RchiOBHm_Chr3g0496141

28 kDa heat- and acid-stable

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000652
Physical Location & Seq
Reverse (-)
46722357 .. 46723420
1064 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45848

Sequence Viewer

Length: 171 bp
ATGGGCAGAGGAAAGTACAAGAACAAGCCCACTGGTCAGTACCAGTTCTCCAGTCGCGAAGATCTTCTTGCCGGTACCTCCACCCGTCCCCGTTCTTTTTCAAAGGTAACCCTCTGTCACACTGTTTTTGTGGTCACCGTGATGCAAATATCAATTTTTAGGTTTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP28

Protein Analysis

56

Amino Acids

6.43

Weight (kDa)

10.68

Isoelectric Point (pI)

20.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 74
AccII CGCG 1 cut(s) 57
AfaI GTAC 3 cut(s) 17, 41, 76
AgsI TTSAA 1 cut(s) 102
Asp700I GAANNNNTTC 1 cut(s) 63
Asp718I GGTACC 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 127
BanI GGYRCC 1 cut(s) 74
BglII AGATCT 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 76
BmsI GCATC 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 3 cut(s) 37, 43, 51
BseNI ACTGG 3 cut(s) 37, 43, 51
Bsh1236I CGCG 1 cut(s) 57
BshNI GGYRCC 1 cut(s) 74
BsiSI CCGG 1 cut(s) 72
BslFI GGGAC 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 61
Bsp68I TCGCGA 1 cut(s) 57
BspFNI CGCG 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 3 cut(s) 37, 43, 51
BssAI RCCGGY 1 cut(s) 71
BssMI GATC 1 cut(s) 61
Bst4CI ACNGT 2 cut(s) 124, 139
BstEII GGTNACC 2 cut(s) 106, 133
BstFNI CGCG 1 cut(s) 57
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstPI GGTNACC 2 cut(s) 106, 133
BstUI CGCG 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BtsIMutI CAGTG 2 cut(s) 30, 120
BtuMI TCGCGA 1 cut(s) 57
Cfr10I RCCGGY 1 cut(s) 71
Csp6I GTAC 3 cut(s) 16, 40, 75
CviJI RGCY 1 cut(s) 28
CviKI_1 RGCY 1 cut(s) 28
CviQI GTAC 3 cut(s) 16, 40, 75
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
Eco91I GGTNACC 2 cut(s) 106, 133
EcoO65I GGTNACC 2 cut(s) 106, 133
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FaqI GGGAC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 34
HapII CCGG 1 cut(s) 72
HpaII CCGG 1 cut(s) 72
HphI GGTGA 1 cut(s) 127
Hpy188III TCNNGA 1 cut(s) 56
HpyCH4III ACNGT 2 cut(s) 124, 139
HpyCH4V TGCA 1 cut(s) 145
KpnI GGTACC 1 cut(s) 78
Kzo9I GATC 1 cut(s) 61
LpnPI CCDG 4 cut(s) 18, 56, 64, 85
LweI GCATC 1 cut(s) 132
MaeIII GTNAC 3 cut(s) 106, 116, 133
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 2 cut(s) 56, 71
MflI RGATCY 1 cut(s) 61
MluCI AATT 1 cut(s) 153
MnlI CCTC 2 cut(s) 88, 122
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 1 cut(s) 165
MslI CAYNNNNRTG 1 cut(s) 140
MspI CCGG 1 cut(s) 72
MvnI CGCG 1 cut(s) 57
NdeII GATC 1 cut(s) 61
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 2 cut(s) 116, 133
NruI TCGCGA 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 63
PspEI GGTNACC 2 cut(s) 106, 133
PspN4I GGNNCC 1 cut(s) 76
PsuI RGATCY 1 cut(s) 61
RruI TCGCGA 1 cut(s) 57
RsaI GTAC 3 cut(s) 17, 41, 76
RsaNI GTAC 3 cut(s) 16, 40, 75
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 1 cut(s) 165
Sau3AI GATC 1 cut(s) 61
SetI ASST 3 cut(s) 80, 108, 164
SfaNI GCATC 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 140
Sse9I AATT 1 cut(s) 153
TaaI ACNGT 2 cut(s) 124, 139
TasI AATT 1 cut(s) 153
TatI WGTACW 1 cut(s) 15
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 2 cut(s) 37, 127
TseFI GTSAC 2 cut(s) 116, 133
Tsp45I GTSAC 2 cut(s) 116, 133
TspRI CASTG 2 cut(s) 37, 127
XmnI GAANNNNTTC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.