Rroxscaffold_7G00182410
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000652
Physical Location & Seq
Reverse (-)
21417502 .. 21420288
2787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00182410.1

Sequence Viewer

Length: 423 bp
ATGATGTTCAATGGAATGGCAGTGCTTTCGATGACTATAACCAAGCTTCCAGCGTTTTATAGGCAAAGAAAGCTACTCTTCTTTCCACCATGGGCATATGCACTTGCAGCATGGCTTCTCAAGATCCCTCTCACCTATGTCGAAGTTGGTGCTTGGGTGTTTATCACCTATTATGTCATTGGATTTGATCCAAACGTTGGAAGATTCATACTTAGAATTCCAACAATGGCTACTTCATTATTCAAATTCATTGCTGGAGCTGGTAGAAGCTTGACTATTGCTAATACATTTTGCCTCAATTGCAATATGCACGTCTGTGGCTTTGTGCGGCTATATCCTGTCAAGAGAGAATATAAAGAAATGGTGGATATGGGGTTACTGGATATTACCTATGATGTATGGGCAGAATGCAATTGTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

140

Amino Acids

16.1

Weight (kDa)

9.04

Isoelectric Point (pI)

32.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 1 - 97 6.5e-13 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 197
AciI CCGC 1 cut(s) 328
AclI AACGTT 1 cut(s) 195
AclWI GGATC 2 cut(s) 118, 182
AcsI RAATTY 2 cut(s) 216, 245
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 2 cut(s) 10, 244
AjiI CACGTC 1 cut(s) 313
AleI CACNNNNGTG 1 cut(s) 315
AluBI AGCT 4 cut(s) 46, 73, 260, 270
AluI AGCT 4 cut(s) 46, 73, 260, 270
AlwI GGATC 2 cut(s) 118, 182
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 2 cut(s) 216, 245
AsuHPI GGTGA 2 cut(s) 124, 157
BbvI GCAGC 1 cut(s) 119
BcgI CGANNNNNNTGC 4 cut(s) 9, 43, 131, 165
BisI GCNGC 2 cut(s) 108, 329
BlsI GCNGC 2 cut(s) 109, 330
BmgBI CACGTC 1 cut(s) 313
BpmI CTGGAG 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 89
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 384
Bse3DI GCAATG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMI GCAATG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 384
BseXI GCAGC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 197
BsmI GAATGC 1 cut(s) 413
Bsp143I GATC 2 cut(s) 123, 187
Bsp19I CCATGG 1 cut(s) 89
BspACI CCGC 1 cut(s) 328
BspPI GGATC 2 cut(s) 118, 182
BsrDI GCAATG 1 cut(s) 249
BsrI ACTGG 1 cut(s) 384
BssECI CCNNGG 1 cut(s) 89
BssMI GATC 2 cut(s) 123, 187
BssT1I CCWWGG 1 cut(s) 89
Bst6I CTCTTC 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 212
BstDSI CCRYGG 1 cut(s) 89
BstKTI GATC 2 cut(s) 126, 190
BstMBI GATC 2 cut(s) 123, 187
BstMWI GCNNNNNNNGC 3 cut(s) 70, 107, 300
BstV1I GCAGC 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BtgI CCRYGG 1 cut(s) 89
BtrI CACGTC 1 cut(s) 313
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
CviAII CATG 2 cut(s) 90, 111
CviJI RGCY 8 cut(s) 46, 73, 115, 230, 260, 270, 321, 331
CviKI_1 RGCY 8 cut(s) 46, 73, 115, 230, 260, 270, 321, 331
DdeI CTNAG 1 cut(s) 212
DpnI GATC 2 cut(s) 125, 189
DpnII GATC 2 cut(s) 123, 187
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Eco130I CCWWGG 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 89
FaeI CATG 2 cut(s) 93, 114
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FatI CATG 2 cut(s) 89, 110
FauNDI CATATG 1 cut(s) 97
Fnu4HI GCNGC 2 cut(s) 108, 329
Fsp4HI GCNGC 2 cut(s) 108, 329
GluI GCNGC 2 cut(s) 108, 329
GsuI CTGGAG 1 cut(s) 276
Hin1II CATG 2 cut(s) 93, 114
HindIII AAGCTT 2 cut(s) 44, 268
HinfI GANTC 1 cut(s) 204
HphI GGTGA 2 cut(s) 124, 157
Hpy188III TCNNGA 2 cut(s) 121, 343
HpyCH4IV ACGT 2 cut(s) 195, 312
HpyCH4V TGCA 5 cut(s) 101, 107, 303, 310, 411
HpyF10VI GCNNNNNNNGC 3 cut(s) 70, 107, 300
HpyF3I CTNAG 1 cut(s) 212
HpySE526I ACGT 2 cut(s) 195, 312
Hsp92II CATG 2 cut(s) 93, 114
Kzo9I GATC 2 cut(s) 123, 187
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 5 cut(s) 63, 240, 246, 351, 365
Lsp1109I GCAGC 1 cut(s) 119
MaeII ACGT 2 cut(s) 195, 312
MaeIII GTNAC 1 cut(s) 375
MalI GATC 2 cut(s) 125, 189
MboI GATC 2 cut(s) 123, 187
MboII GAAGA 2 cut(s) 70, 213
MfeI CAATTG 2 cut(s) 298, 412
MflI RGATCY 1 cut(s) 123
MluCI AATT 4 cut(s) 216, 245, 298, 412
MmeI TCCRAC 2 cut(s) 178, 245
MnlI CCTC 2 cut(s) 138, 305
MslI CAYNNNNRTG 1 cut(s) 315
MunI CAATTG 2 cut(s) 298, 412
Mva1269I GAATGC 1 cut(s) 413
MwoI GCNNNNNNNGC 3 cut(s) 70, 107, 300
NcoI CCATGG 1 cut(s) 89
NdeI CATATG 1 cut(s) 97
NdeII GATC 2 cut(s) 123, 187
NlaIII CATG 2 cut(s) 93, 114
OliI CACNNNNGTG 1 cut(s) 315
PctI GAATGC 1 cut(s) 413
PfeI GAWTC 1 cut(s) 204
PflMI CCANNNNNTGG 1 cut(s) 197
PkrI GCNGC 2 cut(s) 109, 330
Psp1406I AACGTT 1 cut(s) 195
PsuI RGATCY 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 315
SatI GCNGC 2 cut(s) 108, 329
Sau3AI GATC 2 cut(s) 123, 187
SetI ASST 9 cut(s) 48, 75, 137, 170, 198, 262, 272, 315, 392
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 4 cut(s) 216, 245, 298, 412
SsiI CCGC 1 cut(s) 328
StyI CCWWGG 1 cut(s) 89
TaiI ACGT 2 cut(s) 198, 315
TaqI TCGA 2 cut(s) 29, 141
TasI AATT 4 cut(s) 216, 245, 298, 412
TauI GCSGC 1 cut(s) 331
TfiI GAWTC 1 cut(s) 204
TscAI CASTG 1 cut(s) 27
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 3 cut(s) 196, 225, 238
TspRI CASTG 1 cut(s) 27
Van91I CCANNNNNTGG 1 cut(s) 197
XapI RAATTY 2 cut(s) 216, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.