Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000553

Physical Location & Seq

Genomic Coordinates Reverse (-)

32938409 .. 32945315

Gene Structure 6907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0321000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGTCAATTCTATTGGTTCAAACGCCAAGAGTTGGAATTCCCACCTAAAAATAAAATGCTGGAATATTCAGGTGTCTGTACTGTCAGATCCGAAGAATAGATCATTCTACTGCAGTCTCTTCATTGTACTTTCATTGATTTCCGGTGCTTATTTCATTGGTAGTGCGTCCATTTCTCAGGAGTACAAGGAAAAATTAACTAGATGGAAAGTTATCTACAATATGCAGAATACAAATCTTGGTACTTGCAAGAAACGGTGCCAGCCGTCAGGGACTGAGGCATTACCGGAAGGAATTGTTGTCAAAACATCGGACTTGGAAATGCGGCCTTTATGGGGCTCCTCTATGAAAAATAAAAACTCAACGCCTTCAATGAGCTTGCTGGCTATTGCAGTTGGAATAAAACAGAAAGAAATAGTGGACAAAATTGTTAGGAAGTTTCTATCAAGTGATTTTGTGGTAATGCTTTTCCATTATGATGGTGCTGTGGATAAATGGAGGGACTTACCTTGGAGTGATACTGCCATACATGTATCTGTGATGAACCAAACAAAATGGTGGTTCGCAAAACGTTTCTTGCATCCAGATATAGTGACTGAATATAAATATATTTTTCTCTGGGATGAGGACCTCGGAGTTGAGAATTTTGATCCAGAACGATATCTATCAATTATTCGGGAAGAGGGACTTGAAATATCACAGCCAGCACTTGATCCTGTCAAATCGGAGGTGTATCATCCAATCACTGCACGTGCAAAGAAATCAAAAGTGCACAGAAGGTTTTATAAGTTCAAAGGCAGTGGAAGGTGCGATGATCAAAGCTCTGGTCCTCCATGTATAGGTTGGGTGGAAATGATGGCACCTGTATTCTCAAGTGCGGCTTGGCAATGTGTATGGTACATGATTCAGAATGACTTGATCCATGCATGGGGACTGGATGTGCAGCTTGGTTACTGTGCACAAGGGGATCGAATGAAAAATGTTGGTGTGGTTGACTCGGAATATATAGTTCATCTTGGTCTTCCTACACTTGGTGTCGCAGATGACAATAAGGGTATCAATGGCATGGCTCATTCTCACAAAGAGGGCTCAAAAGCATTGGCACCGTCTGGCCTCCCTCAAGCCAGTAATAGAGCTAAAGTTAGGATGCAGTCCTTCATTGACATGCGGATCTTTAAGGAAAGATGGAGGAATGCAGTCAAGGAGGATAAATGTTGGGTTGACCCATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

410

Amino Acids

46.73

Weight (kDa)

9.01

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF707	PF05212	87 - 402	4.4e-146	Protein of unknown function (DUF707)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22340 AT1G22360 AT1G22360 AT1G22370 AT1G22370 AT1G22380 AT1G22400 AT1G78270
fragaria_vesca	FvH4_5g36970 FvH4_5g36972 FvH4_5g36980 FvH4_5g37000 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020
malus_domestica	MD08G1185000.v1.1 MD08G1185500.v1.1 MD08G1185600.v1.1 MD08G1185700.v1.1 MD15G1371800.v1.1
prunus_persica	Prupe.1G519500_v2.0.a1 Prupe.1G519600_v2.0.a1 Prupe.1G519700_v2.0.a1 Prupe.1G519800_v2.0.a1 Prupe.1G519900_v2.0.a1 Prupe.1G520000_v2.0.a1 Prupe.1G520100_v2.0.a1 Prupe.1G520200_v2.0.a1 Prupe.1G520300_v2.0.a1 Prupe.1G520400_v2.0.a1 Prupe.1G520400_v2.0.a1
pyrus_communis	pycom08g15890 pycom08g15930 pycom15g33310
rosa_chinensis	RchiOBHm_Chr7g0231031 RchiOBHm_Chr7g0231091 RchiOBHm_Chr7g0243731 RchiOBHm_Chr7g0243761 RchiOBHm_Chr7g0243781 RchiOBHm_Chr7g0243791 RchiOBHm_Chr7g0243821
rosa_laevigata	RLG00000000832 RLG00000000834 RLG00000000835 RLG00000000836 RLG00000000837 RLG00000000838 RLG00000001435 RLG00000001436 RLG00000001650
rosa_multiflora	Rmu_co8142950.1_g000001 Rmu_sc0000780.1_g000001 Rmu_sc0000780.1_g000003 Rmu_sc0000780.1_g000006 Rmu_sc0000780.1_g000007 Rmu_sc0012403.1_g000014
rosa_roxburghii	Rroxscaffold_3G00221740 Rroxscaffold_3G00221770 Rroxscaffold_3G00221810 Rroxscaffold_3G00221820
rosa_rugosa	Rorug07G0264200 Rorug07G0264400 Rorug07G0321000 Rorug07G0321300 Rorug07G0321600 Rorug07G0321700 Rorug07G0321800
rosa_samantha	Rh7CG437000 Rh7CG437300 Rh7CG493400 Rh7CG493800 Rh7CG494000 Rh7CG494500
rosa_wichuraiana	Rw7G034550 Rw7G039670 Rw7G039680 Rw7G039690 Rw7G039700 Rw7G039740 Rw7G039750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	786
AccB1I	GGYRCC	3 cut(s)	258, 859, 1102
AccB7I	CCANNNNNTGG	1 cut(s)	33
AciI	CCGC	3 cut(s)	325, 878, 1168
AclI	AACGTT	1 cut(s)	571
AclWI	GGATC	6 cut(s)	83, 644, 707, 913, 975, 1178
AcsI	RAATTY	2 cut(s)	37, 643
AcvI	CACGTG	1 cut(s)	752
AdeI	CACNNNGTG	1 cut(s)	1034
AfaI	GTAC	5 cut(s)	81, 129, 185, 244, 899
AfiI	CCNNNNNNNGG	5 cut(s)	33, 335, 839, 928, 1031
AflIII	ACRYGT	1 cut(s)	529
AgsI	TTSAA	4 cut(s)	21, 372, 692, 793
AluBI	AGCT	4 cut(s)	378, 822, 946, 1136
AluI	AGCT	4 cut(s)	378, 822, 946, 1136
Alw21I	GWGCWC	2 cut(s)	774, 961
Alw26I	GTCTC	1 cut(s)	122
Alw44I	GTGCAC	2 cut(s)	770, 957
AlwI	GGATC	6 cut(s)	83, 644, 707, 913, 975, 1178
AlwNI	CAGNNNCTG	1 cut(s)	275
AoxI	GGCC	2 cut(s)	326, 1111
ApaLI	GTGCAC	2 cut(s)	770, 957
ApeKI	GCWGC	1 cut(s)	943
ApoI	RAATTY	2 cut(s)	37, 643
ArsI	GACNNNNNNTTYG	2 cut(s)	811, 843
AspS9I	GGNCC	2 cut(s)	628, 827
AvaII	GGWCC	2 cut(s)	628, 827
BaeGI	GKGCMC	2 cut(s)	774, 961
BanI	GGYRCC	3 cut(s)	258, 859, 1102
BanII	GRGCYC	2 cut(s)	341, 1091
BbrPI	CACGTG	1 cut(s)	752
BbsI	GAAGAC	1 cut(s)	1013
Bbv12I	GWGCWC	2 cut(s)	774, 961
BbvI	GCAGC	1 cut(s)	955
BccI	CCATC	4 cut(s)	198, 473, 850, 1179
BceAI	ACGGC	1 cut(s)	250
BclI	TGATCA	1 cut(s)	814
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	112
BisI	GCNGC	3 cut(s)	326, 879, 944
BlsI	GCNGC	3 cut(s)	327, 880, 945
Bme18I	GGWCC	2 cut(s)	628, 827
BmgT120I	GGNCC	2 cut(s)	628, 827
BmiI	GGNNCC	4 cut(s)	260, 340, 861, 1104
BmsI	GCATC	2 cut(s)	589, 1137
BpiI	GAAGAC	1 cut(s)	1013
BpuEI	CTTGAG	2 cut(s)	856, 1104
BsaAI	YACGTR	1 cut(s)	752
BsaBI	GATNNNNATC	1 cut(s)	664
BsaJI	CCNNGG	2 cut(s)	509, 631
BsaWI	WCCGGW	2 cut(s)	143, 286
Bsc4I	CCNNNNNNNGG	5 cut(s)	33, 335, 839, 928, 1031
Bse1I	ACTGG	2 cut(s)	939, 1125
Bse3DI	GCAATG	1 cut(s)	893
Bse8I	GATNNNNATC	1 cut(s)	664
BseDI	CCNNGG	2 cut(s)	509, 631
BseGI	GGATG	5 cut(s)	580, 628, 736, 943, 1152
BseJI	GATNNNNATC	1 cut(s)	664
BseLI	CCNNNNNNNGG	5 cut(s)	33, 335, 839, 928, 1031
BseMI	GCAATG	1 cut(s)	893
BseMII	CTCAG	2 cut(s)	191, 267
BseNI	ACTGG	2 cut(s)	939, 1125
BseRI	GAGGAG	1 cut(s)	331
BseSI	GKGCMC	2 cut(s)	774, 961
BseXI	GCAGC	1 cut(s)	955
BsgI	GTGCAG	2 cut(s)	732, 962
BshFI	GGCC	2 cut(s)	328, 1113
BshNI	GGYRCC	3 cut(s)	258, 859, 1102
BsiHKAI	GWGCWC	2 cut(s)	774, 961
BsiSI	CCGG	2 cut(s)	144, 287
BslFI	GGGAC	4 cut(s)	286, 515, 699, 945
BslI	CCNNNNNNNGG	5 cut(s)	33, 335, 839, 928, 1031
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	4 cut(s)	286, 515, 699, 945
BsmI	GAATGC	1 cut(s)	1198
BsnI	GGCC	2 cut(s)	328, 1113
Bsp1286I	GDGCHC	4 cut(s)	341, 774, 961, 1091
Bsp143I	GATC	8 cut(s)	88, 101, 649, 712, 814, 918, 967, 1170
BspACI	CCGC	3 cut(s)	325, 878, 1168
BspANI	GGCC	2 cut(s)	328, 1113
BspCNI	CTCAG	2 cut(s)	190, 268
BspLI	GGNNCC	4 cut(s)	260, 340, 861, 1104
BspMAI	CTGCAG	1 cut(s)	116
BspPI	GGATC	6 cut(s)	83, 644, 707, 913, 975, 1178
BspT107I	GGYRCC	3 cut(s)	258, 859, 1102
BsrDI	GCAATG	1 cut(s)	893
BsrI	ACTGG	2 cut(s)	939, 1125
BssECI	CCNNGG	2 cut(s)	509, 631
BssMI	GATC	8 cut(s)	88, 101, 649, 712, 814, 918, 967, 1170
BssT1I	CCWWGG	1 cut(s)	509
Bst4CI	ACNGT	4 cut(s)	84, 258, 956, 1107
Bst6I	CTCTTC	2 cut(s)	125, 675
BstBAI	YACGTR	1 cut(s)	752
BstC8I	GCNNGC	4 cut(s)	263, 380, 384, 705
BstDEI	CTNAG	2 cut(s)	177, 276
BstF5I	GGATG	5 cut(s)	580, 628, 736, 943, 1152
BstKTI	GATC	8 cut(s)	91, 104, 652, 715, 817, 921, 970, 1173
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	8 cut(s)	88, 101, 649, 712, 814, 918, 967, 1170
BstNSI	RCATGY	2 cut(s)	533, 1168
BstSFI	CTRYAG	1 cut(s)	112
BstSLI	GKGCMC	2 cut(s)	774, 961
BstV1I	GCAGC	1 cut(s)	955
BstV2I	GAAGAC	1 cut(s)	1013
BstX2I	RGATCY	2 cut(s)	88, 1170
BstXI	CCANNNNNNTGG	1 cut(s)	479
BstYI	RGATCY	2 cut(s)	88, 1170
BsuRI	GGCC	2 cut(s)	328, 1113
BtgZI	GCGATG	1 cut(s)	825
BtsCI	GGATG	5 cut(s)	580, 628, 736, 943, 1152
BtsI	GCAGTG	2 cut(s)	744, 805
BtsIMutI	CAGTG	2 cut(s)	744, 805
Cac8I	GCNNGC	4 cut(s)	263, 380, 384, 705
CaiI	CAGNNNCTG	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	628, 827
CseI	GACGC	1 cut(s)	156
Csp6I	GTAC	5 cut(s)	80, 128, 184, 243, 898
CspCI	CAANNNNNGTGG	2 cut(s)	781, 816
CviAII	CATG	7 cut(s)	530, 834, 901, 923, 927, 1066, 1165
CviQI	GTAC	5 cut(s)	80, 128, 184, 243, 898
DdeI	CTNAG	2 cut(s)	177, 276
DpnI	GATC	8 cut(s)	90, 103, 651, 714, 816, 920, 969, 1172
DpnII	GATC	8 cut(s)	88, 101, 649, 712, 814, 918, 967, 1170
DraIII	CACNNNGTG	1 cut(s)	1034
Eam1104I	CTCTTC	2 cut(s)	125, 675
EarI	CTCTTC	2 cut(s)	125, 675
Eco130I	CCWWGG	1 cut(s)	509
Eco24I	GRGCYC	2 cut(s)	341, 1091
Eco32I	GATATC	1 cut(s)	662
Eco47I	GGWCC	2 cut(s)	628, 827
Eco72I	CACGTG	1 cut(s)	752
EcoO109I	RGGNCCY	1 cut(s)	628
EcoRI	GAATTC	1 cut(s)	37
EcoRV	GATATC	1 cut(s)	662
EcoT14I	CCWWGG	1 cut(s)	509
EcoT22I	ATGCAT	1 cut(s)	928
EcoT38I	GRGCYC	2 cut(s)	341, 1091
ErhI	CCWWGG	1 cut(s)	509
FaeI	CATG	7 cut(s)	533, 837, 904, 926, 930, 1069, 1168
FalI	AAGNNNNNCTT	4 cut(s)	672, 704, 865, 897
FaqI	GGGAC	4 cut(s)	286, 515, 699, 945
FatI	CATG	7 cut(s)	529, 833, 900, 922, 926, 1065, 1164
FbaI	TGATCA	1 cut(s)	814
Fnu4HI	GCNGC	3 cut(s)	326, 879, 944
FokI	GGATG	5 cut(s)	567, 635, 723, 950, 1159
FriOI	GRGCYC	2 cut(s)	341, 1091
Fsp4HI	GCNGC	3 cut(s)	326, 879, 944
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	3 cut(s)	326, 879, 944
HaeIII	GGCC	2 cut(s)	328, 1113
HapII	CCGG	2 cut(s)	144, 287
HgaI	GACGC	1 cut(s)	156
Hin1II	CATG	7 cut(s)	533, 837, 904, 926, 930, 1069, 1168
HincII	GTYRAC	2 cut(s)	994, 1222
HindII	GTYRAC	2 cut(s)	994, 1222
HinfI	GANTC	2 cut(s)	904, 995
HpaII	CCGG	2 cut(s)	144, 287
Hpy166II	GTNNAC	5 cut(s)	421, 772, 959, 994, 1222
Hpy188I	TCNGA	7 cut(s)	88, 93, 313, 635, 727, 909, 1000
Hpy188III	TCNNGA	4 cut(s)	179, 584, 653, 677
Hpy8I	GTNNAC	5 cut(s)	421, 772, 959, 994, 1222
HpyAV	CCTTC	5 cut(s)	284, 378, 771, 798, 1165
HpyCH4III	ACNGT	4 cut(s)	84, 258, 956, 1107
HpyCH4IV	ACGT	2 cut(s)	571, 751
HpyF3I	CTNAG	2 cut(s)	177, 276
HpySE526I	ACGT	2 cut(s)	571, 751
Hsp92II	CATG	7 cut(s)	533, 837, 904, 926, 930, 1069, 1168
Ksp22I	TGATCA	1 cut(s)	814
Kzo9I	GATC	8 cut(s)	88, 101, 649, 712, 814, 918, 967, 1170
LmnI	GCTCC	1 cut(s)	344
Lsp1109I	GCAGC	1 cut(s)	955
LweI	GCATC	2 cut(s)	589, 1137
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	2 cut(s)	571, 751
MaeIII	GTNAC	2 cut(s)	592, 950
MalI	GATC	8 cut(s)	90, 103, 651, 714, 816, 920, 969, 1172
MboI	GATC	8 cut(s)	88, 101, 649, 712, 814, 918, 967, 1170
MboII	GAAGA	4 cut(s)	106, 112, 692, 1013
MflI	RGATCY	2 cut(s)	88, 1170
MhlI	GDGCHC	4 cut(s)	341, 774, 961, 1091
MluCI	AATT	7 cut(s)	7, 37, 194, 294, 426, 643, 669
MlyI	GAGTC	1 cut(s)	989
MmeI	TCCRAC	2 cut(s)	14, 376
Mph1103I	ATGCAT	1 cut(s)	928
MseI	TTAA	3 cut(s)	197, 1176, 1231
MslI	CAYNNNNRTG	2 cut(s)	477, 1163
MspI	CCGG	2 cut(s)	144, 287
Mva1269I	GAATGC	1 cut(s)	1198
NdeII	GATC	8 cut(s)	88, 101, 649, 712, 814, 918, 967, 1170
NlaIII	CATG	7 cut(s)	533, 837, 904, 926, 930, 1069, 1168
NlaIV	GGNNCC	4 cut(s)	260, 340, 861, 1104
NmuCI	GTSAC	1 cut(s)	592
NsiI	ATGCAT	1 cut(s)	928
NspI	RCATGY	2 cut(s)	533, 1168
PciI	ACATGT	1 cut(s)	529
PctI	GAATGC	1 cut(s)	1198
PfeI	GAWTC	1 cut(s)	904
PflMI	CCANNNNNTGG	1 cut(s)	33
PkrI	GCNGC	3 cut(s)	327, 880, 945
PleI	GAGTC	1 cut(s)	989
PmaCI	CACGTG	1 cut(s)	752
PmlI	CACGTG	1 cut(s)	752
PpsI	GAGTC	1 cut(s)	989
Ppu21I	YACGTR	1 cut(s)	752
PpuMI	RGGWCCY	1 cut(s)	628
PscI	ACATGT	1 cut(s)	529
PsiI	TTATAA	1 cut(s)	786
Psp1406I	AACGTT	1 cut(s)	571
Psp5II	RGGWCCY	1 cut(s)	628
PspCI	CACGTG	1 cut(s)	752
PspN4I	GGNNCC	4 cut(s)	260, 340, 861, 1104
PspPI	GGNCC	2 cut(s)	628, 827
PspPPI	RGGWCCY	1 cut(s)	628
PstI	CTGCAG	1 cut(s)	116
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	2 cut(s)	88, 1170
RsaI	GTAC	5 cut(s)	81, 129, 185, 244, 899
RsaNI	GTAC	5 cut(s)	80, 128, 184, 243, 898
RseI	CAYNNNNRTG	2 cut(s)	477, 1163
SaqAI	TTAA	3 cut(s)	197, 1176, 1231
SatI	GCNGC	3 cut(s)	326, 879, 944
Sau3AI	GATC	8 cut(s)	88, 101, 649, 712, 814, 918, 967, 1170
Sau96I	GGNCC	2 cut(s)	628, 827
SchI	GAGTC	1 cut(s)	989
SduI	GDGCHC	4 cut(s)	341, 774, 961, 1091
SfaNI	GCATC	2 cut(s)	589, 1137
SfcI	CTRYAG	1 cut(s)	112
SinI	GGWCC	2 cut(s)	628, 827
SmiMI	CAYNNNNRTG	2 cut(s)	477, 1163
SmlI	CTYRAG	2 cut(s)	871, 1119
SmoI	CTYRAG	2 cut(s)	871, 1119
Sse9I	AATT	7 cut(s)	7, 37, 194, 294, 426, 643, 669
SsiI	CCGC	3 cut(s)	325, 878, 1168
SspI	AATATT	1 cut(s)	67
SspMI	CTAG	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	509
TaaI	ACNGT	4 cut(s)	84, 258, 956, 1107
TaiI	ACGT	2 cut(s)	574, 754
TaqI	TCGA	1 cut(s)	970
TasI	AATT	7 cut(s)	7, 37, 194, 294, 426, 643, 669
TatI	WGTACW	3 cut(s)	79, 127, 183
TauI	GCSGC	2 cut(s)	328, 881
TfiI	GAWTC	1 cut(s)	904
Tru1I	TTAA	3 cut(s)	197, 1176, 1231
Tru9I	TTAA	3 cut(s)	197, 1176, 1231
TscAI	CASTG	2 cut(s)	751, 805
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	1 cut(s)	943
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	8 cut(s)	112, 123, 145, 362, 557, 989, 1001, 1147
TspRI	CASTG	2 cut(s)	751, 805
Van91I	CCANNNNNTGG	1 cut(s)	33
VneI	GTGCAC	2 cut(s)	770, 957
VpaK11BI	GGWCC	2 cut(s)	628, 827
XapI	RAATTY	2 cut(s)	37, 643
XceI	RCATGY	2 cut(s)	533, 1168
XcmI	CCANNNNNNNNNTGG	1 cut(s)	840
XspI	CTAG	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.