Rh1CG073400
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000652
Physical Location & Seq
Forward (+)
15164040 .. 15214868
50829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG073400.1

Sequence Viewer

Length: 660 bp
ATGCAGCTAGGTTCCCAATTGATAGGGTATCATAAAGGCAATCATCCTGGGAATAGATGGAGACATCTTTTAGGAGAAAGAGACTTTTGGGAACATGTGGGAGGAATTGATACTTCCTTGGCTCCATCTAGTTTCGGCCAAGCAAACACACGGGCATTTGATACCCTGCTCCAGAAGCTACAAAGGTATGTCCCTCTTGGAGCATCTGTTGCTGATTTGTATGCAGGAGCAGGTGTTATCAGATTATCATTGGCTGCTACAAGAAAATGCAGGTCTGTGAGATGTATTGAGATTAACAAAGAATCAAAGCTATCCTTTGAGAAGACGGTTGCCCGCCTGCCAAACATAGTAGATAGCAGCATCAGCTGGCATCATGCAGACACTTCTAAGGTTTTCGCACGATTTACACCTACAATGCTGATGGATTCTTGGACTAAGAATGAGATGGACCTGGCTTTCTTGGTATATAAATATGCAGTGCGCCTTGGCTTGTCTTCAGAGAGCTTTTGTGACCTTATCACTGATATGGGTTCTCATGGGTGTACAGTTCAGTCGTCAGAGTACAACCCAATCTACTTGCAGCGGAGAGTTGACAACTTTATTAATGGTCTGGAAGACATTTTGAGTAATCAGCAAAAGAAGAAGCGGGAAAAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cons_hypoth95 MTS

Protein Analysis

219

Amino Acids

24.75

Weight (kDa)

9.17

Isoelectric Point (pI)

41.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 221
Acc36I ACCTGC 2 cut(s) 221, 261
AciI CCGC 3 cut(s) 334, 583, 646
AcoI YGGCCR 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 480
AfaI GTAC 2 cut(s) 544, 563
AflIII ACRYGT 1 cut(s) 94
AjnI CCWGG 2 cut(s) 46, 450
AluBI AGCT 5 cut(s) 7, 178, 310, 366, 504
AluI AGCT 5 cut(s) 7, 178, 310, 366, 504
Alw26I GTCTC 2 cut(s) 55, 75
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 4 cut(s) 4, 254, 357, 580
AseI ATTAAT 1 cut(s) 603
AspLEI GCGC 1 cut(s) 483
AspS9I GGNCC 1 cut(s) 448
AvaII GGWCC 1 cut(s) 448
BbsI GAAGAC 3 cut(s) 329, 486, 621
BbvI GCAGC 4 cut(s) 16, 241, 369, 592
BccI CCATC 4 cut(s) 51, 133, 415, 439
BciT130I CCWGG 2 cut(s) 48, 452
BcoDI GTCTC 2 cut(s) 55, 75
BfaI CTAG 2 cut(s) 8, 129
BfuAI ACCTGC 2 cut(s) 221, 261
BisI GCNGC 4 cut(s) 5, 255, 358, 581
BlsI GCNGC 4 cut(s) 6, 256, 359, 582
Bme1390I CCNGG 2 cut(s) 48, 452
Bme18I GGWCC 1 cut(s) 448
BmgT120I GGNCC 1 cut(s) 448
BmiI GGNNCC 2 cut(s) 13, 123
BmrFI CCNGG 2 cut(s) 48, 452
BmsI GCATC 3 cut(s) 212, 369, 379
BpiI GAAGAC 3 cut(s) 329, 486, 621
BpmI CTGGAG 1 cut(s) 155
BsaJI CCNNGG 3 cut(s) 47, 117, 484
BsaXI ACNNNNNCTCC 4 cut(s) 192, 219, 222, 249
BseBI CCWGG 2 cut(s) 48, 452
BseDI CCNNGG 3 cut(s) 47, 117, 484
BseGI GGATG 1 cut(s) 43
BseXI GCAGC 4 cut(s) 16, 241, 369, 592
BshFI GGCC 1 cut(s) 138
BslFI GGGAC 1 cut(s) 176
BsmAI GTCTC 2 cut(s) 55, 75
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 1 cut(s) 138
Bsp1407I TGTACA 1 cut(s) 542
BspACI CCGC 3 cut(s) 334, 583, 646
BspANI GGCC 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 13, 123
BspMI ACCTGC 2 cut(s) 221, 261
BsrGI TGTACA 1 cut(s) 542
BssECI CCNNGG 3 cut(s) 47, 117, 484
BssT1I CCWWGG 2 cut(s) 117, 484
Bst2UI CCWGG 2 cut(s) 48, 452
Bst4CI ACNGT 2 cut(s) 328, 547
BstAPI GCANNNNNTGC 1 cut(s) 209
BstAUI TGTACA 1 cut(s) 542
BstC8I GCNNGC 3 cut(s) 334, 338, 368
BstDEI CTNAG 2 cut(s) 387, 435
BstF5I GGATG 1 cut(s) 43
BstHHI GCGC 1 cut(s) 483
BstMAI GTCTC 2 cut(s) 55, 75
BstMWI GCNNNNNNNGC 3 cut(s) 175, 209, 363
BstNI CCWGG 2 cut(s) 48, 452
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 46, 450
BstV1I GCAGC 4 cut(s) 16, 241, 369, 592
BstV2I GAAGAC 3 cut(s) 329, 486, 621
BsuRI GGCC 1 cut(s) 138
BtsCI GGATG 1 cut(s) 43
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 2 cut(s) 483, 519
BveI ACCTGC 2 cut(s) 221, 261
Cac8I GCNNGC 3 cut(s) 334, 338, 368
CfoI GCGC 1 cut(s) 483
Cfr13I GGNCC 1 cut(s) 448
Csp6I GTAC 2 cut(s) 543, 562
CviAII CATG 3 cut(s) 95, 374, 536
CviQI GTAC 2 cut(s) 543, 562
DdeI CTNAG 2 cut(s) 387, 435
EaeI YGGCCR 1 cut(s) 136
Eco130I CCWWGG 2 cut(s) 117, 484
Eco47I GGWCC 1 cut(s) 448
Eco57I CTGAAG 1 cut(s) 480
EcoRII CCWGG 2 cut(s) 46, 450
EcoT14I CCWWGG 2 cut(s) 117, 484
ErhI CCWWGG 2 cut(s) 117, 484
FaeI CATG 3 cut(s) 98, 377, 539
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 1 cut(s) 176
FatI CATG 3 cut(s) 94, 373, 535
FauI CCCGC 2 cut(s) 341, 639
Fnu4HI GCNGC 4 cut(s) 5, 255, 358, 581
FokI GGATG 1 cut(s) 30
Fsp4HI GCNGC 4 cut(s) 5, 255, 358, 581
FspBI CTAG 2 cut(s) 8, 129
GlaI GCGC 1 cut(s) 482
GluI GCNGC 4 cut(s) 5, 255, 358, 581
GsuI CTGGAG 1 cut(s) 155
HaeIII GGCC 1 cut(s) 138
HhaI GCGC 1 cut(s) 483
Hin1II CATG 3 cut(s) 98, 377, 539
Hin6I GCGC 1 cut(s) 481
HinP1I GCGC 1 cut(s) 481
HincII GTYRAC 1 cut(s) 592
HindII GTYRAC 1 cut(s) 592
HinfI GANTC 2 cut(s) 302, 425
Hpy166II GTNNAC 2 cut(s) 543, 592
Hpy188I TCNGA 3 cut(s) 242, 499, 559
Hpy188III TCNNGA 2 cut(s) 172, 611
Hpy8I GTNNAC 2 cut(s) 543, 592
HpyCH4III ACNGT 2 cut(s) 328, 547
HpyCH4V TGCA 6 cut(s) 4, 224, 270, 377, 476, 580
HpyF10VI GCNNNNNNNGC 3 cut(s) 175, 209, 363
HpyF3I CTNAG 2 cut(s) 387, 435
Hsp92II CATG 3 cut(s) 98, 377, 539
HspAI GCGC 1 cut(s) 481
LmnI GCTCC 4 cut(s) 127, 174, 200, 227
Lsp1109I GCAGC 4 cut(s) 16, 241, 369, 592
LweI GCATC 3 cut(s) 212, 369, 379
MaeI CTAG 2 cut(s) 8, 129
MaeIII GTNAC 1 cut(s) 509
MboII GAAGA 4 cut(s) 334, 486, 626, 652
MfeI CAATTG 1 cut(s) 17
MluCI AATT 2 cut(s) 17, 105
MnlI CCTC 2 cut(s) 95, 204
MseI TTAA 2 cut(s) 294, 603
MslI CAYNNNNRTG 1 cut(s) 524
MspA1I CMGCKG 2 cut(s) 366, 583
MspR9I CCNGG 2 cut(s) 48, 452
MunI CAATTG 1 cut(s) 17
MvaI CCWGG 2 cut(s) 48, 452
MwoI GCNNNNNNNGC 3 cut(s) 175, 209, 363
NlaIII CATG 3 cut(s) 98, 377, 539
NlaIV GGNNCC 2 cut(s) 13, 123
NmuCI GTSAC 1 cut(s) 509
NspI RCATGY 1 cut(s) 98
PaqCI CACCTGC 1 cut(s) 221
PciI ACATGT 1 cut(s) 94
PfeI GAWTC 2 cut(s) 302, 425
PkrI GCNGC 4 cut(s) 6, 256, 359, 582
PscI ACATGT 1 cut(s) 94
PshBI ATTAAT 1 cut(s) 603
Psp6I CCWGG 2 cut(s) 46, 450
PspGI CCWGG 2 cut(s) 46, 450
PspN4I GGNNCC 2 cut(s) 13, 123
PspPI GGNCC 1 cut(s) 448
PvuII CAGCTG 1 cut(s) 366
RsaI GTAC 2 cut(s) 544, 563
RsaNI GTAC 2 cut(s) 543, 562
RseI CAYNNNNRTG 1 cut(s) 524
SaqAI TTAA 2 cut(s) 294, 603
SatI GCNGC 4 cut(s) 5, 255, 358, 581
Sau96I GGNCC 1 cut(s) 448
ScrFI CCNGG 2 cut(s) 48, 452
SfaNI GCATC 3 cut(s) 212, 369, 379
SinI GGWCC 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 524
Sse9I AATT 2 cut(s) 17, 105
SsiI CCGC 3 cut(s) 334, 583, 646
SspMI CTAG 2 cut(s) 8, 129
StyD4I CCNGG 2 cut(s) 46, 450
StyI CCWWGG 2 cut(s) 117, 484
TaaI ACNGT 2 cut(s) 328, 547
TasI AATT 2 cut(s) 17, 105
TatI WGTACW 2 cut(s) 542, 561
TfiI GAWTC 2 cut(s) 302, 425
Tru1I TTAA 2 cut(s) 294, 603
Tru9I TTAA 2 cut(s) 294, 603
TscAI CASTG 2 cut(s) 483, 526
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 4 cut(s) 4, 254, 357, 580
Tsp45I GTSAC 1 cut(s) 509
TspRI CASTG 2 cut(s) 483, 526
VpaK11BI GGWCC 1 cut(s) 448
VspI ATTAAT 1 cut(s) 603
XceI RCATGY 1 cut(s) 98
XspI CTAG 2 cut(s) 8, 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.