Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000652

Physical Location & Seq

Genomic Coordinates Reverse (-)

12859384 .. 12861933

Gene Structure 2550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG084600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGATATCAACTGATTTGAACTTGGGAATTGTTGTGACATGTTTTCGTACTCTTGCCGACATGCTCAATCTGCTTCATATTTTCATCAAGTTGAGGACAACTTATATATCACCAAAAAAGATTGTTTTTGGGAGGGGTGAACTTGTTATGGATCCCAAAAAGATTGCTAGAAGGTATCTGAGATCAGATTTCTTCGTAGATCTTATAGCTACACTGCCTCTCCCTCAGATTGTCCTATGGTTCATCATACCTGCAGTTAAAAGCTCCAGTTCTGGCCATACCCATAATGCCCTTGTACTGATTGTTCTGCTCCAATATGTTCCTAGATTGTATCTTATTTTCCCTCTTAAGTTCTCAGATCATCAAAGCCTGGTGTGGTCACAAAGACAGCTTGGGCCGGGGCTGCGTATAATCTCATACTCTATAGTCTACATGTTAGCTAGTCATGTCTTAGGTGCTTCATGGTACCTATTATCAATCGAACGGTATGCAACTTGCTGGAAGTCCCAATGCAGAAAAGAAGTTGACCCCATCAAGTGTTTTCTCAGCTACTTGGATTGTGGTTCTTTGAACAATGATGGATGCCTGCAGTGGATAAACAGTACTCATGTGTTTAGTAACTGCAACCCGGAGAACTCCATTGGTTTCAATTATGGCATATTTGAGAATGCACTGACCAACAATGTAGTCTCCTCCTCGTTTCTAGAGAAGTACATGTATTGTCTTTGGTGGGGATTACAGAACTTGAGCTCCTATGGTCAGACTTTGACTACAAGCACATATATCAGTGAAACTTCTTTTGCTATACTCATTGCTATTTTGTGTCTGGTTCTGTTTGCACACTTAATTGGAAATATGCAGTATCTTTTCATGTACAATCTTGCTTCGAGAAACCAGTACTTTAAAAATCCGCCTTCTTTTGACTATCAGTTAAGACATAGGAGAGGAAAATCAGAAACTACTCGTGCTCAGTACATAAACACAAAGGATGTGAGGTTTGTCTATGTTTTTCTACCTCCTGCAATGCTAGGCCTAGAAGTAGCACCAGTTTGGTTCTTAATGGAATTTCCTGGGGCACATTGTTTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

363

Amino Acids

41.79

Weight (kDa)

9.07

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	10 - 290	2.3e-10	Ion transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18010 AT4G18010
fragaria_vesca	FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica	MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica	Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata	RLG00000003205
rosa_multiflora	Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa	Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha	Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana	Rw7G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	259
Acc65I	GGTACC	1 cut(s)	465
AccB1I	GGYRCC	1 cut(s)	465
AccI	GTMKAC	1 cut(s)	429
AciI	CCGC	1 cut(s)	911
AclWI	GGATC	2 cut(s)	146, 159
AcoI	YGGCCR	1 cut(s)	274
AcsI	RAATTY	1 cut(s)	1064
AfaI	GTAC	8 cut(s)	49, 297, 467, 604, 713, 875, 899, 974
AflII	CTTAAG	1 cut(s)	347
AflIII	ACRYGT	3 cut(s)	38, 432, 714
AgsI	TTSAA	3 cut(s)	19, 571, 649
AjnI	CCWGG	2 cut(s)	369, 1069
AloI	GAACNNNNNNTCC	2 cut(s)	734, 766
AluBI	AGCT	6 cut(s)	209, 264, 391, 440, 549, 750
AluI	AGCT	6 cut(s)	209, 264, 391, 440, 549, 750
Alw21I	GWGCWC	2 cut(s)	752, 970
Alw26I	GTCTC	1 cut(s)	694
AlwI	GGATC	2 cut(s)	146, 159
AoxI	GGCC	3 cut(s)	274, 395, 1030
ApeKI	GCWGC	1 cut(s)	403
ApoI	RAATTY	1 cut(s)	1064
Asp718I	GGTACC	1 cut(s)	465
AspS9I	GGNCC	1 cut(s)	395
AsuC2I	CCSGG	2 cut(s)	399, 629
AsuHPI	GGTGA	2 cut(s)	102, 149
BaeGI	GKGCMC	1 cut(s)	1078
BalI	TGGCCA	1 cut(s)	276
BamHI	GGATCC	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	465
BanII	GRGCYC	1 cut(s)	752
BauI	CACGAG	1 cut(s)	963
Bbv12I	GWGCWC	2 cut(s)	752, 970
BbvI	GCAGC	1 cut(s)	390
BccI	CCATC	2 cut(s)	539, 572
BcgI	CGANNNNNNTGC	2 cut(s)	470, 504
BciT130I	CCWGG	2 cut(s)	371, 1071
BcnI	CCSGG	2 cut(s)	399, 629
BcoDI	GTCTC	1 cut(s)	694
BfaI	CTAG	6 cut(s)	168, 324, 441, 704, 1028, 1034
BfmI	CTRYAG	3 cut(s)	252, 423, 587
BfrI	CTTAAG	1 cut(s)	347
BfuAI	ACCTGC	1 cut(s)	259
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
BmcAI	AGTACT	2 cut(s)	604, 899
Bme1390I	CCNGG	4 cut(s)	371, 399, 629, 1071
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	2 cut(s)	153, 467
BmrFI	CCNGG	4 cut(s)	371, 399, 629, 1071
BmsI	GCATC	1 cut(s)	572
BpmI	CTGGAG	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	766
BpuMI	CCSGG	2 cut(s)	399, 629
BsaJI	CCNNGG	2 cut(s)	398, 1070
BsaXI	ACNNNNNCTCC	4 cut(s)	204, 234, 734, 764
Bse1I	ACTGG	3 cut(s)	267, 895, 1046
Bse3DI	GCAATG	2 cut(s)	810, 1029
BseBI	CCWGG	2 cut(s)	371, 1071
BseDI	CCNNGG	2 cut(s)	398, 1070
BseGI	GGATG	2 cut(s)	587, 994
BseMI	GCAATG	2 cut(s)	810, 1029
BseMII	CTCAG	5 cut(s)	170, 239, 369, 559, 983
BseNI	ACTGG	3 cut(s)	267, 895, 1046
BseRI	GAGGAG	2 cut(s)	682, 685
BseSI	GKGCMC	1 cut(s)	1078
BseXI	GCAGC	1 cut(s)	390
BshFI	GGCC	3 cut(s)	276, 397, 1032
BshNI	GGYRCC	1 cut(s)	465
BsiHKAI	GWGCWC	2 cut(s)	752, 970
BsiSI	CCGG	2 cut(s)	398, 629
BslFI	GGGAC	1 cut(s)	490
BsmAI	GTCTC	1 cut(s)	694
BsmFI	GGGAC	1 cut(s)	490
BsmI	GAATGC	1 cut(s)	673
BsnI	GGCC	3 cut(s)	276, 397, 1032
Bsp1286I	GDGCHC	3 cut(s)	752, 970, 1078
Bsp1407I	TGTACA	1 cut(s)	873
Bsp143I	GATC	4 cut(s)	151, 182, 199, 358
BspACI	CCGC	1 cut(s)	911
BspANI	GGCC	3 cut(s)	276, 397, 1032
BspCNI	CTCAG	5 cut(s)	171, 238, 368, 558, 982
BspLI	GGNNCC	2 cut(s)	153, 467
BspMAI	CTGCAG	2 cut(s)	256, 591
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	2 cut(s)	146, 159
BspT107I	GGYRCC	1 cut(s)	465
BspTI	CTTAAG	1 cut(s)	347
BsrDI	GCAATG	2 cut(s)	810, 1029
BsrGI	TGTACA	1 cut(s)	873
BsrI	ACTGG	3 cut(s)	267, 895, 1046
BssECI	CCNNGG	2 cut(s)	398, 1070
BssMI	GATC	4 cut(s)	151, 182, 199, 358
BssSI	CACGAG	1 cut(s)	963
Bst2BI	CACGAG	1 cut(s)	963
Bst2UI	CCWGG	2 cut(s)	371, 1071
Bst4CI	ACNGT	2 cut(s)	486, 602
BstAFI	CTTAAG	1 cut(s)	347
BstAUI	TGTACA	1 cut(s)	873
BstC8I	GCNNGC	1 cut(s)	587
BstDEI	CTNAG	6 cut(s)	179, 225, 355, 451, 545, 969
BstF5I	GGATG	2 cut(s)	587, 994
BstKTI	GATC	4 cut(s)	154, 185, 202, 361
BstMAI	GTCTC	1 cut(s)	694
BstMBI	GATC	4 cut(s)	151, 182, 199, 358
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 403
BstNI	CCWGG	2 cut(s)	371, 1071
BstNSI	RCATGY	4 cut(s)	42, 64, 436, 718
BstSCI	CCNGG	4 cut(s)	369, 397, 627, 1069
BstSFI	CTRYAG	3 cut(s)	252, 423, 587
BstSLI	GKGCMC	1 cut(s)	1078
BstV1I	GCAGC	1 cut(s)	390
BstX2I	RGATCY	2 cut(s)	151, 199
BstYI	RGATCY	2 cut(s)	151, 199
BsuRI	GGCC	3 cut(s)	276, 397, 1032
BtsCI	GGATG	2 cut(s)	587, 994
BtsI	GCAGTG	2 cut(s)	212, 596
BtsIMutI	CAGTG	4 cut(s)	212, 596, 671, 793
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	587
Cfr13I	GGNCC	1 cut(s)	395
Csp6I	GTAC	8 cut(s)	48, 296, 466, 603, 712, 874, 898, 973
CviAII	CATG	9 cut(s)	39, 61, 433, 446, 462, 608, 715, 871, 1087
CviQI	GTAC	8 cut(s)	48, 296, 466, 603, 712, 874, 898, 973
DdeI	CTNAG	6 cut(s)	179, 225, 355, 451, 545, 969
DpnI	GATC	4 cut(s)	153, 184, 201, 360
DpnII	GATC	4 cut(s)	151, 182, 199, 358
DraI	TTTAAA	1 cut(s)	904
EaeI	YGGCCR	1 cut(s)	274
EciI	GGCGGA	1 cut(s)	900
Ecl136II	GAGCTC	1 cut(s)	750
Eco147I	AGGCCT	1 cut(s)	1032
Eco24I	GRGCYC	1 cut(s)	752
Eco32I	GATATC	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	750
EcoICRI	GAGCTC	1 cut(s)	750
EcoRII	CCWGG	2 cut(s)	369, 1069
EcoRV	GATATC	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	752
FaeI	CATG	9 cut(s)	42, 64, 436, 449, 465, 611, 718, 874, 1090
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	9 cut(s)	38, 60, 432, 445, 461, 607, 714, 870, 1086
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	2 cut(s)	594, 1001
FriOI	GRGCYC	1 cut(s)	752
Fsp4HI	GCNGC	1 cut(s)	404
FspBI	CTAG	6 cut(s)	168, 324, 441, 704, 1028, 1034
GluI	GCNGC	1 cut(s)	404
GsuI	CTGGAG	1 cut(s)	250
HaeIII	GGCC	3 cut(s)	276, 397, 1032
HapII	CCGG	2 cut(s)	398, 629
Hin1II	CATG	9 cut(s)	42, 64, 436, 449, 465, 611, 718, 874, 1090
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HpaII	CCGG	2 cut(s)	398, 629
HphI	GGTGA	2 cut(s)	102, 149
Hpy166II	GTNNAC	3 cut(s)	140, 430, 526
Hpy188I	TCNGA	6 cut(s)	180, 187, 228, 358, 762, 955
Hpy188III	TCNNGA	2 cut(s)	704, 888
Hpy8I	GTNNAC	3 cut(s)	140, 430, 526
HpyAV	CCTTC	2 cut(s)	165, 924
HpyCH4III	ACNGT	2 cut(s)	486, 602
HpyCH4V	TGCA	9 cut(s)	254, 491, 513, 589, 624, 671, 839, 859, 1022
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 403
HpyF3I	CTNAG	6 cut(s)	179, 225, 355, 451, 545, 969
Hsp92II	CATG	9 cut(s)	42, 64, 436, 449, 465, 611, 718, 874, 1090
KpnI	GGTACC	1 cut(s)	469
Kzo9I	GATC	4 cut(s)	151, 182, 199, 358
LmnI	GCTCC	3 cut(s)	269, 315, 755
Lsp1109I	GCAGC	1 cut(s)	390
LweI	GCATC	1 cut(s)	572
MaeI	CTAG	6 cut(s)	168, 324, 441, 704, 1028, 1034
MaeIII	GTNAC	3 cut(s)	34, 378, 617
MalI	GATC	4 cut(s)	153, 184, 201, 360
MboI	GATC	4 cut(s)	151, 182, 199, 358
MboII	GAAGA	1 cut(s)	184
MflI	RGATCY	2 cut(s)	151, 199
MhlI	GDGCHC	3 cut(s)	752, 970, 1078
MlsI	TGGCCA	1 cut(s)	276
MluCI	AATT	4 cut(s)	27, 649, 846, 1064
MluNI	TGGCCA	1 cut(s)	276
Mox20I	TGGCCA	1 cut(s)	276
MscI	TGGCCA	1 cut(s)	276
MseI	TTAA	6 cut(s)	258, 348, 845, 903, 932, 1058
Msp20I	TGGCCA	1 cut(s)	276
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	2 cut(s)	398, 629
MspR9I	CCNGG	4 cut(s)	371, 399, 629, 1071
Mva1269I	GAATGC	1 cut(s)	673
MvaI	CCWGG	2 cut(s)	371, 1071
MwoI	GCNNNNNNNGC	2 cut(s)	70, 403
NciI	CCSGG	2 cut(s)	399, 629
NdeII	GATC	4 cut(s)	151, 182, 199, 358
NlaIII	CATG	9 cut(s)	42, 64, 436, 449, 465, 611, 718, 874, 1090
NlaIV	GGNNCC	2 cut(s)	153, 467
NmuCI	GTSAC	2 cut(s)	34, 378
NspI	RCATGY	4 cut(s)	42, 64, 436, 718
PceI	AGGCCT	1 cut(s)	1032
PciI	ACATGT	3 cut(s)	38, 432, 714
PctI	GAATGC	1 cut(s)	673
PkrI	GCNGC	1 cut(s)	405
PscI	ACATGT	3 cut(s)	38, 432, 714
Psp124BI	GAGCTC	1 cut(s)	752
Psp6I	CCWGG	2 cut(s)	369, 1069
PspGI	CCWGG	2 cut(s)	369, 1069
PspN4I	GGNNCC	2 cut(s)	153, 467
PspPI	GGNCC	1 cut(s)	395
PsrI	GAACNNNNNNTAC	2 cut(s)	288, 320
PstI	CTGCAG	2 cut(s)	256, 591
PsuI	RGATCY	2 cut(s)	151, 199
RsaI	GTAC	8 cut(s)	49, 297, 467, 604, 713, 875, 899, 974
RsaNI	GTAC	8 cut(s)	48, 296, 466, 603, 712, 874, 898, 973
SacI	GAGCTC	1 cut(s)	752
SaqAI	TTAA	6 cut(s)	258, 348, 845, 903, 932, 1058
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	4 cut(s)	151, 182, 199, 358
Sau96I	GGNCC	1 cut(s)	395
ScaI	AGTACT	2 cut(s)	604, 899
ScrFI	CCNGG	4 cut(s)	371, 399, 629, 1071
SduI	GDGCHC	3 cut(s)	752, 970, 1078
SfaNI	GCATC	1 cut(s)	572
SfcI	CTRYAG	3 cut(s)	252, 423, 587
SmlI	CTYRAG	2 cut(s)	347, 745
SmoI	CTYRAG	2 cut(s)	347, 745
Sse9I	AATT	4 cut(s)	27, 649, 846, 1064
SseBI	AGGCCT	1 cut(s)	1032
SsiI	CCGC	1 cut(s)	911
SspMI	CTAG	6 cut(s)	168, 324, 441, 704, 1028, 1034
SstI	GAGCTC	1 cut(s)	752
StuI	AGGCCT	1 cut(s)	1032
StyD4I	CCNGG	4 cut(s)	369, 397, 627, 1069
TaaI	ACNGT	2 cut(s)	486, 602
TaqI	TCGA	2 cut(s)	480, 887
TasI	AATT	4 cut(s)	27, 649, 846, 1064
TatI	WGTACW	6 cut(s)	295, 602, 711, 873, 897, 972
Tru1I	TTAA	6 cut(s)	258, 348, 845, 903, 932, 1058
Tru9I	TTAA	6 cut(s)	258, 348, 845, 903, 932, 1058
TscAI	CASTG	4 cut(s)	219, 596, 678, 793
TseFI	GTSAC	2 cut(s)	34, 378
TseI	GCWGC	1 cut(s)	403
Tsp45I	GTSAC	2 cut(s)	34, 378
TspDTI	ATGAA	6 cut(s)	65, 73, 232, 450, 859, 1075
TspRI	CASTG	4 cut(s)	219, 596, 678, 793
Vha464I	CTTAAG	1 cut(s)	347
XapI	RAATTY	1 cut(s)	1064
XbaI	TCTAGA	1 cut(s)	703
XceI	RCATGY	4 cut(s)	42, 64, 436, 718
XmiI	GTMKAC	1 cut(s)	429
XspI	CTAG	6 cut(s)	168, 324, 441, 704, 1028, 1034
ZrmI	AGTACT	2 cut(s)	604, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.