Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Reverse (-)

27560446 .. 27566533

Gene Structure 6088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0278100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1620 bp

ATGGGCTCTTTCACTTGGGTTGGGGAGTACAACGCCGCCGTCACCGCCACCGCCGATGTCGACGCCGCCTCCGCCGCCGCTCCGACGAGGAGGAGCAAGAGGCTTCACCGCCCCAAGAAGTTTGAGTTTCTCAGCTGGGGCTCGAGGCCGCTGATTGAATTTCTCGAGTCGATTGGGAAGGACACGACGAAGCAGATCTCCCAATACGACGTCGCTACGATTATCACCGACTACGTCAACCACCGCAGGCTTCTCCACCCGACGAAGAGGAAGAGGATCGTCTGCGACGAGGGGCTTCATATTCTGTTCGGCAGGAAGACCATTGCTCGGATCAAGATCTACGATCTGCTCCAGCCGCATTTCGCTGATAATCTCGAGGACGATTCCGATGATTCGTCGGATGAGTCCGACGACGACGGTGGTTTGGACGAGGAGGACGAGGATAAGCAGCAGCGGCGGCAGCTGCAGAGGAAGAAGCAGCTGAAGAGGAGAGCCGCCGCTGTCGCTCTGCATGCGCCTCCTCCGGTTCCGAAAAGCTGCTACGCCGCCGTGATTCCGGAGAATTTGAAGCTGGTGTACCTGAGGAGGTCGGTGGTGGAGGCTCTGCTGAAGCAGGACGAGGCTCAGGTGTTTGAGGACAAAGTCGTGGGGAGCTTTGTGAGGACGAAATCGGACCCCAATGACTATCTGCAGAAGAATTCTCACCAGCTAATGCAGGTGAAGGCGATTCTGAAGAAGCCGGAGCCGAATTCGGAATCGTCTGCTGGAGGTGGAGTTCTTCTTCAGCTTCATGGGGCTGTTAGAGACTTCTCCATTTCCGTGCTCTCTGATGATAACTTCTTCCCGGAAGAATGTGAGGATTTACGTGAAAGGGTTAAAGGTGGTTTGCTGAAGAGACCTACAGTGGTGGAGCTTCAACAAAAGGTCCAGATTTTGCATCTGGATGTAACAAAGCATTGGCTTGTGAGAGAACTTCAATACTTACAGAACTCAATTGATCGAGCGAATGAAAAGGGATTGCGCCGAGAGCTGTTTGACTACTTGGAAAGAAGGGAACTGCTGCAGTCTCCAGATGAACAAGCACGTCTTTTGCGAGAGGTTCCCGAAGTTATTGCAGAAGAATTAGAGGAAGAACCAAAAGATTCTCCAGATGAAACAGAACAAGGAAACCATGGCTTCCCAGGACATATCCTCAGGGGAGAATCAACTCCTATTTCTGAAGCATGCGAGGATGGTGATTCTTTGCAGAACCAACCTGCAGAGTCTGTAAAAGAGATACTTGATGCAGAGGACAACAAGGCTTCTCAGCAACTGGTGGATAAGCATATAGTGACATCTGAGATAGTGGATATAAGTGATGACGACGAAAGTGAAGAACCAGAATCTGAAGAAAAGTACGAGATTCCTATTCCCCAGCTGGGAACCTCTATGTGGCATTATTCCGATCCCCAGGGAAACATACAGGGTCCTTTCTCAATCATTTCCTTAAAGCGCTGGAGTGATTCTGACTACTTTCCTCCAGATTTCAAAATTTGGAAGACAGGTCAGAGTAGTAATGAAGCTGTATTATTGACCAAAATTCTTCGTGGGAATTTTCTAAATAAAAGTGTATACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

539

Amino Acids

61.33

Weight (kDa)

5.08

Isoelectric Point (pI)

66.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	49 - 121	1.9e-08	SWIB/MDM2 domain
Plus-3	PF03126	188 - 292	2.1e-13	Plus-3 domain
NERD_plant	PF25980	315 - 363	1.5e-22	Plant NERD domain
GYF	PF02213	478 - 518	2.4e-12	GYF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	706
AatII	GACGTC	1 cut(s)	213
Acc36I	ACCTGC	2 cut(s)	706, 1264
AccBSI	CCGCTC	1 cut(s)	80
AccI	GTMKAC	2 cut(s)	60, 1611
AccIII	TCCGGA	1 cut(s)	556
AclWI	GGATC	3 cut(s)	284, 338, 1439
AcsI	RAATTY	7 cut(s)	158, 562, 697, 748, 1530, 1578, 1591
AcuI	CTGAAG	7 cut(s)	503, 629, 752, 767, 911, 1239, 1407
AcyI	GRCGYC	2 cut(s)	63, 210
AfaI	GTAC	3 cut(s)	29, 578, 1397
AfeI	AGCGCT	1 cut(s)	1493
AfiI	CCNNNNNNNGG	3 cut(s)	327, 1418, 1431
AgsI	TTSAA	5 cut(s)	158, 568, 917, 977, 1528
AjiI	CACGTC	1 cut(s)	1085
AjnI	CCWGG	2 cut(s)	1180, 1449
AloI	GAACNNNNNNTCC	2 cut(s)	759, 791
Alw21I	GWGCWC	1 cut(s)	825
Alw26I	GTCTC	3 cut(s)	798, 889, 1071
AlwI	GGATC	3 cut(s)	284, 338, 1439
AlwNI	CAGNNNCTG	3 cut(s)	1265, 1312, 1385
Ama87I	CYCGRG	3 cut(s)	142, 164, 374
Aor13HI	TCCGGA	1 cut(s)	556
Aor51HI	AGCGCT	1 cut(s)	1493
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	7 cut(s)	448, 451, 460, 463, 478, 537, 1060
ApoI	RAATTY	7 cut(s)	158, 562, 697, 748, 1530, 1578, 1591
AspLEI	GCGC	3 cut(s)	517, 1023, 1494
AspS9I	GGNCC	3 cut(s)	673, 925, 1466
AsuC2I	CCSGG	1 cut(s)	845
AsuHPI	GGTGA	6 cut(s)	34, 98, 217, 695, 730, 1247
AvaI	CYCGRG	3 cut(s)	142, 164, 374
AvaII	GGWCC	3 cut(s)	673, 925, 1466
AxyI	CCTNAGG	2 cut(s)	581, 1193
BanII	GRGCYC	2 cut(s)	8, 143
BarI	GAAGNNNNNNTAC	2 cut(s)	560, 592
BbsI	GAAGAC	2 cut(s)	323, 1544
Bbv12I	GWGCWC	1 cut(s)	825
BbvI	GCAGC	7 cut(s)	450, 460, 463, 472, 490, 524, 1047
BccI	CCATC	1 cut(s)	1226
BceAI	ACGGC	2 cut(s)	23, 533
BcgI	CGANNNNNNTGC	2 cut(s)	1094, 1128
BciT130I	CCWGG	2 cut(s)	1182, 1451
BcnI	CCSGG	1 cut(s)	845
BcoDI	GTCTC	3 cut(s)	798, 889, 1071
BfmI	CTRYAG	5 cut(s)	464, 689, 900, 1061, 1257
BfoI	RGCGCY	1 cut(s)	1495
BfuAI	ACCTGC	2 cut(s)	706, 1264
BglII	AGATCT	2 cut(s)	195, 336
Bme1390I	CCNGG	3 cut(s)	845, 1182, 1451
Bme18I	GGWCC	3 cut(s)	673, 925, 1466
BmeT110I	CYCGRG	3 cut(s)	142, 164, 374
BmgBI	CACGTC	1 cut(s)	1085
BmgT120I	GGNCC	3 cut(s)	673, 925, 1466
BmiI	GGNNCC	6 cut(s)	528, 675, 744, 1101, 1423, 1467
BmrFI	CCNGG	3 cut(s)	845, 1182, 1451
BmsI	GCATC	2 cut(s)	946, 1273
BpiI	GAAGAC	2 cut(s)	323, 1544
BpmI	CTGGAG	6 cut(s)	335, 786, 1053, 1131, 1503, 1516
Bpu10I	CCTNAGC	1 cut(s)	624
BpuMI	CCSGG	1 cut(s)	845
BsaAI	YACGTR	1 cut(s)	866
BsaBI	GATNNNNATC	1 cut(s)	335
BsaHI	GRCGYC	2 cut(s)	63, 210
BsaI	GGTCTC	1 cut(s)	889
BsaJI	CCNNGG	4 cut(s)	1171, 1180, 1449, 1450
BsaWI	WCCGGW	2 cut(s)	523, 556
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 759, 789
Bsc4I	CCNNNNNNNGG	3 cut(s)	327, 1418, 1431
Bse1I	ACTGG	1 cut(s)	1317
Bse21I	CCTNAGG	2 cut(s)	581, 1193
Bse3DI	GCAATG	1 cut(s)	321
Bse8I	GATNNNNATC	1 cut(s)	335
BseAI	TCCGGA	1 cut(s)	556
BseBI	CCWGG	2 cut(s)	1182, 1451
BseDI	CCNNGG	4 cut(s)	1171, 1180, 1449, 1450
BseGI	GGATG	3 cut(s)	406, 949, 1237
BseJI	GATNNNNATC	1 cut(s)	335
BseLI	CCNNNNNNNGG	3 cut(s)	327, 1418, 1431
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	6 cut(s)	145, 572, 638, 1207, 1319, 1329
BseNI	ACTGG	1 cut(s)	1317
BseRI	GAGGAG	6 cut(s)	103, 106, 446, 502, 510, 598
BseXI	GCAGC	7 cut(s)	450, 460, 463, 472, 490, 524, 1047
BseYI	CCCAGC	3 cut(s)	135, 1413, 1417
BshFI	GGCC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	825
BsiHKCI	CYCGRG	3 cut(s)	142, 164, 374
BsiSI	CCGG	4 cut(s)	524, 557, 740, 845
BslI	CCNNNNNNNGG	3 cut(s)	327, 1418, 1431
BsmAI	GTCTC	3 cut(s)	798, 889, 1071
BsnI	GGCC	1 cut(s)	148
Bso31I	GGTCTC	1 cut(s)	889
BsoBI	CYCGRG	3 cut(s)	142, 164, 374
Bsp1286I	GDGCHC	3 cut(s)	8, 143, 825
Bsp13I	TCCGGA	1 cut(s)	556
Bsp143I	GATC	7 cut(s)	195, 276, 330, 336, 343, 997, 1444
Bsp19I	CCATGG	1 cut(s)	1171
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	6 cut(s)	144, 573, 637, 1206, 1318, 1330
BspEI	TCCGGA	1 cut(s)	556
BspLI	GGNNCC	6 cut(s)	528, 675, 744, 1101, 1423, 1467
BspMAI	CTGCAG	4 cut(s)	468, 693, 1065, 1261
BspMI	ACCTGC	2 cut(s)	706, 1264
BspPI	GGATC	3 cut(s)	284, 338, 1439
BspTNI	GGTCTC	1 cut(s)	889
BsrBI	CCGCTC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	1317
BssECI	CCNNGG	4 cut(s)	1171, 1180, 1449, 1450
BssMI	GATC	7 cut(s)	195, 276, 330, 336, 343, 997, 1444
BssNAI	GTATAC	1 cut(s)	1612
BssNI	GRCGYC	2 cut(s)	63, 210
BssT1I	CCWWGG	1 cut(s)	1171
Bst1107I	GTATAC	1 cut(s)	1612
Bst2UI	CCWGG	2 cut(s)	1182, 1451
Bst4CI	ACNGT	2 cut(s)	419, 904
Bst6I	CTCTTC	4 cut(s)	260, 266, 479, 887
BstACI	GRCGYC	2 cut(s)	63, 210
BstBAI	YACGTR	1 cut(s)	866
BstC8I	GCNNGC	3 cut(s)	248, 513, 1225
BstDEI	CTNAG	6 cut(s)	131, 581, 624, 1193, 1305, 1338
BstDSI	CCRYGG	1 cut(s)	1171
BstF5I	GGATG	3 cut(s)	406, 949, 1237
BstH2I	RGCGCY	1 cut(s)	1495
BstHHI	GCGC	3 cut(s)	517, 1023, 1494
BstKTI	GATC	7 cut(s)	198, 279, 333, 339, 346, 1000, 1447
BstMAI	GTCTC	3 cut(s)	798, 889, 1071
BstMBI	GATC	7 cut(s)	195, 276, 330, 336, 343, 997, 1444
BstNI	CCWGG	2 cut(s)	1182, 1451
BstNSI	RCATGY	2 cut(s)	515, 1227
BstSCI	CCNGG	3 cut(s)	843, 1180, 1449
BstSFI	CTRYAG	5 cut(s)	464, 689, 900, 1061, 1257
BstV1I	GCAGC	7 cut(s)	450, 460, 463, 472, 490, 524, 1047
BstV2I	GAAGAC	2 cut(s)	323, 1544
BstX2I	RGATCY	2 cut(s)	195, 336
BstYI	RGATCY	2 cut(s)	195, 336
BstZ17I	GTATAC	1 cut(s)	1612
Bsu36I	CCTNAGG	2 cut(s)	581, 1193
BsuRI	GGCC	1 cut(s)	148
BtgI	CCRYGG	1 cut(s)	1171
BtrI	CACGTC	1 cut(s)	1085
BtsCI	GGATG	3 cut(s)	406, 949, 1237
BtsIMutI	CAGTG	1 cut(s)	909
BveI	ACCTGC	2 cut(s)	706, 1264
Cac8I	GCNNGC	3 cut(s)	248, 513, 1225
CaiI	CAGNNNCTG	3 cut(s)	1265, 1312, 1385
CfoI	GCGC	3 cut(s)	517, 1023, 1494
Cfr13I	GGNCC	3 cut(s)	673, 925, 1466
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	3 cut(s)	28, 577, 1396
CviAII	CATG	4 cut(s)	512, 791, 1172, 1224
CviQI	GTAC	3 cut(s)	28, 577, 1396
DdeI	CTNAG	6 cut(s)	131, 581, 624, 1193, 1305, 1338
DpnI	GATC	7 cut(s)	197, 278, 332, 338, 345, 999, 1446
DpnII	GATC	7 cut(s)	195, 276, 330, 336, 343, 997, 1444
Eam1104I	CTCTTC	4 cut(s)	260, 266, 479, 887
EarI	CTCTTC	4 cut(s)	260, 266, 479, 887
EciI	GGCGGA	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	1171
Eco24I	GRGCYC	2 cut(s)	8, 143
Eco31I	GGTCTC	1 cut(s)	889
Eco47I	GGWCC	3 cut(s)	673, 925, 1466
Eco47III	AGCGCT	1 cut(s)	1493
Eco57I	CTGAAG	7 cut(s)	503, 629, 752, 767, 911, 1239, 1407
Eco81I	CCTNAGG	2 cut(s)	581, 1193
Eco88I	CYCGRG	3 cut(s)	142, 164, 374
EcoO109I	RGGNCCY	1 cut(s)	1466
EcoRI	GAATTC	2 cut(s)	697, 748
EcoRII	CCWGG	2 cut(s)	1180, 1449
EcoT14I	CCWWGG	1 cut(s)	1171
EcoT38I	GRGCYC	2 cut(s)	8, 143
ErhI	CCWWGG	1 cut(s)	1171
FaeI	CATG	4 cut(s)	515, 794, 1175, 1227
FalI	AAGNNNNNCTT	4 cut(s)	1071, 1103, 1263, 1295
FatI	CATG	4 cut(s)	511, 790, 1171, 1223
FblI	GTMKAC	2 cut(s)	60, 1611
FokI	GGATG	3 cut(s)	413, 956, 1244
FriOI	GRGCYC	2 cut(s)	8, 143
GlaI	GCGC	3 cut(s)	516, 1022, 1493
GsaI	CCCAGC	3 cut(s)	139, 1417, 1421
GsuI	CTGGAG	6 cut(s)	335, 786, 1053, 1131, 1503, 1516
HaeII	RGCGCY	1 cut(s)	1495
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	4 cut(s)	524, 557, 740, 845
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	3 cut(s)	517, 1023, 1494
Hin1I	GRCGYC	2 cut(s)	63, 210
Hin1II	CATG	4 cut(s)	515, 794, 1175, 1227
Hin6I	GCGC	3 cut(s)	515, 1021, 1492
HinP1I	GCGC	3 cut(s)	515, 1021, 1492
HincII	GTYRAC	2 cut(s)	61, 238
HindII	GTYRAC	2 cut(s)	61, 238
HpaII	CCGG	4 cut(s)	524, 557, 740, 845
HphI	GGTGA	6 cut(s)	34, 98, 217, 695, 730, 1247
Hpy166II	GTNNAC	4 cut(s)	61, 238, 577, 1612
Hpy8I	GTNNAC	4 cut(s)	61, 238, 577, 1612
HpyAV	CCTTC	3 cut(s)	172, 715, 1044
HpyCH4III	ACNGT	2 cut(s)	419, 904
HpyCH4IV	ACGT	4 cut(s)	210, 234, 865, 1084
HpyF3I	CTNAG	6 cut(s)	131, 581, 624, 1193, 1305, 1338
HpySE526I	ACGT	4 cut(s)	210, 234, 865, 1084
Hsp92I	GRCGYC	2 cut(s)	63, 210
Hsp92II	CATG	4 cut(s)	515, 794, 1175, 1227
HspAI	GCGC	3 cut(s)	515, 1021, 1492
Kpn2I	TCCGGA	1 cut(s)	556
Kzo9I	GATC	7 cut(s)	195, 276, 330, 336, 343, 997, 1444
LmnI	GCTCC	6 cut(s)	85, 93, 354, 651, 742, 910
Lsp1109I	GCAGC	7 cut(s)	450, 460, 463, 472, 490, 524, 1047
LweI	GCATC	2 cut(s)	946, 1273
MaeII	ACGT	4 cut(s)	210, 234, 865, 1084
MaeIII	GTNAC	3 cut(s)	40, 946, 1330
MalI	GATC	7 cut(s)	197, 278, 332, 338, 345, 999, 1446
MbiI	CCGCTC	1 cut(s)	80
MboI	GATC	7 cut(s)	195, 276, 330, 336, 343, 997, 1444
MfeI	CAATTG	1 cut(s)	993
MflI	RGATCY	2 cut(s)	195, 336
MhlI	GDGCHC	3 cut(s)	8, 143, 825
MluCI	AATT	9 cut(s)	158, 562, 697, 748, 993, 1121, 1530, 1578, 1591
MlyI	GAGTC	3 cut(s)	176, 413, 1271
MmeI	TCCRAC	3 cut(s)	107, 378, 432
MroI	TCCGGA	1 cut(s)	556
MseI	TTAA	2 cut(s)	876, 1487
MslI	CAYNNNNRTG	2 cut(s)	818, 942
MspA1I	CMGCKG	7 cut(s)	135, 151, 454, 463, 481, 500, 1417
MspI	CCGG	4 cut(s)	524, 557, 740, 845
MspR9I	CCNGG	3 cut(s)	845, 1182, 1451
MunI	CAATTG	1 cut(s)	993
MvaI	CCWGG	2 cut(s)	1182, 1451
NciI	CCSGG	1 cut(s)	845
NcoI	CCATGG	1 cut(s)	1171
NdeII	GATC	7 cut(s)	195, 276, 330, 336, 343, 997, 1444
NlaIII	CATG	4 cut(s)	515, 794, 1175, 1227
NlaIV	GGNNCC	6 cut(s)	528, 675, 744, 1101, 1423, 1467
NmeAIII	GCCGAG	1 cut(s)	1049
NmuCI	GTSAC	2 cut(s)	40, 1330
NspI	RCATGY	2 cut(s)	515, 1227
PaeI	GCATGC	2 cut(s)	515, 1227
PaeR7I	CTCGAG	3 cut(s)	142, 164, 374
PaqCI	CACCTGC	1 cut(s)	706
PasI	CCCWGGG	1 cut(s)	1450
PcsI	WCGNNNNNNNCGW	3 cut(s)	285, 435, 1090
PflFI	GACNNNGTC	2 cut(s)	233, 641
PfoI	TCCNGGA	1 cut(s)	843
PleI	GAGTC	3 cut(s)	175, 412, 1270
PpsI	GAGTC	3 cut(s)	175, 412, 1270
Ppu21I	YACGTR	1 cut(s)	866
PpuMI	RGGWCCY	1 cut(s)	1466
Psp5II	RGGWCCY	1 cut(s)	1466
Psp6I	CCWGG	2 cut(s)	1180, 1449
PspFI	CCCAGC	3 cut(s)	135, 1413, 1417
PspGI	CCWGG	2 cut(s)	1180, 1449
PspN4I	GGNNCC	6 cut(s)	528, 675, 744, 1101, 1423, 1467
PspPI	GGNCC	3 cut(s)	673, 925, 1466
PspPPI	RGGWCCY	1 cut(s)	1466
PspXI	VCTCGAGB	1 cut(s)	142
PstI	CTGCAG	4 cut(s)	468, 693, 1065, 1261
PstNI	CAGNNNCTG	3 cut(s)	1265, 1312, 1385
PsuI	RGATCY	2 cut(s)	195, 336
PsyI	GACNNNGTC	2 cut(s)	233, 641
PvuII	CAGCTG	4 cut(s)	135, 463, 481, 1417
RsaI	GTAC	3 cut(s)	29, 578, 1397
RsaNI	GTAC	3 cut(s)	28, 577, 1396
RseI	CAYNNNNRTG	2 cut(s)	818, 942
SalI	GTCGAC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	876, 1487
Sau3AI	GATC	7 cut(s)	195, 276, 330, 336, 343, 997, 1444
Sau96I	GGNCC	3 cut(s)	673, 925, 1466
SchI	GAGTC	3 cut(s)	176, 413, 1271
ScrFI	CCNGG	3 cut(s)	845, 1182, 1451
SduI	GDGCHC	3 cut(s)	8, 143, 825
SfaNI	GCATC	2 cut(s)	946, 1273
SfcI	CTRYAG	5 cut(s)	464, 689, 900, 1061, 1257
Sfr274I	CTCGAG	3 cut(s)	142, 164, 374
SinI	GGWCC	3 cut(s)	673, 925, 1466
SlaI	CTCGAG	3 cut(s)	142, 164, 374
SmiMI	CAYNNNNRTG	2 cut(s)	818, 942
SmlI	CTYRAG	3 cut(s)	142, 164, 374
SmoI	CTYRAG	3 cut(s)	142, 164, 374
SphI	GCATGC	2 cut(s)	515, 1227
Sse9I	AATT	9 cut(s)	158, 562, 697, 748, 993, 1121, 1530, 1578, 1591
StyD4I	CCNGG	3 cut(s)	843, 1180, 1449
StyI	CCWWGG	1 cut(s)	1171
TaaI	ACNGT	2 cut(s)	419, 904
TaiI	ACGT	4 cut(s)	213, 237, 868, 1087
TaqI	TCGA	6 cut(s)	60, 143, 165, 170, 375, 1000
TasI	AATT	9 cut(s)	158, 562, 697, 748, 993, 1121, 1530, 1578, 1591
TatI	WGTACW	1 cut(s)	27
Tru1I	TTAA	2 cut(s)	876, 1487
Tru9I	TTAA	2 cut(s)	876, 1487
TscAI	CASTG	1 cut(s)	909
TseFI	GTSAC	2 cut(s)	40, 1330
TseI	GCWGC	7 cut(s)	448, 451, 460, 463, 478, 537, 1060
Tsp45I	GTSAC	2 cut(s)	40, 1330
TspDTI	ATGAA	6 cut(s)	287, 779, 1023, 1089, 1167, 1572
TspGWI	ACGGA	1 cut(s)	808
TspRI	CASTG	1 cut(s)	909
Tth111I	GACNNNGTC	2 cut(s)	233, 641
VpaK11BI	GGWCC	3 cut(s)	673, 925, 1466
XapI	RAATTY	7 cut(s)	158, 562, 697, 748, 1530, 1578, 1591
XceI	RCATGY	2 cut(s)	515, 1227
XhoI	CTCGAG	3 cut(s)	142, 164, 374
XmiI	GTMKAC	2 cut(s)	60, 1611
ZraI	GACGTC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.