Rh7DG333900
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
41187624 .. 41189960
2337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG333900.1

Sequence Viewer

Length: 657 bp
ATGGGATCTGGTGCTGGAAGTTTCCTCAAAGTTCTCCTTAAAAACTTTGATGTTCTTGCTGGGCCTGTGGTGTGCCTCAATTCGGGTTATAGACCAAATCACCAACTGATGATCGCCAATGGCTTACATCATAATACATACCTGATTGGAGATGACGAGCACTGCTACAGTGACAATCATGTGTCAAACATTGAAGGTGGTTGCTATGCTAAGTGCATTGATTTGTCAAAAGACAAGCAACCAGATATTTGGAATTCTATCAAATTTGAGACTGATCCGCCTTCTTTTGGCTATCAGTTAAGACATAGGAGAGGAAAATCAGAAACTACTCGTGCTCAGTACATAAACACAAAGGCTGTGAGGCTGACAATAAGCACTTGGAATGTTGCTGGAAGAGTTCCGGATGAAAACCTTGATATTGATGATTGGATTTCTTCAGAAGAGCCATCGGATATCTATATGTTCAATGGAATGGCAGAGCTTTCGATGACTATATCCAAGCTTCCAGTGTTTTATAAGCACAGAAAGCTGCTCTTCTTTCCACCATGGGCATATGCACTTCCGGCATGGCTCCTCAAGATCCCTCTCACTGAAGTTGGTGTTTGGGTATTTATCACCTATTATGTCATTGGCTTTGATCCAAATGTTGGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

218

Amino Acids

24.77

Weight (kDa)

6.37

Isoelectric Point (pI)

35.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEPCK_ATP PF01293 44 - 91 5e-17 Phosphoenolpyruvate carboxykinase
ABC2_membrane PF01061 154 - 217 1.8e-08 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000652)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 516
AccB7I CCANNNNNTGG 1 cut(s) 647
AccIII TCCGGA 1 cut(s) 400
AciI CCGC 1 cut(s) 278
AclWI GGATC 4 cut(s) 13, 269, 574, 632
AcsI RAATTY 2 cut(s) 253, 263
AcuI CTGAAG 2 cut(s) 420, 612
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 3 cut(s) 82, 287, 647
AgsI TTSAA 2 cut(s) 194, 466
AluBI AGCT 3 cut(s) 481, 502, 529
AluI AGCT 3 cut(s) 481, 502, 529
Alw21I GWGCWC 2 cut(s) 162, 337
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 4 cut(s) 13, 269, 574, 632
Aor13HI TCCGGA 1 cut(s) 400
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 529
ApoI RAATTY 2 cut(s) 253, 263
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 2 cut(s) 92, 607
BauI CACGAG 1 cut(s) 330
Bbv12I GWGCWC 2 cut(s) 162, 337
BbvI GCAGC 1 cut(s) 516
BccI CCATC 1 cut(s) 454
BcgI CGANNNNNNTGC 2 cut(s) 465, 499
BcoDI GTCTC 1 cut(s) 263
BfmI CTRYAG 1 cut(s) 166
BisI GCNGC 1 cut(s) 530
BlsI GCNGC 1 cut(s) 531
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 560
BsaJI CCNNGG 1 cut(s) 545
BsaWI WCCGGW 1 cut(s) 400
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 287, 647
Bse1I ACTGG 1 cut(s) 506
BseAI TCCGGA 1 cut(s) 400
BseDI CCNNGG 1 cut(s) 545
BseGI GGATG 1 cut(s) 409
BseLI CCNNNNNNNGG 3 cut(s) 82, 287, 647
BseMII CTCAG 1 cut(s) 350
BseNI ACTGG 1 cut(s) 506
BseRI GAGGAG 1 cut(s) 563
BseXI GCAGC 1 cut(s) 516
BseYI CCCAGC 1 cut(s) 59
BshFI GGCC 1 cut(s) 64
BsiHKAI GWGCWC 2 cut(s) 162, 337
BsiSI CCGG 2 cut(s) 401, 563
BslI CCNNNNNNNGG 3 cut(s) 82, 287, 647
BsmAI GTCTC 1 cut(s) 263
BsnI GGCC 1 cut(s) 64
Bsp1286I GDGCHC 2 cut(s) 162, 337
Bsp13I TCCGGA 1 cut(s) 400
Bsp143I GATC 5 cut(s) 5, 111, 274, 579, 637
Bsp19I CCATGG 1 cut(s) 545
BspACI CCGC 1 cut(s) 278
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 349
BspEI TCCGGA 1 cut(s) 400
BspLI GGNNCC 1 cut(s) 572
BspPI GGATC 4 cut(s) 13, 269, 574, 632
BspQI GCTCTTC 2 cut(s) 435, 539
BsrI ACTGG 1 cut(s) 506
BssECI CCNNGG 1 cut(s) 545
BssMI GATC 5 cut(s) 5, 111, 274, 579, 637
BssSI CACGAG 1 cut(s) 330
BssT1I CCWWGG 1 cut(s) 545
Bst2BI CACGAG 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 170
Bst6I CTCTTC 3 cut(s) 388, 435, 539
BstDEI CTNAG 2 cut(s) 210, 336
BstDSI CCRYGG 1 cut(s) 545
BstF5I GGATG 1 cut(s) 409
BstKTI GATC 5 cut(s) 8, 114, 277, 582, 640
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 5 cut(s) 5, 111, 274, 579, 637
BstMWI GCNNNNNNNGC 2 cut(s) 526, 563
BstSFI CTRYAG 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 516
BstX2I RGATCY 2 cut(s) 5, 579
BstXI CCANNNNNNTGG 1 cut(s) 249
BstYI RGATCY 2 cut(s) 5, 579
BsuRI GGCC 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 545
BtsCI GGATG 1 cut(s) 409
BtsI GCAGTG 1 cut(s) 160
BtsIMutI CAGTG 4 cut(s) 160, 175, 513, 588
Cfr13I GGNCC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 340
CviAII CATG 3 cut(s) 179, 546, 567
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 2 cut(s) 210, 336
DpnI GATC 5 cut(s) 7, 113, 276, 581, 639
DpnII GATC 5 cut(s) 5, 111, 274, 579, 637
Eam1104I CTCTTC 3 cut(s) 388, 435, 539
EarI CTCTTC 3 cut(s) 388, 435, 539
EciI GGCGGA 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 545
Eco32I GATATC 1 cut(s) 454
Eco57I CTGAAG 2 cut(s) 420, 612
EcoRI GAATTC 1 cut(s) 253
EcoRV GATATC 1 cut(s) 454
EcoT14I CCWWGG 1 cut(s) 545
ErhI CCWWGG 1 cut(s) 545
FaeI CATG 3 cut(s) 182, 549, 570
FalI AAGNNNNNCTT 4 cut(s) 21, 53, 518, 550
FatI CATG 3 cut(s) 178, 545, 566
FauNDI CATATG 1 cut(s) 553
Fnu4HI GCNGC 1 cut(s) 530
FokI GGATG 1 cut(s) 416
Fsp4HI GCNGC 1 cut(s) 530
GluI GCNGC 1 cut(s) 530
GsaI CCCAGC 1 cut(s) 63
HaeIII GGCC 1 cut(s) 64
HapII CCGG 2 cut(s) 401, 563
Hin1II CATG 3 cut(s) 182, 549, 570
HindIII AAGCTT 1 cut(s) 500
HpaII CCGG 2 cut(s) 401, 563
HphI GGTGA 2 cut(s) 92, 607
Hpy188I TCNGA 3 cut(s) 322, 439, 451
Hpy188III TCNNGA 2 cut(s) 401, 577
HpyAV CCTTC 3 cut(s) 188, 291, 645
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4V TGCA 2 cut(s) 216, 557
HpyF10VI GCNNNNNNNGC 2 cut(s) 526, 563
HpyF3I CTNAG 2 cut(s) 210, 336
Hsp92II CATG 3 cut(s) 182, 549, 570
Kpn2I TCCGGA 1 cut(s) 400
Kzo9I GATC 5 cut(s) 5, 111, 274, 579, 637
LguI GCTCTTC 2 cut(s) 435, 539
LmnI GCTCC 1 cut(s) 576
LpnPI CCDG 8 cut(s) 45, 78, 155, 255, 375, 414, 519, 576
Lsp1109I GCAGC 1 cut(s) 516
MaeIII GTNAC 1 cut(s) 170
MalI GATC 5 cut(s) 7, 113, 276, 581, 639
MboI GATC 5 cut(s) 5, 111, 274, 579, 637
MboII GAAGA 4 cut(s) 405, 426, 452, 526
MflI RGATCY 2 cut(s) 5, 579
MhlI GDGCHC 2 cut(s) 162, 337
MluCI AATT 3 cut(s) 79, 253, 263
MmeI TCCRAC 1 cut(s) 628
MnlI CCTC 6 cut(s) 35, 86, 305, 354, 584, 594
MroI TCCGGA 1 cut(s) 400
MseI TTAA 2 cut(s) 39, 299
MspI CCGG 2 cut(s) 401, 563
MwoI GCNNNNNNNGC 2 cut(s) 526, 563
NcoI CCATGG 1 cut(s) 545
NdeI CATATG 1 cut(s) 553
NdeII GATC 5 cut(s) 5, 111, 274, 579, 637
NlaIII CATG 3 cut(s) 182, 549, 570
NlaIV GGNNCC 1 cut(s) 572
NmuCI GTSAC 1 cut(s) 170
PciSI GCTCTTC 2 cut(s) 435, 539
PflMI CCANNNNNTGG 1 cut(s) 647
PkrI GCNGC 1 cut(s) 531
PsiI TTATAA 1 cut(s) 516
PspFI CCCAGC 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 572
PspPI GGNCC 1 cut(s) 62
PsuI RGATCY 2 cut(s) 5, 579
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
SapI GCTCTTC 2 cut(s) 435, 539
SaqAI TTAA 2 cut(s) 39, 299
SatI GCNGC 1 cut(s) 530
Sau3AI GATC 5 cut(s) 5, 111, 274, 579, 637
Sau96I GGNCC 1 cut(s) 62
SduI GDGCHC 2 cut(s) 162, 337
SetI ASST 8 cut(s) 144, 199, 414, 483, 504, 531, 620, 656
SfcI CTRYAG 1 cut(s) 166
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
Sse9I AATT 3 cut(s) 79, 253, 263
SsiI CCGC 1 cut(s) 278
StyI CCWWGG 1 cut(s) 545
TaaI ACNGT 1 cut(s) 170
TaqI TCGA 1 cut(s) 485
TasI AATT 3 cut(s) 79, 253, 263
TatI WGTACW 1 cut(s) 339
Tru1I TTAA 2 cut(s) 39, 299
Tru9I TTAA 2 cut(s) 39, 299
TscAI CASTG 4 cut(s) 167, 175, 513, 595
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 1 cut(s) 529
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 420
TspRI CASTG 4 cut(s) 167, 175, 513, 595
Van91I CCANNNNNTGG 1 cut(s) 647
XapI RAATTY 2 cut(s) 253, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.