG 5 cut(s) 190, 361, 466, 467, 917
BsaWI WCCGGW 1 cut(s) 97
Bsc4I CCNNNNNNNGG 4 cut(s) 74, 104, 473, 590
Bse1I ACTGG 6 cut(s) 247, 375, 381, 438, 444, 606
Bse8I GATNNNNATC 1 cut(s) 63
BseAI TCCGGA 1 cut(s) 97
BseBI CCWGG 3 cut(s) 362, 468, 918
BseDI CCNNGG 5 cut(s) 190, 361, 466, 467, 917
BseGI GGATG 1 cut(s) 988
BseJI GATNNNNATC 1 cut(s) 63
BseLI CCNNNNNNNGG 4 cut(s) 74, 104, 473, 590
BseMII CTCAG 1 cut(s) 500
BseNI ACTGG 6 cut(s) 247, 375, 381, 438, 444, 606
BseXI GCAGC 3 cut(s) 106, 675, 860
BseYI CCCAGC 2 cut(s) 293, 523
BsgI GTGCAG 1 cut(s) 849
Bsh1285I CGRYCG 1 cut(s) 389
BshFI GGCC 1 cut(s) 12
BsiEI CGRYCG 1 cut(s) 389
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 2 cut(s) 98, 392
BslFI GGGAC 4 cut(s) 387, 449, 450, 798
BslI CCNNNNNNNGG 4 cut(s) 74, 104, 473, 590
BsmAI GTCTC 6 cut(s) 107, 361, 424, 505, 749, 942
BsmFI GGGAC 4 cut(s) 387, 449, 450, 798
BsnI GGCC 1 cut(s) 12
Bso31I GGTCTC 1 cut(s) 749
BsoBI CYCGRG 1 cut(s) 50
Bsp119I TTCGAA 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 51
Bsp13I TCCGGA 1 cut(s) 97
Bsp143I GATC 7 cut(s) 64, 77, 100, 107, 619, 637, 923
BspACI CCGC 3 cut(s) 339, 759, 902
BspANI GGCC 1 cut(s) 12
BspCNI CTCAG 1 cut(s) 501
BspEI TCCGGA 1 cut(s) 97
BspHI TCATGA 1 cut(s) 940
BspLI GGNNCC 4 cut(s) 66, 109, 359, 925
BspPI GGATC 8 cut(s) 59, 72, 85, 102, 108, 115, 918, 931
BspT104I TTCGAA 1 cut(s) 202
BspTNI GGTCTC 1 cut(s) 749
BsrI ACTGG 6 cut(s) 247, 375, 381, 438, 444, 606
BssECI CCNNGG 5 cut(s) 190, 361, 466, 467, 917
BssMI GATC 7 cut(s) 64, 77, 100, 107, 619, 637, 923
Bst2UI CCWGG 3 cut(s) 362, 468, 918
Bst4CI ACNGT 5 cut(s) 335, 387, 416, 651, 844
BstAPI GCANNNNNTGC 2 cut(s) 266, 854
BstBI TTCGAA 1 cut(s) 202
BstC8I GCNNGC 2 cut(s) 349, 506
BstDEI CTNAG 2 cut(s) 152, 509
BstF5I GGATG 1 cut(s) 988
BstHHI GCGC 3 cut(s) 271, 347, 445
BstKTI GATC 7 cut(s) 67, 80, 103, 110, 622, 640, 926
BstMAI GTCTC 6 cut(s) 107, 361, 424, 505, 749, 942
BstMBI GATC 7 cut(s) 64, 77, 100, 107, 619, 637, 923
BstMCI CGRYCG 1 cut(s) 389
BstMWI GCNNNNNNNGC 2 cut(s) 266, 854
BstNI CCWGG 3 cut(s) 362, 468, 918
BstSCI CCNGG 4 cut(s) 360, 391, 466, 916
BstV1I GCAGC 3 cut(s) 106, 675, 860
BstV2I GAAGAC 2 cut(s) 741, 968
BstX2I RGATCY 5 cut(s) 64, 77, 100, 107, 923
BstYI RGATCY 5 cut(s) 64, 77, 100, 107, 923
BsuRI GGCC 1 cut(s) 12
BtsCI GGATG 1 cut(s) 988
BtsIMutI CAGTG 3 cut(s) 240, 340, 489
Cac8I GCNNGC 2 cut(s) 349, 506
CciI TCATGA 1 cut(s) 940
CfoI GCGC 3 cut(s) 271, 347, 445
Cfr13I GGNCC 1 cut(s) 10
CseI GACGC 1 cut(s) 523
Csp6I GTAC 3 cut(s) 383, 499, 840
CviAII CATG 2 cut(s) 859, 941
CviQI GTAC 3 cut(s) 383, 499, 840
DdeI CTNAG 2 cut(s) 152, 509
DpnI GATC 7 cut(s) 66, 79, 102, 109, 621, 639, 925
DpnII GATC 7 cut(s) 64, 77, 100, 107, 619, 637, 923
Eco24I GRGCYC 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 749
Eco57I CTGAAG 1 cut(s) 735
Eco88I CYCGRG 1 cut(s) 50
EcoRII CCWGG 3 cut(s) 360, 466, 916
EcoT38I GRGCYC 1 cut(s) 51
FaeI CATG 2 cut(s) 862, 944
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FaqI GGGAC 4 cut(s) 387, 449, 450, 798
FatI CATG 2 cut(s) 858, 940
FauNDI CATATG 1 cut(s) 530
FbaI TGATCA 1 cut(s) 637
Fnu4HI GCNGC 4 cut(s) 120, 664, 849, 903
FokI GGATG 1 cut(s) 995
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 4 cut(s) 120, 664, 849, 903
FspBI CTAG 2 cut(s) 231, 576
GlaI GCGC 3 cut(s) 270, 346, 444
GluI GCNGC 4 cut(s) 120, 664, 849, 903
GsaI CCCAGC 2 cut(s) 297, 527
HaeIII GGCC 1 cut(s) 12
HapII CCGG 2 cut(s) 98, 392
HgaI GACGC 1 cut(s) 523
HhaI GCGC 3 cut(s) 271, 347, 445
Hin1II CATG 2 cut(s) 862, 944
Hin6I GCGC 3 cut(s) 269, 345, 443
HinP1I GCGC 3 cut(s) 269, 345, 443
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HindIII AAGCTT 1 cut(s) 889
HinfI GANTC 3 cut(s) 219, 746, 770
HpaI GTTAAC 1 cut(s) 589
HpaII CCGG 2 cut(s) 98, 392
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 2 cut(s) 589, 840
Hpy188I TCNGA 3 cut(s) 112, 427, 754
Hpy188III TCNNGA 5 cut(s) 98, 576, 617, 623, 941
Hpy8I GTNNAC 2 cut(s) 589, 840
HpyAV CCTTC 2 cut(s) 450, 485
HpyCH4III ACNGT 5 cut(s) 335, 387, 416, 651, 844
HpyCH4V TGCA 5 cut(s) 725, 797, 830, 992, 999
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 854
HpyF3I CTNAG 2 cut(s) 152, 509
Hsp92II CATG 2 cut(s) 862, 944
HspAI GCGC 3 cut(s) 269, 345, 443
Kpn2I TCCGGA 1 cut(s) 97
Ksp22I TGATCA 1 cut(s) 637
KspAI GTTAAC 1 cut(s) 589
Kzo9I GATC 7 cut(s) 64, 77, 100, 107, 619, 637, 923
LmnI GCTCC 1 cut(s) 363
Lsp1109I GCAGC 3 cut(s) 106, 675, 860
LweI GCATC 3 cut(s) 397, 824, 973
MaeI CTAG 2 cut(s) 231, 576
MaeIII GTNAC 5 cut(s) 194, 278, 308, 329, 740
MalI GATC 7 cut(s) 66, 79, 102, 109, 621, 639, 925
MboI GATC 7 cut(s) 64, 77, 100, 107, 619, 637, 923
MboII GAAGA 2 cut(s) 741, 973
MfeI CAATTG 1 cut(s) 673
MflI RGATCY 5 cut(s) 64, 77, 100, 107, 923
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 2 cut(s) 169, 673
MlyI GAGTC 1 cut(s) 755
MnlI CCTC 3 cut(s) 200, 296, 775
MroI TCCGGA 1 cut(s) 97
MroXI GAANNNNTTC 1 cut(s) 912
MseI TTAA 3 cut(s) 588, 869, 1004
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 2 cut(s) 98, 392
MspR9I CCNGG 4 cut(s) 362, 393, 468, 918
MunI CAATTG 1 cut(s) 673
MvaI CCWGG 3 cut(s) 362, 468, 918
MwoI GCNNNNNNNGC 2 cut(s) 266, 854
NciI CCSGG 1 cut(s) 393
NdeI CATATG 1 cut(s) 530
NdeII GATC 7 cut(s) 64, 77, 100, 107, 619, 637, 923
NlaIII CATG 2 cut(s) 862, 944
NlaIV GGNNCC 4 cut(s) 66, 109, 359, 925
NmuCI GTSAC 2 cut(s) 278, 740
NspV TTCGAA 1 cut(s) 202
PagI TCATGA 1 cut(s) 940
PasI CCCWGGG 1 cut(s) 467
PdmI GAANNNNTTC 1 cut(s) 912
PfeI GAWTC 2 cut(s) 219, 770
PkrI GCNGC 4 cut(s) 121, 665, 850, 904
PleI GAGTC 1 cut(s) 754
PpsI GAGTC 1 cut(s) 754
Psp6I CCWGG 3 cut(s) 360, 466, 916
PspFI CCCAGC 2 cut(s) 293, 523
PspGI CCWGG 3 cut(s) 360, 466, 916
PspN4I GGNNCC 4 cut(s) 66, 109, 359, 925
PspPI GGNCC 1 cut(s) 10
PsuI RGATCY 5 cut(s) 64, 77, 100, 107, 923
PvuII CAGCTG 1 cut(s) 119
RsaI GTAC 3 cut(s) 384, 500, 841
RsaNI GTAC 3 cut(s) 383, 499, 840
SaqAI TTAA 3 cut(s) 588, 869, 1004
SatI GCNGC 4 cut(s) 120, 664, 849, 903
Sau3AI GATC 7 cut(s) 64, 77, 100, 107, 619, 637, 923
Sau96I GGNCC 1 cut(s) 10
SchI GAGTC 1 cut(s) 755
ScrFI CCNGG 4 cut(s) 362, 393, 468, 918
SduI GDGCHC 1 cut(s) 51
SetI ASST 8 cut(s) 25, 121, 290, 496, 672, 829, 853, 893
SfaNI GCATC 3 cut(s) 397, 824, 973
SfuI TTCGAA 1 cut(s) 202
Sse9I AATT 2 cut(s) 169, 673
SsiI CCGC 3 cut(s) 339, 759, 902
SspMI CTAG 2 cut(s) 231, 576
StyD4I CCNGG 4 cut(s) 360, 391, 466, 916
TaaI ACNGT 5 cut(s) 335, 387, 416, 651, 844
TaqI TCGA 2 cut(s) 175, 202
TaqII GACCGA 1 cut(s) 960
TasI AATT 2 cut(s) 169, 673
TatI WGTACW 1 cut(s) 498
TauI GCSGC 1 cut(s) 905
TfiI GAWTC 2 cut(s) 219, 770
Tru1I TTAA 3 cut(s) 588, 869, 1004
Tru9I TTAA 3 cut(s) 588, 869, 1004
TscAI CASTG 3 cut(s) 247, 340, 489
TseFI GTSAC 2 cut(s) 278, 740
TseI GCWGC 3 cut(s) 119, 663, 848
Tsp45I GTSAC 2 cut(s) 278, 740
TspDTI ATGAA 1 cut(s) 725
TspGWI ACGGA 1 cut(s) 606
TspRI CASTG 3 cut(s) 247, 340, 489
XbaI TCTAGA 1 cut(s) 575
XmnI GAANNNNTTC 1 cut(s) 912
XspI CTAG 2 cut(s) 231, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.