Rh6AG492200

ribosomal protein L4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000652
Physical Location & Seq
Reverse (-)
66864148 .. 66867564
3417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG492200.1

Sequence Viewer

Length: 357 bp
ATGTTCTTGCTGGGCCTGTGGTTGTTGTGGAGTATGGCTTTGTTCATTTCCAGAAGAATCGTACGTTCATTTGGTTCTGGTTTAGCATCAGGCCATGTTTCCAAGGGTGGATCAGTGTTTTGTGCTTGTCGAATGCTTTCGACATTAGTCTTGACCCATGAGTCGAGTGGAGATCCGCCTTCTTTTGGCTATCAGTTAAGACATAGGAGAGGAAAATCAAAAACTACTCGTGCTCAGAACATAAACACAAAGGATGTGAGGTTTGTCTATGTTTTTCTACCTCCTGCAATGCTAGGCCTAGAAGTAGCACCAGTTTGGTTCTTAATGGAATTTCCTGGGGCACATTGTTTCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L4

Protein Analysis

118

Amino Acids

13.25

Weight (kDa)

10.57

Isoelectric Point (pI)

52.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 160
AciI CCGC 1 cut(s) 176
AclWI GGATC 2 cut(s) 118, 167
AcsI RAATTY 1 cut(s) 329
AfaI GTAC 1 cut(s) 63
AfiI CCNNNNNNNGG 1 cut(s) 185
AjnI CCWGG 1 cut(s) 334
Alw21I GWGCWC 1 cut(s) 235
AlwI GGATC 2 cut(s) 118, 167
AoxI GGCC 3 cut(s) 13, 91, 295
ApoI RAATTY 1 cut(s) 329
Asp700I GAANNNNTTC 1 cut(s) 136
AspS9I GGNCC 1 cut(s) 13
BaeGI GKGCMC 1 cut(s) 343
BauI CACGAG 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 235
BciT130I CCWGG 1 cut(s) 336
BfaI CTAG 2 cut(s) 293, 299
Bme1390I CCNGG 1 cut(s) 336
BmgT120I GGNCC 1 cut(s) 13
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 1 cut(s) 95
BoxI GACNNNNGTC 1 cut(s) 146
BsaJI CCNNGG 2 cut(s) 102, 335
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 311
Bse3DI GCAATG 1 cut(s) 294
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 102, 335
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 311
BseSI GKGCMC 1 cut(s) 343
BseYI CCCAGC 1 cut(s) 10
BshFI GGCC 3 cut(s) 15, 93, 297
BsiHKAI GWGCWC 1 cut(s) 235
BsiWI CGTACG 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 185
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 3 cut(s) 15, 93, 297
Bsp1286I GDGCHC 2 cut(s) 235, 343
Bsp143I GATC 2 cut(s) 110, 172
BspACI CCGC 1 cut(s) 176
BspANI GGCC 3 cut(s) 15, 93, 297
BspCNI CTCAG 1 cut(s) 247
BspPI GGATC 2 cut(s) 118, 167
BsrDI GCAATG 1 cut(s) 294
BsrI ACTGG 1 cut(s) 311
BssECI CCNNGG 2 cut(s) 102, 335
BssMI GATC 2 cut(s) 110, 172
BssSI CACGAG 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 102
Bst2BI CACGAG 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 336
BstDEI CTNAG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 2 cut(s) 113, 175
BstMBI GATC 2 cut(s) 110, 172
BstNI CCWGG 1 cut(s) 336
BstPAI GACNNNNGTC 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 334
BstSLI GKGCMC 1 cut(s) 343
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BsuRI GGCC 3 cut(s) 15, 93, 297
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 62
CviAII CATG 2 cut(s) 95, 158
CviJI RGCY 5 cut(s) 15, 38, 93, 189, 297
CviKI_1 RGCY 5 cut(s) 15, 38, 93, 189, 297
CviQI GTAC 1 cut(s) 62
DdeI CTNAG 1 cut(s) 234
DpnI GATC 2 cut(s) 112, 174
DpnII GATC 2 cut(s) 110, 172
DrdI GACNNNNNNGTC 1 cut(s) 160
DseDI GACNNNNNNGTC 1 cut(s) 160
EciI GGCGGA 1 cut(s) 165
Eco130I CCWWGG 1 cut(s) 102
Eco147I AGGCCT 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 2 cut(s) 98, 161
FaiI YATR 6 cut(s) 35, 96, 159, 204, 242, 270
FatI CATG 2 cut(s) 94, 157
FokI GGATG 1 cut(s) 266
FspBI CTAG 2 cut(s) 293, 299
GsaI CCCAGC 1 cut(s) 14
HaeIII GGCC 3 cut(s) 15, 93, 297
Hin1II CATG 2 cut(s) 98, 161
HinfI GANTC 2 cut(s) 57, 161
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 2 cut(s) 51, 151
HpyAV CCTTC 1 cut(s) 189
HpyCH4IV ACGT 1 cut(s) 64
HpyCH4V TGCA 1 cut(s) 287
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 1 cut(s) 64
Hsp92II CATG 2 cut(s) 98, 161
Kzo9I GATC 2 cut(s) 110, 172
LpnPI CCDG 9 cut(s) 29, 63, 64, 75, 297, 321, 324, 337, 348
LweI GCATC 1 cut(s) 95
MaeI CTAG 2 cut(s) 293, 299
MaeII ACGT 1 cut(s) 64
MalI GATC 2 cut(s) 112, 174
MboI GATC 2 cut(s) 110, 172
MboII GAAGA 1 cut(s) 66
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 2 cut(s) 235, 343
MluCI AATT 1 cut(s) 329
MlyI GAGTC 1 cut(s) 170
MnlI CCTC 3 cut(s) 203, 252, 291
MroXI GAANNNNTTC 1 cut(s) 136
MseI TTAA 2 cut(s) 197, 323
MspR9I CCNGG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 138
MvaI CCWGG 1 cut(s) 336
NdeII GATC 2 cut(s) 110, 172
NlaIII CATG 2 cut(s) 98, 161
PceI AGGCCT 1 cut(s) 297
PctI GAATGC 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 136
PfeI GAWTC 1 cut(s) 57
Pfl23II CGTACG 1 cut(s) 61
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PshAI GACNNNNGTC 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 334
PspFI CCCAGC 1 cut(s) 10
PspGI CCWGG 1 cut(s) 334
PspLI CGTACG 1 cut(s) 61
PspPI GGNCC 1 cut(s) 13
PsuI RGATCY 1 cut(s) 172
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
SaqAI TTAA 2 cut(s) 197, 323
Sau3AI GATC 2 cut(s) 110, 172
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 2 cut(s) 235, 343
SetI ASST 4 cut(s) 67, 263, 283, 356
SfaNI GCATC 1 cut(s) 95
Sse9I AATT 1 cut(s) 329
SseBI AGGCCT 1 cut(s) 297
SsiI CCGC 1 cut(s) 176
SspMI CTAG 2 cut(s) 293, 299
StuI AGGCCT 1 cut(s) 297
StyD4I CCNGG 1 cut(s) 334
StyI CCWWGG 1 cut(s) 102
TaiI ACGT 1 cut(s) 67
TaqI TCGA 3 cut(s) 130, 140, 164
TasI AATT 1 cut(s) 329
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 2 cut(s) 197, 323
Tru9I TTAA 2 cut(s) 197, 323
TscAI CASTG 1 cut(s) 120
TspDTI ATGAA 2 cut(s) 34, 57
TspRI CASTG 1 cut(s) 120
XapI RAATTY 1 cut(s) 329
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 136
XspI CTAG 2 cut(s) 293, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.