Rmu_co8142950.1_g000001

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8142950.1
OG0000553
Physical Location & Seq
Forward (+)
1 .. 642
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8142950.1_g000001.1.cds

Sequence Viewer

Length: 642 bp
cctctcgaccctcctacctccagtctactccatcgggcccctaaacctacaagtcaaccaaatcccacccgacagtgagttgcagacctttgggtcgaatctctggaaggaagagacagagggtttggaatggctggactctaaggagcccaaatctgttgtctacgtcaacttcggaagcatcacagtgatgacccaaactcagctgatcgagttcgcttgggggctcgcaaacagcaagaagacgtttctctgggttatcaggcctgacctagttgggggagcatcggctatggtgccggcagagtttgtagaggagacgagagaaagaagcatgttgatcagttggtgtcctcaggaccaagtcctgagccacccagcgatcggagggttcttgactcacagcgggtggaactcgacagtcgagagtgtctgcggcggagtgccaatgatatgctggcctttcttcgccgagcaacagacgaactgcaggtactgttgcaatgattggggaatagggatggagattgagggtgatcctaagagagattatatagaagagcttgtgaggaagttgatggagggagaagaagggaaagagatgaagaagaaagctctggaatggaagaggttggcaatgga

Protein Analysis

213

Amino Acids

24.1

Weight (kDa)

4.78

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22340 AT1G22360 AT1G22360 AT1G22370 AT1G22370 AT1G22380 AT1G22400 AT1G78270
fragaria_vesca FvH4_5g36970 FvH4_5g36972 FvH4_5g36980 FvH4_5g37000 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020
malus_domestica MD08G1185000.v1.1 MD08G1185500.v1.1 MD08G1185600.v1.1 MD08G1185700.v1.1 MD15G1371800.v1.1
prunus_persica Prupe.1G519500_v2.0.a1 Prupe.1G519600_v2.0.a1 Prupe.1G519700_v2.0.a1 Prupe.1G519800_v2.0.a1 Prupe.1G519900_v2.0.a1 Prupe.1G520000_v2.0.a1 Prupe.1G520100_v2.0.a1 Prupe.1G520200_v2.0.a1 Prupe.1G520300_v2.0.a1 Prupe.1G520400_v2.0.a1 Prupe.1G520400_v2.0.a1
pyrus_communis pycom08g15890 pycom08g15930 pycom15g33310
rosa_chinensis RchiOBHm_Chr7g0231031 RchiOBHm_Chr7g0231091 RchiOBHm_Chr7g0243731 RchiOBHm_Chr7g0243761 RchiOBHm_Chr7g0243781 RchiOBHm_Chr7g0243791 RchiOBHm_Chr7g0243821
rosa_laevigata RLG00000000832 RLG00000000834 RLG00000000835 RLG00000000836 RLG00000000837 RLG00000000838 RLG00000001435 RLG00000001436 RLG00000001650
rosa_multiflora Rmu_co8142950.1_g000001 Rmu_sc0000780.1_g000001 Rmu_sc0000780.1_g000003 Rmu_sc0000780.1_g000006 Rmu_sc0000780.1_g000007 Rmu_sc0012403.1_g000014
rosa_roxburghii Rroxscaffold_3G00221740 Rroxscaffold_3G00221770 Rroxscaffold_3G00221810 Rroxscaffold_3G00221820
rosa_rugosa Rorug07G0264200 Rorug07G0264400 Rorug07G0321000 Rorug07G0321300 Rorug07G0321600 Rorug07G0321700 Rorug07G0321800
rosa_samantha Rh7CG437000 Rh7CG437300 Rh7CG493400 Rh7CG493800 Rh7CG494000 Rh7CG494500
rosa_wichuraiana Rw7G034550 Rw7G039670 Rw7G039680 Rw7G039690 Rw7G039700 Rw7G039740 Rw7G039750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 481
AccB1I GGYRCC 1 cut(s) 296
AccI GTMKAC 2 cut(s) 25, 163
AciI CCGC 3 cut(s) 406, 436, 439
AclWI GGATC 1 cut(s) 531
AfaI GTAC 1 cut(s) 495
AfiI CCNNNNNNNGG 2 cut(s) 278, 384
AluBI AGCT 3 cut(s) 206, 563, 615
AluI AGCT 3 cut(s) 206, 563, 615
Alw26I GTCTC 2 cut(s) 108, 312
AlwI GGATC 1 cut(s) 531
AlwNI CAGNNNCTG 1 cut(s) 496
AoxI GGCC 3 cut(s) 36, 264, 459
ApaI GGGCCC 1 cut(s) 40
ArsI GACNNNNNNTTYG 4 cut(s) 107, 139, 145, 177
AspS9I GGNCC 3 cut(s) 36, 37, 359
AsuHPI GGTGA 1 cut(s) 546
AvaII GGWCC 1 cut(s) 359
AxyI CCTNAGG 1 cut(s) 355
BaeGI GKGCMC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 296
BanII GRGCYC 3 cut(s) 40, 151, 229
BbsI GAAGAC 1 cut(s) 249
BccI CCATC 3 cut(s) 39, 515, 572
BclI TGATCA 1 cut(s) 340
BcoDI GTCTC 2 cut(s) 108, 312
BfaI CTAG 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 488
BfuAI ACCTGC 1 cut(s) 481
BisI GCNGC 1 cut(s) 437
BlsI GCNGC 1 cut(s) 438
Bme18I GGWCC 1 cut(s) 359
BmgT120I GGNCC 3 cut(s) 36, 37, 359
BmiI GGNNCC 4 cut(s) 38, 39, 148, 298
BmsI GCATC 2 cut(s) 190, 294
BpiI GAAGAC 1 cut(s) 249
BpmI CTGGAG 1 cut(s) 4
Bpu10I CCTNAGC 1 cut(s) 369
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 384
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 1 cut(s) 21
Bse21I CCTNAGG 1 cut(s) 355
Bse3DI GCAATG 1 cut(s) 509
BseGI GGATG 1 cut(s) 526
BseLI CCNNNNNNNGG 2 cut(s) 278, 384
BseMI GCAATG 1 cut(s) 509
BseMII CTCAG 3 cut(s) 216, 360, 369
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 330
BseSI GKGCMC 1 cut(s) 40
BseYI CCCAGC 1 cut(s) 377
Bsh1285I CGRYCG 1 cut(s) 385
BshFI GGCC 3 cut(s) 38, 266, 461
BshNI GGYRCC 1 cut(s) 296
BsiEI CGRYCG 1 cut(s) 385
BsiSI CCGG 1 cut(s) 300
BslI CCNNNNNNNGG 2 cut(s) 278, 384
BsmAI GTCTC 2 cut(s) 108, 312
BsmBI CGTCTC 1 cut(s) 312
BsnI GGCC 3 cut(s) 38, 266, 461
Bsp120I GGGCCC 1 cut(s) 36
Bsp1286I GDGCHC 3 cut(s) 40, 151, 229
Bsp143I GATC 4 cut(s) 208, 340, 382, 536
BspACI CCGC 3 cut(s) 406, 436, 439
BspANI GGCC 3 cut(s) 38, 266, 461
BspCNI CTCAG 3 cut(s) 215, 361, 368
BspLI GGNNCC 4 cut(s) 38, 39, 148, 298
BspMAI CTGCAG 1 cut(s) 492
BspMI ACCTGC 1 cut(s) 481
BspPI GGATC 1 cut(s) 531
BspQI GCTCTTC 1 cut(s) 553
BspT107I GGYRCC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 509
BsrFI RCCGGY 1 cut(s) 299
BsrI ACTGG 1 cut(s) 21
BssAI RCCGGY 1 cut(s) 299
BssMI GATC 4 cut(s) 208, 340, 382, 536
Bst4CI ACNGT 4 cut(s) 75, 188, 422, 498
Bst6I CTCTTC 3 cut(s) 106, 553, 621
BstC8I GCNNGC 3 cut(s) 229, 301, 459
BstDEI CTNAG 5 cut(s) 142, 202, 355, 369, 541
BstF5I GGATG 1 cut(s) 526
BstKTI GATC 4 cut(s) 211, 343, 385, 539
BstMAI GTCTC 2 cut(s) 108, 312
BstMBI GATC 4 cut(s) 208, 340, 382, 536
BstMCI CGRYCG 1 cut(s) 385
BstNSI RCATGY 1 cut(s) 338
BstSFI CTRYAG 1 cut(s) 488
BstSLI GKGCMC 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 249
Bsu36I CCTNAGG 1 cut(s) 355
BsuRI GGCC 3 cut(s) 38, 266, 461
BtsCI GGATG 1 cut(s) 526
BtsIMutI CAGTG 2 cut(s) 80, 193
BveI ACCTGC 1 cut(s) 481
Cac8I GCNNGC 3 cut(s) 229, 301, 459
CaiI CAGNNNCTG 1 cut(s) 496
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 3 cut(s) 36, 37, 359
Csp6I GTAC 1 cut(s) 494
CviAII CATG 1 cut(s) 335
CviQI GTAC 1 cut(s) 494
DdeI CTNAG 5 cut(s) 142, 202, 355, 369, 541
DpnI GATC 4 cut(s) 210, 342, 384, 538
DpnII GATC 4 cut(s) 208, 340, 382, 536
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
Eam1104I CTCTTC 3 cut(s) 106, 553, 621
EarI CTCTTC 3 cut(s) 106, 553, 621
EciI GGCGGA 1 cut(s) 454
Eco147I AGGCCT 1 cut(s) 266
Eco24I GRGCYC 3 cut(s) 40, 151, 229
Eco47I GGWCC 1 cut(s) 359
Eco81I CCTNAGG 1 cut(s) 355
EcoO109I RGGNCCY 1 cut(s) 37
EcoT38I GRGCYC 3 cut(s) 40, 151, 229
Esp3I CGTCTC 1 cut(s) 312
FaeI CATG 1 cut(s) 338
FaiI YATR 5 cut(s) 294, 336, 455, 553, 555
FatI CATG 1 cut(s) 334
FauI CCCGC 1 cut(s) 399
FbaI TGATCA 1 cut(s) 340
FblI GTMKAC 2 cut(s) 25, 163
Fnu4HI GCNGC 1 cut(s) 437
FokI GGATG 1 cut(s) 533
FriOI GRGCYC 3 cut(s) 40, 151, 229
Fsp4HI GCNGC 1 cut(s) 437
FspBI CTAG 1 cut(s) 273
GluI GCNGC 1 cut(s) 437
GsaI CCCAGC 1 cut(s) 381
GsuI CTGGAG 1 cut(s) 4
HaeIII GGCC 3 cut(s) 38, 266, 461
HapII CCGG 1 cut(s) 300
Hin1II CATG 1 cut(s) 338
HincII GTYRAC 2 cut(s) 56, 170
HindII GTYRAC 2 cut(s) 56, 170
HinfI GANTC 3 cut(s) 98, 138, 398
HpaII CCGG 1 cut(s) 300
HphI GGTGA 1 cut(s) 546
Hpy166II GTNNAC 4 cut(s) 26, 56, 164, 170
Hpy188I TCNGA 2 cut(s) 177, 387
Hpy188III TCNNGA 7 cut(s) 5, 104, 357, 368, 395, 425, 618
Hpy8I GTNNAC 4 cut(s) 26, 56, 164, 170
HpyAV CCTTC 2 cut(s) 101, 585
HpyCH4III ACNGT 4 cut(s) 75, 188, 422, 498
HpyCH4IV ACGT 2 cut(s) 166, 246
HpyCH4V TGCA 3 cut(s) 83, 490, 502
HpyF3I CTNAG 5 cut(s) 142, 202, 355, 369, 541
HpySE526I ACGT 2 cut(s) 166, 246
Hsp92II CATG 1 cut(s) 338
KroI GCCGGC 1 cut(s) 299
KroNI GCCGGC 1 cut(s) 301
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 4 cut(s) 208, 340, 382, 536
LguI GCTCTTC 1 cut(s) 553
LmnI GCTCC 2 cut(s) 146, 282
LweI GCATC 2 cut(s) 190, 294
MaeI CTAG 1 cut(s) 273
MaeII ACGT 2 cut(s) 166, 246
MalI GATC 4 cut(s) 210, 342, 384, 538
MboI GATC 4 cut(s) 208, 340, 382, 536
MboII GAAGA 8 cut(s) 123, 254, 458, 570, 600, 617, 620, 638
MhlI GDGCHC 3 cut(s) 40, 151, 229
MlyI GAGTC 2 cut(s) 132, 392
MroNI GCCGGC 1 cut(s) 299
MslI CAYNNNNRTG 2 cut(s) 186, 189
MspA1I CMGCKG 2 cut(s) 206, 406
MspI CCGG 1 cut(s) 300
NaeI GCCGGC 1 cut(s) 301
NdeII GATC 4 cut(s) 208, 340, 382, 536
NgoMIV GCCGGC 1 cut(s) 299
NlaIII CATG 1 cut(s) 338
NlaIV GGNNCC 4 cut(s) 38, 39, 148, 298
NmeAIII GCCGAG 1 cut(s) 497
NspI RCATGY 1 cut(s) 338
PceI AGGCCT 1 cut(s) 266
PciSI GCTCTTC 1 cut(s) 553
PdiI GCCGGC 1 cut(s) 301
PfeI GAWTC 1 cut(s) 98
PflFI GACNNNGTC 1 cut(s) 363
PkrI GCNGC 1 cut(s) 438
Ple19I CGATCG 1 cut(s) 385
PleI GAGTC 2 cut(s) 132, 392
PpsI GAGTC 2 cut(s) 132, 392
PspFI CCCAGC 1 cut(s) 377
PspN4I GGNNCC 4 cut(s) 38, 39, 148, 298
PspOMI GGGCCC 1 cut(s) 36
PspPI GGNCC 3 cut(s) 36, 37, 359
PsrI GAACNNNNNNTAC 2 cut(s) 477, 509
PstI CTGCAG 1 cut(s) 492
PstNI CAGNNNCTG 1 cut(s) 496
PsyI GACNNNGTC 1 cut(s) 363
PvuI CGATCG 1 cut(s) 385
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 1 cut(s) 495
RsaNI GTAC 1 cut(s) 494
RseI CAYNNNNRTG 2 cut(s) 186, 189
SapI GCTCTTC 1 cut(s) 553
SatI GCNGC 1 cut(s) 437
Sau3AI GATC 4 cut(s) 208, 340, 382, 536
Sau96I GGNCC 3 cut(s) 36, 37, 359
SchI GAGTC 2 cut(s) 132, 392
SduI GDGCHC 3 cut(s) 40, 151, 229
SfaNI GCATC 2 cut(s) 190, 294
SfcI CTRYAG 1 cut(s) 488
SinI GGWCC 1 cut(s) 359
SmiMI CAYNNNNRTG 2 cut(s) 186, 189
SseBI AGGCCT 1 cut(s) 266
SsiI CCGC 3 cut(s) 406, 436, 439
SspMI CTAG 1 cut(s) 273
StuI AGGCCT 1 cut(s) 266
TaaI ACNGT 4 cut(s) 75, 188, 422, 498
TaiI ACGT 2 cut(s) 169, 249
TaqI TCGA 5 cut(s) 6, 96, 211, 417, 424
TauI GCSGC 1 cut(s) 439
TfiI GAWTC 1 cut(s) 98
TscAI CASTG 2 cut(s) 80, 193
TspDTI ATGAA 1 cut(s) 618
TspRI CASTG 2 cut(s) 80, 193
Tth111I GACNNNGTC 1 cut(s) 363
VpaK11BI GGWCC 1 cut(s) 359
XceI RCATGY 1 cut(s) 338
XcmI CCANNNNNNNNNTGG 1 cut(s) 454
XmiI GTMKAC 2 cut(s) 25, 163
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.