Rh3DG236500
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000652
Physical Location & Seq
Reverse (-)
22630705 .. 22649181
18477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG236500.1

Sequence Viewer

Length: 327 bp
ATGAGTACAACTGCTAATCATGTGTCAAGAATGTTGGTGGGCGGCATGAAGGTGGTTGGGATTTACATTTGGATTAGCGATAATGCATTCAAGAATTCAAACATTGTGCTTTGCCAGGCATTTGATACCCTGCTCCGGAAGCTACAAAGGTATGTCCCTCTTGGAGCATCTGTTGCTGATTGGTATGCAGGAGTAGGTGTTATCAGATTATCATTGGCTGCTACAAGAAAATGCAGGCAAGAATTTAAGATTTCTGTTTGGGACTTGTGGAAAGAAGACCGAGCCTTGGAAATCATCGACACATCTTTGGGTGAATCCTACCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cons_hypoth95 MTS

Protein Analysis

108

Amino Acids

12.17

Weight (kDa)

9.03

Isoelectric Point (pI)

26.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ODR4-like PF14778 3 - 44 2.6e-09 Odorant response abnormal 4-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 135
AciI CCGC 1 cut(s) 42
AcsI RAATTY 2 cut(s) 94, 242
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 2 cut(s) 135, 286
AgsI TTSAA 2 cut(s) 91, 99
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
Aor13HI TCCGGA 1 cut(s) 135
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 2 cut(s) 94, 242
AsuHPI GGTGA 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 205
BciT130I CCWGG 1 cut(s) 116
BisI GCNGC 2 cut(s) 43, 219
BlsI GCNGC 2 cut(s) 44, 220
Bme1390I CCNGG 1 cut(s) 116
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 1 cut(s) 176
BpiI GAAGAC 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 285
BsaWI WCCGGW 1 cut(s) 135
BsaXI ACNNNNNCTCC 4 cut(s) 156, 183, 186, 213
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 286
BseAI TCCGGA 1 cut(s) 135
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 285
BseLI CCNNNNNNNGG 2 cut(s) 135, 286
BseXI GCAGC 1 cut(s) 205
BsiSI CCGG 1 cut(s) 136
BslFI GGGAC 2 cut(s) 140, 275
BslI CCNNNNNNNGG 2 cut(s) 135, 286
BsmFI GGGAC 2 cut(s) 140, 275
BsmI GAATGC 1 cut(s) 86
Bsp13I TCCGGA 1 cut(s) 135
BspACI CCGC 1 cut(s) 42
BspEI TCCGGA 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 116
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 236
BstMWI GCNNNNNNNGC 2 cut(s) 139, 173
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 205
BstV2I GAAGAC 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 6
CviAII CATG 2 cut(s) 20, 46
CviJI RGCY 3 cut(s) 142, 218, 284
CviKI_1 RGCY 3 cut(s) 142, 218, 284
CviQI GTAC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 285
EcoRI GAATTC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 285
EcoT22I ATGCAT 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 2 cut(s) 23, 49
FaiI YATR 5 cut(s) 21, 47, 153, 186, 325
FaqI GGGAC 2 cut(s) 140, 275
FatI CATG 2 cut(s) 19, 45
Fnu4HI GCNGC 2 cut(s) 43, 219
Fsp4HI GCNGC 2 cut(s) 43, 219
GluI GCNGC 2 cut(s) 43, 219
HapII CCGG 1 cut(s) 136
Hin1II CATG 2 cut(s) 23, 49
HinfI GANTC 1 cut(s) 314
HpaII CCGG 1 cut(s) 136
HphI GGTGA 1 cut(s) 323
Hpy188I TCNGA 1 cut(s) 206
Hpy188III TCNNGA 3 cut(s) 27, 91, 136
HpyAV CCTTC 1 cut(s) 43
HpyCH4V TGCA 3 cut(s) 86, 188, 234
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 173
Hsp92II CATG 2 cut(s) 23, 49
Kpn2I TCCGGA 1 cut(s) 135
LmnI GCTCC 2 cut(s) 138, 164
LpnPI CCDG 6 cut(s) 101, 128, 143, 149, 174, 220
Lsp1109I GCAGC 1 cut(s) 205
LweI GCATC 1 cut(s) 176
MboII GAAGA 1 cut(s) 287
MluCI AATT 2 cut(s) 94, 242
MnlI CCTC 1 cut(s) 168
Mph1103I ATGCAT 1 cut(s) 88
MroI TCCGGA 1 cut(s) 135
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 1 cut(s) 50
MspI CCGG 1 cut(s) 136
MspR9I CCNGG 1 cut(s) 116
Mva1269I GAATGC 1 cut(s) 86
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 2 cut(s) 139, 173
NlaIII CATG 2 cut(s) 23, 49
NsiI ATGCAT 1 cut(s) 88
PctI GAATGC 1 cut(s) 86
PfeI GAWTC 1 cut(s) 314
PkrI GCNGC 2 cut(s) 44, 220
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 50
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 2 cut(s) 43, 219
ScrFI CCNGG 1 cut(s) 116
SetI ASST 4 cut(s) 54, 144, 152, 199
SfaNI GCATC 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 50
Sse9I AATT 2 cut(s) 94, 242
SsiI CCGC 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 285
TaqI TCGA 1 cut(s) 297
TaqII GACCGA 1 cut(s) 294
TasI AATT 2 cut(s) 94, 242
TatI WGTACW 1 cut(s) 5
TauI GCSGC 1 cut(s) 45
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TseI GCWGC 1 cut(s) 218
TspDTI ATGAA 1 cut(s) 62
XapI RAATTY 2 cut(s) 94, 242
Zsp2I ATGCAT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.