Rroxscaffold_3G00221740

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
4564044 .. 4565758
1715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00221740.1

Sequence Viewer

Length: 1449 bp
ATGGGTTCCAAAGCCTCAGAGAAGCCACATGCAGTTTGCATACCATACCCAGCTCAAGGTCACATAAACCCAATGCTAAAATTGGCTAAACTGCTCCACTACAAAGGGTTTCATATAACCTTTGTCAACACAGTCTACAACCATGAGCGCCTGCTTAAATCCCGAGGCCCCAAATCCCTTGATGGACTTCCTTCCTTTAGGTTCAAGACAATTCCGGATGGCCTCCCTCCGACTGATGCCAATGCCACCCAACACATACCATCCCTATGTTATTCCACTAGTAAAAACTGCTTAGCACCCTTCAGAAGCCTTCTTTCAGAACTCAATTCTTCGCAAAACTCCCCGCCTGTTACTTGCATAGTTGCTGATGGTGGCATGACCTTCACTCTTGATGCAGCACACGAGCTTGGCCTTCCGGAAGTTCTCCTCAAGACACATAGTGCTTGTGGCTTGTTGTGCTACCTTCACTATGCCCATCTCATTGAAAAGGGTCTTACTCCTCTTAAAGATGCCAGTTATTTGACAAATGGCTATTTGGACACGGTGATAGATTGGATACCAGGCATTAGAAGTATCCGTTTGAGGGACATACCGACCTTCATTAGAACCACAGACCCAGATGACATCATGTTGAAATATCTTGTGGTTGAGATGGAAAGAGCTCAGAGAGCGTCTGCTATCGTTATTAACACATTCGATGCGTTGGAGCATGATGTTTTAGAAGCACTTTCAAGATTGCTACCACCTGTTTACTCCATTGGATCTCTACACCTACAAGTCAATCAGATCCCAGCAGATAGCGATTTGAAGTCAATTGGGTCAAACCTATGGAGAGAAGAACCGAAGTGTCTCGAATGGCTCGACTCCAAAGCACCAAATTCTGTGATTTACGTAAACTTTGGAAGTATCACAGTGATGACAGACGAGCAGCTGATTGAGTTTGCTTGGGGTCTTGCAAATAGCAACATAGCCTTTTTGTGGGTAATTAGGCCTGATCTTGTTGCTGGGGAATTAGCAGTGCTTCCTCCCGAGTTTGTGGAAGAGACCAAGGGAAGGAGTATGTTGGCGAGTTGGTGCTCTCAAGAACAAGTGTTGAACCACCCGGCTGTAGGAGGGTTCTTGACACACAGTGGGTGGAACTCTACGATAGAAAGTGTGTGCGCTGGAGTTCCCATGATATGCTGGCCCTTCTTTGCTGACCAACAAACAAATTGTAGGTTCTGTTGCAAAGAATGGGGTATAGGCATGGAGATAGATGGTGATGTCAAAAGGAATTACATAGAAGGCCTTGCGAGAAAGTTAATGGAAGGAAAGGAAGGCAAAGAGATGAGGAAGAAAGCCTTGGAATGGAAGAACTTGGCAGAGGAGGCCACCACTGCTCCCGATGGTTCGTCTTTCTTGAATTTGGACGAGTTGGTCAACCGGATGCTTCTTTCTCCTAAAAATTAG

Protein Analysis

482

Amino Acids

53.61

Weight (kDa)

5.81

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 12 - 136 6.8e-08 Glycosyltransferase, N-terminal domain
UDPGT PF00201 285 - 414 7.9e-25 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22340 AT1G22360 AT1G22360 AT1G22370 AT1G22370 AT1G22380 AT1G22400 AT1G78270
fragaria_vesca FvH4_5g36970 FvH4_5g36972 FvH4_5g36980 FvH4_5g37000 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020
malus_domestica MD08G1185000.v1.1 MD08G1185500.v1.1 MD08G1185600.v1.1 MD08G1185700.v1.1 MD15G1371800.v1.1
prunus_persica Prupe.1G519500_v2.0.a1 Prupe.1G519600_v2.0.a1 Prupe.1G519700_v2.0.a1 Prupe.1G519800_v2.0.a1 Prupe.1G519900_v2.0.a1 Prupe.1G520000_v2.0.a1 Prupe.1G520100_v2.0.a1 Prupe.1G520200_v2.0.a1 Prupe.1G520300_v2.0.a1 Prupe.1G520400_v2.0.a1 Prupe.1G520400_v2.0.a1
pyrus_communis pycom08g15890 pycom08g15930 pycom15g33310
rosa_chinensis RchiOBHm_Chr7g0231031 RchiOBHm_Chr7g0231091 RchiOBHm_Chr7g0243731 RchiOBHm_Chr7g0243761 RchiOBHm_Chr7g0243781 RchiOBHm_Chr7g0243791 RchiOBHm_Chr7g0243821
rosa_laevigata RLG00000000832 RLG00000000834 RLG00000000835 RLG00000000836 RLG00000000837 RLG00000000838 RLG00000001435 RLG00000001436 RLG00000001650
rosa_multiflora Rmu_co8142950.1_g000001 Rmu_sc0000780.1_g000001 Rmu_sc0000780.1_g000003 Rmu_sc0000780.1_g000006 Rmu_sc0000780.1_g000007 Rmu_sc0012403.1_g000014
rosa_roxburghii Rroxscaffold_3G00221740 Rroxscaffold_3G00221770 Rroxscaffold_3G00221810 Rroxscaffold_3G00221820
rosa_rugosa Rorug07G0264200 Rorug07G0264400 Rorug07G0321000 Rorug07G0321300 Rorug07G0321600 Rorug07G0321700 Rorug07G0321800
rosa_samantha Rh7CG437000 Rh7CG437300 Rh7CG493400 Rh7CG493800 Rh7CG494000 Rh7CG494500
rosa_wichuraiana Rw7G034550 Rw7G039670 Rw7G039680 Rw7G039690 Rw7G039700 Rw7G039740 Rw7G039750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1415
AccI GTMKAC 1 cut(s) 135
AccIII TCCGGA 2 cut(s) 214, 415
AciI CCGC 1 cut(s) 344
AclWI GGATC 2 cut(s) 769, 781
AcsI RAATTY 2 cut(s) 877, 1402
AcuI CTGAAG 1 cut(s) 286
AdeI CACNNNGTG 2 cut(s) 440, 1130
AfiI CCNNNNNNNGG 6 cut(s) 56, 583, 978, 1053, 1109, 1347
AgsI TTSAA 7 cut(s) 205, 485, 634, 732, 808, 1096, 1402
AhlI ACTAGT 1 cut(s) 278
AjnI CCWGG 1 cut(s) 559
AjuI GAANNNNNNNTTGG 2 cut(s) 1325, 1357
AluBI AGCT 4 cut(s) 53, 406, 662, 931
AluI AGCT 4 cut(s) 53, 406, 662, 931
Alw21I GWGCWC 2 cut(s) 664, 1079
Alw26I GTCTC 2 cut(s) 854, 1037
AlwI GGATC 2 cut(s) 769, 781
Ama87I CYCGRG 2 cut(s) 162, 1028
Aor13HI TCCGGA 2 cut(s) 214, 415
AoxI GGCC 7 cut(s) 166, 220, 409, 989, 1184, 1285, 1368
ApeKI GCWGC 2 cut(s) 395, 928
ApoI RAATTY 2 cut(s) 877, 1402
AspLEI GCGC 2 cut(s) 150, 1163
AspS9I GGNCC 2 cut(s) 167, 1185
AsuC2I CCSGG 1 cut(s) 1103
AsuHPI GGTGA 2 cut(s) 556, 1271
AvaI CYCGRG 2 cut(s) 162, 1028
BanII GRGCYC 1 cut(s) 664
BauI CACGAG 1 cut(s) 401
Bbv12I GWGCWC 2 cut(s) 664, 1079
BbvI GCAGC 2 cut(s) 407, 940
BccI CCATC 8 cut(s) 176, 212, 268, 362, 483, 646, 1250, 1379
BciT130I CCWGG 1 cut(s) 561
BciVI GTATCC 2 cut(s) 549, 584
BcnI CCSGG 1 cut(s) 1103
BcoDI GTCTC 2 cut(s) 854, 1037
BcuI ACTAGT 1 cut(s) 278
BfaI CTAG 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 1107
BfoI RGCGCY 1 cut(s) 151
BfuI GTATCC 2 cut(s) 549, 584
BisI GCNGC 2 cut(s) 396, 929
BlpI GCTNAGC 1 cut(s) 292
BlsI GCNGC 2 cut(s) 397, 930
Bme1390I CCNGG 2 cut(s) 561, 1103
BmeT110I CYCGRG 2 cut(s) 162, 1028
BmgT120I GGNCC 2 cut(s) 167, 1185
BmiI GGNNCC 2 cut(s) 7, 169
BmrFI CCNGG 2 cut(s) 561, 1103
BmsI GCATC 5 cut(s) 226, 382, 499, 688, 1416
BpmI CTGGAG 1 cut(s) 1185
Bpu1102I GCTNAGC 1 cut(s) 292
BpuEI CTTGAG 3 cut(s) 39, 413, 1065
BpuMI CCSGG 1 cut(s) 1103
BsaAI YACGTR 1 cut(s) 892
BsaI GGTCTC 1 cut(s) 1037
BsaJI CCNNGG 3 cut(s) 163, 1047, 1341
BsaWI WCCGGW 3 cut(s) 214, 415, 1422
BsaXI ACNNNNNCTCC 2 cut(s) 1363, 1393
Bsc4I CCNNNNNNNGG 6 cut(s) 56, 583, 978, 1053, 1109, 1347
Bse1I ACTGG 1 cut(s) 513
BseAI TCCGGA 2 cut(s) 214, 415
BseBI CCWGG 1 cut(s) 561
BseDI CCNNGG 3 cut(s) 163, 1047, 1341
BseGI GGATG 3 cut(s) 223, 260, 1431
BseLI CCNNNNNNNGG 6 cut(s) 56, 583, 978, 1053, 1109, 1347
BseMII CTCAG 2 cut(s) 30, 677
BseNI ACTGG 1 cut(s) 513
BseRI GAGGAG 3 cut(s) 416, 489, 1379
BseXI GCAGC 2 cut(s) 407, 940
BseYI CCCAGC 3 cut(s) 49, 790, 1004
BshFI GGCC 7 cut(s) 168, 222, 411, 991, 1186, 1287, 1370
BsiHKAI GWGCWC 2 cut(s) 664, 1079
BsiHKCI CYCGRG 2 cut(s) 162, 1028
BsiSI CCGG 4 cut(s) 215, 416, 1103, 1423
BslFI GGGAC 1 cut(s) 599
BslI CCNNNNNNNGG 6 cut(s) 56, 583, 978, 1053, 1109, 1347
BsmAI GTCTC 2 cut(s) 854, 1037
BsmFI GGGAC 1 cut(s) 599
BsnI GGCC 7 cut(s) 168, 222, 411, 991, 1186, 1287, 1370
Bso31I GGTCTC 1 cut(s) 1037
BsoBI CYCGRG 2 cut(s) 162, 1028
Bsp1286I GDGCHC 2 cut(s) 664, 1079
Bsp13I TCCGGA 2 cut(s) 214, 415
Bsp143I GATC 3 cut(s) 761, 786, 994
Bsp1720I GCTNAGC 1 cut(s) 292
BspACI CCGC 1 cut(s) 344
BspANI GGCC 7 cut(s) 168, 222, 411, 991, 1186, 1287, 1370
BspCNI CTCAG 2 cut(s) 29, 676
BspEI TCCGGA 2 cut(s) 214, 415
BspLI GGNNCC 2 cut(s) 7, 169
BspPI GGATC 2 cut(s) 769, 781
BspTNI GGTCTC 1 cut(s) 1037
BsrI ACTGG 1 cut(s) 513
BssECI CCNNGG 3 cut(s) 163, 1047, 1341
BssMI GATC 3 cut(s) 761, 786, 994
BssSI CACGAG 1 cut(s) 401
BssT1I CCWWGG 2 cut(s) 1047, 1341
Bst2BI CACGAG 1 cut(s) 401
Bst2UI CCWGG 1 cut(s) 561
Bst4CI ACNGT 4 cut(s) 133, 544, 913, 1130
Bst6I CTCTTC 1 cut(s) 1035
BstBAI YACGTR 1 cut(s) 892
BstC8I GCNNGC 2 cut(s) 152, 1184
BstDEI CTNAG 3 cut(s) 16, 292, 663
BstF5I GGATG 3 cut(s) 223, 260, 1431
BstH2I RGCGCY 1 cut(s) 151
BstHHI GCGC 2 cut(s) 150, 1163
BstKTI GATC 3 cut(s) 764, 789, 997
BstMAI GTCTC 2 cut(s) 854, 1037
BstMBI GATC 3 cut(s) 761, 786, 994
BstMWI GCNNNNNNNGC 4 cut(s) 456, 668, 1367, 1376
BstNI CCWGG 1 cut(s) 561
BstNSI RCATGY 1 cut(s) 32
BstSCI CCNGG 2 cut(s) 559, 1101
BstSFI CTRYAG 1 cut(s) 1107
BstSNI TACGTA 1 cut(s) 892
BstV1I GCAGC 2 cut(s) 407, 940
BstX2I RGATCY 2 cut(s) 761, 786
BstYI RGATCY 2 cut(s) 761, 786
BsuI GTATCC 2 cut(s) 549, 584
BsuRI GGCC 7 cut(s) 168, 222, 411, 991, 1186, 1287, 1370
BtsCI GGATG 3 cut(s) 223, 260, 1431
BtsI GCAGTG 2 cut(s) 1023, 1374
BtsIMutI CAGTG 4 cut(s) 918, 1023, 1135, 1374
Cac8I GCNNGC 2 cut(s) 152, 1184
CfoI GCGC 2 cut(s) 150, 1163
Cfr13I GGNCC 2 cut(s) 167, 1185
CseI GACGC 1 cut(s) 660
CviAII CATG 7 cut(s) 29, 143, 376, 628, 710, 1174, 1246
DdeI CTNAG 3 cut(s) 16, 292, 663
DpnI GATC 3 cut(s) 763, 788, 996
DpnII GATC 3 cut(s) 761, 786, 994
DraIII CACNNNGTG 2 cut(s) 440, 1130
DrdI GACNNNNNNGTC 1 cut(s) 1415
DseDI GACNNNNNNGTC 1 cut(s) 1415
Eam1104I CTCTTC 1 cut(s) 1035
EarI CTCTTC 1 cut(s) 1035
Ecl136II GAGCTC 1 cut(s) 662
Eco105I TACGTA 1 cut(s) 892
Eco130I CCWWGG 2 cut(s) 1047, 1341
Eco147I AGGCCT 2 cut(s) 991, 1287
Eco24I GRGCYC 1 cut(s) 664
Eco31I GGTCTC 1 cut(s) 1037
Eco53kI GAGCTC 1 cut(s) 662
Eco57I CTGAAG 1 cut(s) 286
Eco88I CYCGRG 2 cut(s) 162, 1028
EcoICRI GAGCTC 1 cut(s) 662
EcoO109I RGGNCCY 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 559
EcoT14I CCWWGG 2 cut(s) 1047, 1341
EcoT38I GRGCYC 1 cut(s) 664
ErhI CCWWGG 2 cut(s) 1047, 1341
FaeI CATG 7 cut(s) 32, 146, 379, 631, 713, 1177, 1249
FalI AAGNNNNNCTT 2 cut(s) 1325, 1357
FaqI GGGAC 1 cut(s) 599
FatI CATG 7 cut(s) 28, 142, 375, 627, 709, 1173, 1245
FauI CCCGC 1 cut(s) 351
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 396, 929
FokI GGATG 3 cut(s) 230, 247, 1438
FriOI GRGCYC 1 cut(s) 664
Fsp4HI GCNGC 2 cut(s) 396, 929
FspBI CTAG 1 cut(s) 279
GlaI GCGC 2 cut(s) 149, 1162
GluI GCNGC 2 cut(s) 396, 929
GsaI CCCAGC 3 cut(s) 53, 794, 1008
GsuI CTGGAG 1 cut(s) 1185
HaeII RGCGCY 1 cut(s) 151
HaeIII GGCC 7 cut(s) 168, 222, 411, 991, 1186, 1287, 1370
HapII CCGG 4 cut(s) 215, 416, 1103, 1423
HgaI GACGC 1 cut(s) 660
HhaI GCGC 2 cut(s) 150, 1163
Hin1II CATG 7 cut(s) 32, 146, 379, 631, 713, 1177, 1249
Hin6I GCGC 2 cut(s) 148, 1161
HinP1I GCGC 2 cut(s) 148, 1161
HincII GTYRAC 2 cut(s) 127, 1420
HindII GTYRAC 2 cut(s) 127, 1420
HinfI GANTC 1 cut(s) 863
HpaII CCGG 4 cut(s) 215, 416, 1103, 1423
HphI GGTGA 2 cut(s) 556, 1271
Hpy166II GTNNAC 5 cut(s) 127, 136, 751, 895, 1420
Hpy188I TCNGA 6 cut(s) 19, 231, 305, 319, 666, 786
Hpy8I GTNNAC 5 cut(s) 127, 136, 751, 895, 1420
HpyCH4III ACNGT 4 cut(s) 133, 544, 913, 1130
HpyCH4IV ACGT 1 cut(s) 891
HpyCH4V TGCA 6 cut(s) 32, 39, 357, 395, 956, 1227
HpyF10VI GCNNNNNNNGC 4 cut(s) 456, 668, 1367, 1376
HpyF3I CTNAG 3 cut(s) 16, 292, 663
HpySE526I ACGT 1 cut(s) 891
Hsp92II CATG 7 cut(s) 32, 146, 379, 631, 713, 1177, 1249
HspAI GCGC 2 cut(s) 148, 1161
Kpn2I TCCGGA 2 cut(s) 214, 415
Kzo9I GATC 3 cut(s) 761, 786, 994
LmnI GCTCC 3 cut(s) 99, 706, 1384
Lsp1109I GCAGC 2 cut(s) 407, 940
LweI GCATC 5 cut(s) 226, 382, 499, 688, 1416
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 891
MaeIII GTNAC 2 cut(s) 59, 349
MalI GATC 3 cut(s) 763, 788, 996
MboI GATC 3 cut(s) 761, 786, 994
MboII GAAGA 5 cut(s) 321, 848, 1052, 1345, 1363
MfeI CAATTG 1 cut(s) 813
MflI RGATCY 2 cut(s) 761, 786
MhlI GDGCHC 2 cut(s) 664, 1079
MlyI GAGTC 1 cut(s) 857
MmeI TCCRAC 2 cut(s) 254, 684
MroI TCCGGA 2 cut(s) 214, 415
MseI TTAA 4 cut(s) 156, 504, 687, 1301
MslI CAYNNNNRTG 2 cut(s) 265, 914
MspA1I CMGCKG 1 cut(s) 931
MspI CCGG 4 cut(s) 215, 416, 1103, 1423
MspR9I CCNGG 2 cut(s) 561, 1103
MunI CAATTG 1 cut(s) 813
MvaI CCWGG 1 cut(s) 561
MwoI GCNNNNNNNGC 4 cut(s) 456, 668, 1367, 1376
NciI CCSGG 1 cut(s) 1103
NdeII GATC 3 cut(s) 761, 786, 994
NlaIII CATG 7 cut(s) 32, 146, 379, 631, 713, 1177, 1249
NlaIV GGNNCC 2 cut(s) 7, 169
NmuCI GTSAC 1 cut(s) 59
NspI RCATGY 1 cut(s) 32
PceI AGGCCT 2 cut(s) 991, 1287
PcsI WCGNNNNNNNCGW 1 cut(s) 858
PkrI GCNGC 2 cut(s) 397, 930
PleI GAGTC 1 cut(s) 857
PpsI GAGTC 1 cut(s) 857
Ppu21I YACGTR 1 cut(s) 892
Psp124BI GAGCTC 1 cut(s) 664
Psp6I CCWGG 1 cut(s) 559
PspFI CCCAGC 3 cut(s) 49, 790, 1004
PspGI CCWGG 1 cut(s) 559
PspN4I GGNNCC 2 cut(s) 7, 169
PspPI GGNCC 2 cut(s) 167, 1185
PsuI RGATCY 2 cut(s) 761, 786
PvuII CAGCTG 1 cut(s) 931
RseI CAYNNNNRTG 2 cut(s) 265, 914
SacI GAGCTC 1 cut(s) 664
SaqAI TTAA 4 cut(s) 156, 504, 687, 1301
SatI GCNGC 2 cut(s) 396, 929
Sau3AI GATC 3 cut(s) 761, 786, 994
Sau96I GGNCC 2 cut(s) 167, 1185
SchI GAGTC 1 cut(s) 857
ScrFI CCNGG 2 cut(s) 561, 1103
SduI GDGCHC 2 cut(s) 664, 1079
SfaNI GCATC 5 cut(s) 226, 382, 499, 688, 1416
SfcI CTRYAG 1 cut(s) 1107
SmiMI CAYNNNNRTG 2 cut(s) 265, 914
SmlI CTYRAG 3 cut(s) 54, 428, 1080
SmoI CTYRAG 3 cut(s) 54, 428, 1080
SnaBI TACGTA 1 cut(s) 892
SpeI ACTAGT 1 cut(s) 278
SseBI AGGCCT 2 cut(s) 991, 1287
SsiI CCGC 1 cut(s) 344
SspMI CTAG 1 cut(s) 279
SstI GAGCTC 1 cut(s) 664
StuI AGGCCT 2 cut(s) 991, 1287
StyD4I CCNGG 2 cut(s) 559, 1101
StyI CCWWGG 2 cut(s) 1047, 1341
TaaI ACNGT 4 cut(s) 133, 544, 913, 1130
TaiI ACGT 1 cut(s) 894
TaqI TCGA 3 cut(s) 696, 852, 861
Tru1I TTAA 4 cut(s) 156, 504, 687, 1301
Tru9I TTAA 4 cut(s) 156, 504, 687, 1301
TscAI CASTG 4 cut(s) 918, 1023, 1135, 1381
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 2 cut(s) 395, 928
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 2 cut(s) 101, 589
TspGWI ACGGA 1 cut(s) 566
TspRI CASTG 4 cut(s) 918, 1023, 1135, 1381
XapI RAATTY 2 cut(s) 877, 1402
XceI RCATGY 1 cut(s) 32
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.