RchiOBHm_Chr3g0482901
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000652
Physical Location & Seq
Forward (+)
28984861 .. 28985465
605 bp
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UTR
Exon/CDS
Intron
PRQ44771

Sequence Viewer

Length: 153 bp
ATGATTTTACTTGCATTGTTAGTTCAAAGGTATGTCCCTCTTGGAGCATCTGTTGCTGATTTGTATGCAGGAGCAAGTGTTATCAGATTATCATTGGCTGCTACAAGAAAATGCAGGCAAGAATTTAAGATTTCTGTAAATGCACAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cons_hypoth95 MTS

Protein Analysis

50

Amino Acids

5.48

Weight (kDa)

9.86

Isoelectric Point (pI)

17.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 122
AgsI TTSAA 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 122
BbvI GCAGC 1 cut(s) 85
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
BmsI GCATC 1 cut(s) 56
BsaXI ACNNNNNCTCC 4 cut(s) 36, 63, 66, 93
BseXI GCAGC 1 cut(s) 85
BslFI GGGAC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 147
BstAPI GCANNNNNTGC 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 116
CviJI RGCY 1 cut(s) 98
CviKI_1 RGCY 1 cut(s) 98
FaiI YATR 2 cut(s) 33, 66
FaqI GGGAC 1 cut(s) 20
Fnu4HI GCNGC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 99
FspEI CC 7 cut(s) 13, 27, 50, 51, 54, 80, 100
GluI GCNGC 1 cut(s) 99
Hpy188I TCNGA 1 cut(s) 86
HpyCH4III ACNGT 1 cut(s) 147
HpyCH4V TGCA 4 cut(s) 14, 68, 114, 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
LmnI GCTCC 2 cut(s) 44, 71
LpnPI CCDG 2 cut(s) 54, 100
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 1 cut(s) 56
MluCI AATT 1 cut(s) 122
MnlI CCTC 1 cut(s) 48
MseI TTAA 2 cut(s) 126, 151
MwoI GCNNNNNNNGC 1 cut(s) 53
PkrI GCNGC 1 cut(s) 100
SaqAI TTAA 2 cut(s) 126, 151
SatI GCNGC 1 cut(s) 99
SetI ASST 1 cut(s) 32
SfaNI GCATC 1 cut(s) 56
SgeI CNNG 7 cut(s) 23, 53, 81, 87, 117, 127, 131
Sse9I AATT 1 cut(s) 122
TaaI ACNGT 1 cut(s) 147
TasI AATT 1 cut(s) 122
Tru1I TTAA 2 cut(s) 126, 151
Tru9I TTAA 2 cut(s) 126, 151
TseI GCWGC 1 cut(s) 98
XapI RAATTY 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.