Rmu_sc0013772.1_g000009
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013772.1
OG0000652
Physical Location & Seq
Reverse (-)
23649 .. 24864
1216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013772.1_g000009.1.cds

Sequence Viewer

Length: 717 bp
atgatatttataggttcagatccgccttcttttggctatcagttaagacataggagaggaaaatcagaaactactcgtgctcagtacataaacacacaggatgtgaggctgacaataagcacttggaatgttgctggaggagttccggatgaaaaccttgatattgatgattggatttcttcaaaagagccatcggatatctacatgttcaatggaatggcagagctttcgatgactatagccaagcttccagtgttttataagcacagaaagctgctcttctttccaccatgggcatatgcccttccgacatggcttctcaagatccctctcacctgtgttgaagttggtgtttgggcaataccttctcctcctactcatgaatcaactggattattccgattcattgctggagcaggtagaagcttgactgttgctaatacatttggctcatttgcagtagtcatgctttcactttggggggctttgtcctgtcaagagaatgcaattgtagttaatgaattccttggcaagagttggtcacatgttcttccaaactcaaacgaatcattaggagttgaaattctgaaatctcatggatttcgtatgcatgcatattggtattggattggcgcaggagcattggctggatacatgctcttattcaacatttgttacactctggctctcacttatctaaaccgtgaagcaatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

238

Amino Acids

26.72

Weight (kDa)

7.01

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 261
Acc36I ACCTGC 1 cut(s) 407
AccIII TCCGGA 1 cut(s) 145
AciI CCGC 1 cut(s) 23
AclWI GGATC 2 cut(s) 14, 319
AcsI RAATTY 2 cut(s) 521, 582
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 32
AflIII ACRYGT 2 cut(s) 204, 544
AgsI TTSAA 5 cut(s) 183, 211, 344, 581, 667
AluBI AGCT 4 cut(s) 226, 247, 274, 426
AluI AGCT 4 cut(s) 226, 247, 274, 426
Alw21I GWGCWC 1 cut(s) 82
AlwI GGATC 2 cut(s) 14, 319
Aor13HI TCCGGA 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 274
ApoI RAATTY 2 cut(s) 521, 582
AspLEI GCGC 1 cut(s) 635
AsuHPI GGTGA 1 cut(s) 325
BauI CACGAG 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 1 cut(s) 261
BccI CCATC 1 cut(s) 199
BcgI CGANNNNNNTGC 2 cut(s) 210, 244
BciVI GTATCC 1 cut(s) 644
BfaI CTAG 1 cut(s) 715
BfmI CTRYAG 1 cut(s) 237
BfuAI ACCTGC 1 cut(s) 407
BfuI GTATCC 1 cut(s) 644
BisI GCNGC 1 cut(s) 275
BlsI GCNGC 1 cut(s) 276
BpmI CTGGAG 2 cut(s) 156, 432
BpuEI CTTGAG 1 cut(s) 305
BsaJI CCNNGG 2 cut(s) 290, 526
BsaWI WCCGGW 1 cut(s) 145
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse1I ACTGG 2 cut(s) 251, 394
Bse3DI GCAATG 1 cut(s) 405
BseAI TCCGGA 1 cut(s) 145
BseDI CCNNGG 2 cut(s) 290, 526
BseGI GGATG 2 cut(s) 106, 154
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMI GCAATG 1 cut(s) 405
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 2 cut(s) 251, 394
BseRI GAGGAG 2 cut(s) 153, 360
BseXI GCAGC 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 82
BsiSI CCGG 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 32
BsmI GAATGC 1 cut(s) 508
Bsp1286I GDGCHC 1 cut(s) 82
Bsp13I TCCGGA 1 cut(s) 145
Bsp143I GATC 2 cut(s) 19, 324
Bsp19I CCATGG 1 cut(s) 290
BspACI CCGC 1 cut(s) 23
BspCNI CTCAG 1 cut(s) 94
BspEI TCCGGA 1 cut(s) 145
BspHI TCATGA 1 cut(s) 379
BspMI ACCTGC 1 cut(s) 407
BspPI GGATC 2 cut(s) 14, 319
BspQI GCTCTTC 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 405
BsrI ACTGG 2 cut(s) 251, 394
BssECI CCNNGG 2 cut(s) 290, 526
BssMI GATC 2 cut(s) 19, 324
BssSI CACGAG 1 cut(s) 75
BssT1I CCWWGG 2 cut(s) 290, 526
Bst2BI CACGAG 1 cut(s) 75
Bst4CI ACNGT 2 cut(s) 433, 704
Bst6I CTCTTC 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 612
BstDEI CTNAG 1 cut(s) 81
BstDSI CCRYGG 1 cut(s) 290
BstF5I GGATG 2 cut(s) 106, 154
BstHHI GCGC 1 cut(s) 635
BstKTI GATC 2 cut(s) 22, 327
BstMBI GATC 2 cut(s) 19, 324
BstMWI GCNNNNNNNGC 1 cut(s) 271
BstNSI RCATGY 4 cut(s) 208, 548, 614, 658
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 261
BstX2I RGATCY 2 cut(s) 19, 324
BstYI RGATCY 2 cut(s) 19, 324
BsuI GTATCC 1 cut(s) 644
BtgI CCRYGG 1 cut(s) 290
BtsCI GGATG 2 cut(s) 106, 154
BtsIMutI CAGTG 1 cut(s) 258
BveI ACCTGC 1 cut(s) 407
Cac8I GCNNGC 1 cut(s) 612
CciI TCATGA 1 cut(s) 379
CfoI GCGC 1 cut(s) 635
Csp6I GTAC 1 cut(s) 85
CviAII CATG 9 cut(s) 205, 291, 312, 380, 466, 545, 596, 611, 655
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 1 cut(s) 81
DpnI GATC 2 cut(s) 21, 326
DpnII GATC 2 cut(s) 19, 324
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
EciI GGCGGA 1 cut(s) 12
Eco130I CCWWGG 2 cut(s) 290, 526
Eco32I GATATC 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 521
EcoRV GATATC 1 cut(s) 199
EcoT14I CCWWGG 2 cut(s) 290, 526
EcoT22I ATGCAT 2 cut(s) 612, 616
ErhI CCWWGG 2 cut(s) 290, 526
FaeI CATG 9 cut(s) 208, 294, 315, 383, 469, 548, 599, 614, 658
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FatI CATG 9 cut(s) 204, 290, 311, 379, 465, 544, 595, 610, 654
FauNDI CATATG 1 cut(s) 298
Fnu4HI GCNGC 1 cut(s) 275
FokI GGATG 2 cut(s) 113, 161
Fsp4HI GCNGC 1 cut(s) 275
FspBI CTAG 1 cut(s) 715
GlaI GCGC 1 cut(s) 634
GluI GCNGC 1 cut(s) 275
GsuI CTGGAG 2 cut(s) 156, 432
HapII CCGG 1 cut(s) 146
HhaI GCGC 1 cut(s) 635
Hin1II CATG 9 cut(s) 208, 294, 315, 383, 469, 548, 599, 614, 658
Hin6I GCGC 1 cut(s) 633
HinP1I GCGC 1 cut(s) 633
HindIII AAGCTT 2 cut(s) 245, 424
HinfI GANTC 3 cut(s) 383, 402, 566
HpaII CCGG 1 cut(s) 146
HphI GGTGA 1 cut(s) 325
Hpy188I TCNGA 6 cut(s) 19, 67, 196, 309, 401, 588
Hpy188III TCNNGA 4 cut(s) 146, 322, 380, 497
HpyAV CCTTC 3 cut(s) 36, 314, 375
HpyCH4III ACNGT 2 cut(s) 433, 704
HpyCH4V TGCA 4 cut(s) 458, 506, 610, 614
HpyF10VI GCNNNNNNNGC 1 cut(s) 271
HpyF3I CTNAG 1 cut(s) 81
Hsp92II CATG 9 cut(s) 208, 294, 315, 383, 469, 548, 599, 614, 658
HspAI GCGC 1 cut(s) 633
Kpn2I TCCGGA 1 cut(s) 145
Kzo9I GATC 2 cut(s) 19, 324
LguI GCTCTTC 1 cut(s) 284
LmnI GCTCC 2 cut(s) 413, 638
Lsp1109I GCAGC 1 cut(s) 261
MaeI CTAG 1 cut(s) 715
MaeIII GTNAC 2 cut(s) 540, 674
MalI GATC 2 cut(s) 21, 326
MboI GATC 2 cut(s) 19, 324
MboII GAAGA 3 cut(s) 171, 271, 542
MfeI CAATTG 1 cut(s) 507
MflI RGATCY 2 cut(s) 19, 324
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 3 cut(s) 507, 521, 582
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 5 cut(s) 50, 99, 131, 339, 381
Mph1103I ATGCAT 2 cut(s) 612, 616
MroI TCCGGA 1 cut(s) 145
MseI TTAA 2 cut(s) 44, 516
MspI CCGG 1 cut(s) 146
MunI CAATTG 1 cut(s) 507
Mva1269I GAATGC 1 cut(s) 508
MwoI GCNNNNNNNGC 1 cut(s) 271
NcoI CCATGG 1 cut(s) 290
NdeI CATATG 1 cut(s) 298
NdeII GATC 2 cut(s) 19, 324
NlaIII CATG 9 cut(s) 208, 294, 315, 383, 469, 548, 599, 614, 658
NmuCI GTSAC 1 cut(s) 540
NsiI ATGCAT 2 cut(s) 612, 616
NspI RCATGY 4 cut(s) 208, 548, 614, 658
PaeI GCATGC 1 cut(s) 614
PagI TCATGA 1 cut(s) 379
PciI ACATGT 2 cut(s) 204, 544
PciSI GCTCTTC 1 cut(s) 284
PctI GAATGC 1 cut(s) 508
PfeI GAWTC 3 cut(s) 383, 402, 566
PkrI GCNGC 1 cut(s) 276
PscI ACATGT 2 cut(s) 204, 544
PsiI TTATAA 1 cut(s) 261
PsuI RGATCY 2 cut(s) 19, 324
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SapI GCTCTTC 1 cut(s) 284
SaqAI TTAA 2 cut(s) 44, 516
SatI GCNGC 1 cut(s) 275
Sau3AI GATC 2 cut(s) 19, 324
SduI GDGCHC 1 cut(s) 82
SetI ASST 9 cut(s) 16, 159, 228, 249, 276, 338, 367, 421, 428
SfcI CTRYAG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SphI GCATGC 1 cut(s) 614
Sse9I AATT 3 cut(s) 507, 521, 582
SsiI CCGC 1 cut(s) 23
SspMI CTAG 1 cut(s) 715
StyI CCWWGG 2 cut(s) 290, 526
TaaI ACNGT 2 cut(s) 433, 704
TaqI TCGA 1 cut(s) 230
TasI AATT 3 cut(s) 507, 521, 582
TatI WGTACW 1 cut(s) 84
TfiI GAWTC 3 cut(s) 383, 402, 566
Tru1I TTAA 2 cut(s) 44, 516
Tru9I TTAA 2 cut(s) 44, 516
TscAI CASTG 1 cut(s) 258
TseFI GTSAC 1 cut(s) 540
TseI GCWGC 1 cut(s) 274
Tsp45I GTSAC 1 cut(s) 540
TspDTI ATGAA 4 cut(s) 165, 394, 396, 534
TspRI CASTG 1 cut(s) 258
XapI RAATTY 2 cut(s) 521, 582
XceI RCATGY 4 cut(s) 208, 548, 614, 658
XspI CTAG 1 cut(s) 715
Zsp2I ATGCAT 2 cut(s) 612, 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.