Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000652

Physical Location & Seq

Genomic Coordinates Reverse (-)

2372385 .. 2375100

Gene Structure 2716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00001950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTTAGCTAGTCATGTCTTAGGTGCTTCATGGTACCTATTATCAATCGAACGGTATGCAACTTGCTGGAAGTCTCAATGCAGAAAAGAAGTTGACCCCATCAAGTGTTTTCTCAGCTACTTGGATTGTGGTTCTTTGAACAATGATGGACGCCTGCAGTGGATAAACAGTACTCATGTGTTTAGTAACTGCAACTCGGAGAACTCCATTGGTTTCAATTATGGCATATTTGAGAATGCACTGACCAACAATGTAGTCTCCTCCTCGTTTCTAGAGAAGTACATGCATTGTCTTTGGTGGGGATTACAGAACTTGAGCTCCTATGGTCAGACTTTGACTACAAGCACATATACCAGTGAAACTTCTTTTGCTATACTCATTGCTATTTTGGGTCTGGTTCTGTTTGCACACTTAATTGGAAATATGCAGGTATGTTACCTTGTTTATGATCAAAACATCATATTGTGTTTTCTGACAGAGGAAAAAAAATGCTGTAACTTCTTCCACTTCAGTAACAAGGTTTCTTCTTTTCTTCATTCTGATATTTTAGACACATTCTATGTTGTTAACTCATACTCTGTTTCAATTTTATATTTCCAAATAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

202

Amino Acids

23.1

Weight (kDa)

5.8

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	1 - 143	4.2e-07	Ion transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18010 AT4G18010
fragaria_vesca	FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica	MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica	Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata	RLG00000003205
rosa_multiflora	Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa	Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha	Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana	Rw7G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	418
Acc65I	GGTACC	1 cut(s)	33
AccB1I	GGYRCC	1 cut(s)	33
AcuI	CTGAAG	1 cut(s)	493
AcyI	GRCGYC	1 cut(s)	151
AfaI	GTAC	3 cut(s)	35, 172, 281
AgsI	TTSAA	3 cut(s)	139, 217, 585
AloI	GAACNNNNNNTCC	2 cut(s)	302, 334
AluBI	AGCT	4 cut(s)	8, 117, 318, 605
AluI	AGCT	4 cut(s)	8, 117, 318, 605
Alw21I	GWGCWC	1 cut(s)	320
Alw26I	GTCTC	2 cut(s)	78, 262
Asp718I	GGTACC	1 cut(s)	33
BanI	GGYRCC	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	320
BccI	CCATC	2 cut(s)	107, 140
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BclI	TGATCA	1 cut(s)	448
BcoDI	GTCTC	2 cut(s)	78, 262
BfaI	CTAG	2 cut(s)	9, 272
BfmI	CTRYAG	1 cut(s)	155
BfuAI	ACCTGC	1 cut(s)	418
BmcAI	AGTACT	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	334
BsaHI	GRCGYC	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bse1I	ACTGG	1 cut(s)	354
Bse3DI	GCAATG	1 cut(s)	378
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	354
BseRI	GAGGAG	2 cut(s)	250, 253
BshNI	GGYRCC	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	320
BsmAI	GTCTC	2 cut(s)	78, 262
BsmI	GAATGC	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	1 cut(s)	448
BspCNI	CTCAG	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	35
BspMAI	CTGCAG	1 cut(s)	159
BspMI	ACCTGC	1 cut(s)	418
BspT107I	GGYRCC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	354
BssMI	GATC	1 cut(s)	448
BssNI	GRCGYC	1 cut(s)	151
Bst4CI	ACNGT	2 cut(s)	54, 170
BstACI	GRCGYC	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	155
BstDEI	CTNAG	2 cut(s)	19, 113
BstKTI	GATC	1 cut(s)	451
BstMAI	GTCTC	2 cut(s)	78, 262
BstMBI	GATC	1 cut(s)	448
BstNSI	RCATGY	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	155
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	3 cut(s)	164, 239, 361
BveI	ACCTGC	1 cut(s)	418
Cac8I	GCNNGC	1 cut(s)	155
CseI	GACGC	1 cut(s)	159
Csp6I	GTAC	3 cut(s)	34, 171, 280
CviAII	CATG	4 cut(s)	14, 30, 176, 283
CviJI	RGCY	4 cut(s)	8, 117, 318, 605
CviKI_1	RGCY	4 cut(s)	8, 117, 318, 605
CviQI	GTAC	3 cut(s)	34, 171, 280
DdeI	CTNAG	2 cut(s)	19, 113
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
Ecl136II	GAGCTC	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	320
Eco53kI	GAGCTC	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	493
EcoICRI	GAGCTC	1 cut(s)	318
EcoT22I	ATGCAT	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	320
FaeI	CATG	4 cut(s)	17, 33, 179, 286
FatI	CATG	4 cut(s)	13, 29, 175, 282
FbaI	TGATCA	1 cut(s)	448
FriOI	GRGCYC	1 cut(s)	320
FspBI	CTAG	2 cut(s)	9, 272
HgaI	GACGC	1 cut(s)	159
Hin1I	GRCGYC	1 cut(s)	151
Hin1II	CATG	4 cut(s)	17, 33, 179, 286
HincII	GTYRAC	2 cut(s)	94, 568
HindII	GTYRAC	2 cut(s)	94, 568
HpaI	GTTAAC	1 cut(s)	568
Hpy166II	GTNNAC	2 cut(s)	94, 568
Hpy188I	TCNGA	4 cut(s)	199, 330, 474, 541
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	2 cut(s)	94, 568
HpyCH4III	ACNGT	2 cut(s)	54, 170
HpyCH4V	TGCA	8 cut(s)	59, 81, 157, 192, 239, 286, 407, 427
HpyF3I	CTNAG	2 cut(s)	19, 113
Hsp92I	GRCGYC	1 cut(s)	151
Hsp92II	CATG	4 cut(s)	17, 33, 179, 286
KpnI	GGTACC	1 cut(s)	37
Ksp22I	TGATCA	1 cut(s)	448
KspAI	GTTAAC	1 cut(s)	568
Kzo9I	GATC	1 cut(s)	448
LmnI	GCTCC	1 cut(s)	323
LpnPI	CCDG	5 cut(s)	52, 167, 367, 380, 413
MaeI	CTAG	2 cut(s)	9, 272
MaeIII	GTNAC	4 cut(s)	185, 434, 494, 512
MalI	GATC	1 cut(s)	450
MboI	GATC	1 cut(s)	448
MboII	GAAGA	3 cut(s)	493, 516, 524
MhlI	GDGCHC	1 cut(s)	320
MluCI	AATT	3 cut(s)	217, 414, 585
MnlI	CCTC	3 cut(s)	271, 274, 472
Mph1103I	ATGCAT	1 cut(s)	288
MseI	TTAA	2 cut(s)	413, 567
Mva1269I	GAATGC	1 cut(s)	241
NdeII	GATC	1 cut(s)	448
NlaIII	CATG	4 cut(s)	17, 33, 179, 286
NlaIV	GGNNCC	1 cut(s)	35
NsiI	ATGCAT	1 cut(s)	288
NspI	RCATGY	1 cut(s)	286
PctI	GAATGC	1 cut(s)	241
Psp124BI	GAGCTC	1 cut(s)	320
PspN4I	GGNNCC	1 cut(s)	35
PstI	CTGCAG	1 cut(s)	159
RsaI	GTAC	3 cut(s)	35, 172, 281
RsaNI	GTAC	3 cut(s)	34, 171, 280
SacI	GAGCTC	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	413, 567
Sau3AI	GATC	1 cut(s)	448
ScaI	AGTACT	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	320
SetI	ASST	9 cut(s)	10, 25, 39, 119, 320, 432, 441, 522, 607
SfcI	CTRYAG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	3 cut(s)	217, 414, 585
SspMI	CTAG	2 cut(s)	9, 272
SstI	GAGCTC	1 cut(s)	320
TaaI	ACNGT	2 cut(s)	54, 170
TaqI	TCGA	1 cut(s)	48
TasI	AATT	3 cut(s)	217, 414, 585
TatI	WGTACW	2 cut(s)	170, 279
Tru1I	TTAA	2 cut(s)	413, 567
Tru9I	TTAA	2 cut(s)	413, 567
TscAI	CASTG	3 cut(s)	164, 246, 361
TspDTI	ATGAA	2 cut(s)	18, 524
TspRI	CASTG	3 cut(s)	164, 246, 361
XbaI	TCTAGA	1 cut(s)	271
XceI	RCATGY	1 cut(s)	286
XspI	CTAG	2 cut(s)	9, 272
ZrmI	AGTACT	1 cut(s)	172
Zsp2I	ATGCAT	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.