Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000553

Physical Location & Seq

Genomic Coordinates Reverse (-)

33063970 .. 33064319

Gene Structure 350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0321700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGATCCTAATGATCATTTTCTTAAGCTAAACTTTGATGGTTTAGTTAAAAATGGGAAAGCTTCCATTGGATTTGTTATCGTAATTGCAGCTTGCAGGATGATAGGCTCAACGGAAGGGGATTCCAAGATTCTCATTGACTGCATCAAGGGCAAAGCAAATATTCCATGGACTTTGAAGATTTTAGTTCAAGATATTCAACATCTAGCTCAACAATTTCAAAGAAGCAAATTTTGTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

80

Amino Acids

8.89

Weight (kDa)

8.93

Isoelectric Point (pI)

22.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22340 AT1G22360 AT1G22360 AT1G22370 AT1G22370 AT1G22380 AT1G22400 AT1G78270
fragaria_vesca	FvH4_5g36970 FvH4_5g36972 FvH4_5g36980 FvH4_5g37000 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020
malus_domestica	MD08G1185000.v1.1 MD08G1185500.v1.1 MD08G1185600.v1.1 MD08G1185700.v1.1 MD15G1371800.v1.1
prunus_persica	Prupe.1G519500_v2.0.a1 Prupe.1G519600_v2.0.a1 Prupe.1G519700_v2.0.a1 Prupe.1G519800_v2.0.a1 Prupe.1G519900_v2.0.a1 Prupe.1G520000_v2.0.a1 Prupe.1G520100_v2.0.a1 Prupe.1G520200_v2.0.a1 Prupe.1G520300_v2.0.a1 Prupe.1G520400_v2.0.a1 Prupe.1G520400_v2.0.a1
pyrus_communis	pycom08g15890 pycom08g15930 pycom15g33310
rosa_chinensis	RchiOBHm_Chr7g0231031 RchiOBHm_Chr7g0231091 RchiOBHm_Chr7g0243731 RchiOBHm_Chr7g0243761 RchiOBHm_Chr7g0243781 RchiOBHm_Chr7g0243791 RchiOBHm_Chr7g0243821
rosa_laevigata	RLG00000000832 RLG00000000834 RLG00000000835 RLG00000000836 RLG00000000837 RLG00000000838 RLG00000001435 RLG00000001436 RLG00000001650
rosa_multiflora	Rmu_co8142950.1_g000001 Rmu_sc0000780.1_g000001 Rmu_sc0000780.1_g000003 Rmu_sc0000780.1_g000006 Rmu_sc0000780.1_g000007 Rmu_sc0012403.1_g000014
rosa_roxburghii	Rroxscaffold_3G00221740 Rroxscaffold_3G00221770 Rroxscaffold_3G00221810 Rroxscaffold_3G00221820
rosa_rugosa	Rorug07G0264200 Rorug07G0264400 Rorug07G0321000 Rorug07G0321300 Rorug07G0321600 Rorug07G0321700 Rorug07G0321800
rosa_samantha	Rh7CG437000 Rh7CG437300 Rh7CG493400 Rh7CG493800 Rh7CG494000 Rh7CG494500
rosa_wichuraiana	Rw7G034550 Rw7G039670 Rw7G039680 Rw7G039690 Rw7G039700 Rw7G039740 Rw7G039750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	230
AflII	CTTAAG	1 cut(s)	23
AgsI	TTSAA	4 cut(s)	178, 191, 200, 221
AluBI	AGCT	5 cut(s)	28, 62, 92, 209, 240
AluI	AGCT	5 cut(s)	28, 62, 92, 209, 240
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	230
BamHI	GGATCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	1 cut(s)	32
BclI	TGATCA	1 cut(s)	13
BfaI	CTAG	1 cut(s)	206
BfrI	CTTAAG	1 cut(s)	23
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	101
Bsp143I	GATC	2 cut(s)	4, 13
Bsp19I	CCATGG	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	2 cut(s)	4, 13
BssT1I	CCWWGG	1 cut(s)	167
BstAFI	CTTAAG	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	94
BstDSI	CCRYGG	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	105
BstKTI	GATC	2 cut(s)	7, 16
BstMBI	GATC	2 cut(s)	4, 13
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BtgI	CCRYGG	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	94
CviAII	CATG	1 cut(s)	168
CviJI	RGCY	6 cut(s)	28, 62, 92, 108, 209, 240
CviKI_1	RGCY	6 cut(s)	28, 62, 92, 108, 209, 240
DpnI	GATC	2 cut(s)	6, 15
DpnII	GATC	2 cut(s)	4, 13
Eco130I	CCWWGG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	1 cut(s)	171
FaiI	YATR	1 cut(s)	169
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FatI	CATG	1 cut(s)	167
FbaI	TGATCA	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	1 cut(s)	206
GluI	GCNGC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	171
HindIII	AAGCTT	1 cut(s)	60
HinfI	GANTC	2 cut(s)	122, 130
Hpy188III	TCNNGA	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	110
HpyCH4V	TGCA	3 cut(s)	89, 96, 144
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	171
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	4, 13
LpnPI	CCDG	1 cut(s)	82
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	1 cut(s)	206
MalI	GATC	2 cut(s)	6, 15
MboI	GATC	2 cut(s)	4, 13
MboII	GAAGA	1 cut(s)	190
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	3 cut(s)	84, 215, 230
MseI	TTAA	2 cut(s)	24, 48
MspCI	CTTAAG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	150
NcoI	CCATGG	1 cut(s)	167
NdeII	GATC	2 cut(s)	4, 13
NlaIII	CATG	1 cut(s)	171
NlaIV	GGNNCC	1 cut(s)	6
PfeI	GAWTC	2 cut(s)	122, 130
PkrI	GCNGC	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	24, 48
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	2 cut(s)	4, 13
SetI	ASST	5 cut(s)	30, 64, 94, 211, 242
SfaNI	GCATC	1 cut(s)	153
SgeI	CNNG	7 cut(s)	105, 109, 139, 160, 180, 203, 218
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	3 cut(s)	84, 215, 230
SspI	AATATT	1 cut(s)	163
SspMI	CTAG	1 cut(s)	206
StyI	CCWWGG	1 cut(s)	167
TasI	AATT	3 cut(s)	84, 215, 230
TfiI	GAWTC	2 cut(s)	122, 130
Tru1I	TTAA	2 cut(s)	24, 48
Tru9I	TTAA	2 cut(s)	24, 48
TseI	GCWGC	1 cut(s)	89
TspGWI	ACGGA	1 cut(s)	128
Vha464I	CTTAAG	1 cut(s)	23
XapI	RAATTY	1 cut(s)	230
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.