Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000553

Physical Location & Seq

Genomic Coordinates Reverse (-)

4664525 .. 4665563

Gene Structure 1039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00221770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCTAAAATTGGCTAAACTGCTCCACTACAAAGGGTTTCATATAACCTTTGTCAACACGATCTACAACCATGAGCGCTCGCTTAAATCCCGAGGCCCCAAATCCCTTGATGGACTTCCTTCCTTTAGGTTCAAGACAATTCCCGATGGCCTCCCTCCGACCGATGCCAATGCCACCCAACACATACCATCGCTATGTTATTCCACTAGTAAAAACTGCTTAGCACCCTTCGAAGCCTTCTTTCGAACTCAATTCTTCGCAAAACTCCCCGCCCGTTACTTGCATAGTTGCGATGGTGGTATGACCTTCACTCTTGATGCGGCACACGAGCTTGGCCTTCCGGAAGTTCTTCTCAAGACACAAAGTGCTTGTGGCTTGTTGTGCTACCTTCACTATGCCCATCTCATTGAAAAGGGTCTTACTCCTCTTAAAGTCAATTGGGTTAAACCTACGGAGAGAAGAACCGAGTGTCTTGAATGGCTCGACTCCAAAGCACCAAATTCTGTGGTTTATGTAAACTTTGGAAGTATCACTGTCTTGAAAGATGAGCAGCTGATTGAGTTTGCTTGGGGTCTTGCAAAGAGCAATATGACCTTTTTGTGGGTGATTAGGCCGGATGCGGTTTCGCGAAATCAGCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

213

Amino Acids

24.16

Weight (kDa)

9.12

Isoelectric Point (pI)

46.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22340 AT1G22360 AT1G22360 AT1G22370 AT1G22370 AT1G22380 AT1G22400 AT1G78270
fragaria_vesca	FvH4_5g36970 FvH4_5g36972 FvH4_5g36980 FvH4_5g37000 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020
malus_domestica	MD08G1185000.v1.1 MD08G1185500.v1.1 MD08G1185600.v1.1 MD08G1185700.v1.1 MD15G1371800.v1.1
prunus_persica	Prupe.1G519500_v2.0.a1 Prupe.1G519600_v2.0.a1 Prupe.1G519700_v2.0.a1 Prupe.1G519800_v2.0.a1 Prupe.1G519900_v2.0.a1 Prupe.1G520000_v2.0.a1 Prupe.1G520100_v2.0.a1 Prupe.1G520200_v2.0.a1 Prupe.1G520300_v2.0.a1 Prupe.1G520400_v2.0.a1 Prupe.1G520400_v2.0.a1
pyrus_communis	pycom08g15890 pycom08g15930 pycom15g33310
rosa_chinensis	RchiOBHm_Chr7g0231031 RchiOBHm_Chr7g0231091 RchiOBHm_Chr7g0243731 RchiOBHm_Chr7g0243761 RchiOBHm_Chr7g0243781 RchiOBHm_Chr7g0243791 RchiOBHm_Chr7g0243821
rosa_laevigata	RLG00000000832 RLG00000000834 RLG00000000835 RLG00000000836 RLG00000000837 RLG00000000838 RLG00000001435 RLG00000001436 RLG00000001650
rosa_multiflora	Rmu_co8142950.1_g000001 Rmu_sc0000780.1_g000001 Rmu_sc0000780.1_g000003 Rmu_sc0000780.1_g000006 Rmu_sc0000780.1_g000007 Rmu_sc0012403.1_g000014
rosa_roxburghii	Rroxscaffold_3G00221740 Rroxscaffold_3G00221770 Rroxscaffold_3G00221810 Rroxscaffold_3G00221820
rosa_rugosa	Rorug07G0264200 Rorug07G0264400 Rorug07G0321000 Rorug07G0321300 Rorug07G0321600 Rorug07G0321700 Rorug07G0321800
rosa_samantha	Rh7CG437000 Rh7CG437300 Rh7CG493400 Rh7CG493800 Rh7CG494000 Rh7CG494500
rosa_wichuraiana	Rw7G034550 Rw7G039670 Rw7G039680 Rw7G039690 Rw7G039700 Rw7G039740 Rw7G039750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	628
AccIII	TCCGGA	1 cut(s)	340
AciI	CCGC	4 cut(s)	270, 320, 620, 637
AcsI	RAATTY	1 cut(s)	499
AdeI	CACNNNGTG	1 cut(s)	365
AfeI	AGCGCT	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	600
AgsI	TTSAA	4 cut(s)	133, 410, 476, 541
AhlI	ACTAGT	1 cut(s)	206
AluBI	AGCT	2 cut(s)	331, 553
AluI	AGCT	2 cut(s)	331, 553
Ama87I	CYCGRG	1 cut(s)	90
Aor13HI	TCCGGA	1 cut(s)	340
Aor51HI	AGCGCT	1 cut(s)	77
AoxI	GGCC	4 cut(s)	94, 148, 334, 611
ApeKI	GCWGC	1 cut(s)	550
ApoI	RAATTY	1 cut(s)	499
Asp700I	GAANNNNTTC	1 cut(s)	348
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	616
AsuII	TTCGAA	2 cut(s)	231, 244
AvaI	CYCGRG	1 cut(s)	90
BauI	CACGAG	1 cut(s)	326
BbvI	GCAGC	1 cut(s)	562
BccI	CCATC	5 cut(s)	104, 140, 196, 287, 408
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BcuI	ACTAGT	1 cut(s)	206
BfaI	CTAG	1 cut(s)	207
BfoI	RGCGCY	1 cut(s)	79
BisI	GCNGC	2 cut(s)	321, 551
BlpI	GCTNAGC	1 cut(s)	220
BlsI	GCNGC	2 cut(s)	322, 552
BmeT110I	CYCGRG	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	1 cut(s)	97
BmsI	GCATC	3 cut(s)	154, 307, 607
Bpu1102I	GCTNAGC	1 cut(s)	220
Bpu14I	TTCGAA	2 cut(s)	231, 244
BpuEI	CTTGAG	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	91
BsaWI	WCCGGW	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	1 cut(s)	600
BseAI	TCCGGA	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	622
BseLI	CCNNNNNNNGG	1 cut(s)	600
BseRI	GAGGAG	1 cut(s)	414
BseXI	GCAGC	1 cut(s)	562
Bsh1236I	CGCG	1 cut(s)	628
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	4 cut(s)	96, 150, 336, 613
BsiEI	CGRYCG	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	341, 614
BslI	CCNNNNNNNGG	1 cut(s)	600
BsnI	GGCC	4 cut(s)	96, 150, 336, 613
BsoBI	CYCGRG	1 cut(s)	90
Bsp119I	TTCGAA	2 cut(s)	231, 244
Bsp13I	TCCGGA	1 cut(s)	340
Bsp143I	GATC	1 cut(s)	60
Bsp1720I	GCTNAGC	1 cut(s)	220
Bsp68I	TCGCGA	1 cut(s)	628
BspACI	CCGC	4 cut(s)	270, 320, 620, 637
BspANI	GGCC	4 cut(s)	96, 150, 336, 613
BspEI	TCCGGA	1 cut(s)	340
BspFNI	CGCG	1 cut(s)	628
BspLI	GGNNCC	1 cut(s)	97
BspT104I	TTCGAA	2 cut(s)	231, 244
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	326
Bst2BI	CACGAG	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	535
BstBI	TTCGAA	2 cut(s)	231, 244
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	622
BstFNI	CGCG	1 cut(s)	628
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	60
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	2 cut(s)	381, 634
BstUI	CGCG	1 cut(s)	628
BstV1I	GCAGC	1 cut(s)	562
BsuRI	GGCC	4 cut(s)	96, 150, 336, 613
BtgZI	GCGATG	2 cut(s)	174, 306
BtsCI	GGATG	1 cut(s)	622
BtsIMutI	CAGTG	1 cut(s)	531
BtuMI	TCGCGA	1 cut(s)	628
Cac8I	GCNNGC	1 cut(s)	80
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	95
CspCI	CAANNNNNGTGG	2 cut(s)	486, 521
CviAII	CATG	1 cut(s)	71
DdeI	CTNAG	1 cut(s)	220
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
DraIII	CACNNNGTG	1 cut(s)	365
Eco47III	AGCGCT	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	90
EcoO109I	RGGNCCY	1 cut(s)	95
FaeI	CATG	1 cut(s)	74
FatI	CATG	1 cut(s)	70
FauI	CCCGC	1 cut(s)	277
Fnu4HI	GCNGC	2 cut(s)	321, 551
FokI	GGATG	1 cut(s)	629
Fsp4HI	GCNGC	2 cut(s)	321, 551
FspBI	CTAG	1 cut(s)	207
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	2 cut(s)	321, 551
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	4 cut(s)	96, 150, 336, 613
HapII	CCGG	2 cut(s)	341, 614
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	74
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	1 cut(s)	485
HpaII	CCGG	2 cut(s)	341, 614
HphI	GGTGA	1 cut(s)	616
Hpy166II	GTNNAC	2 cut(s)	55, 517
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	9 cut(s)	90, 133, 143, 314, 341, 355, 473, 538, 627
Hpy8I	GTNNAC	2 cut(s)	55, 517
HpyAV	CCTTC	6 cut(s)	129, 238, 247, 316, 347, 398
HpyCH4III	ACNGT	1 cut(s)	535
HpyCH4V	TGCA	2 cut(s)	283, 578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	381, 634
HpyF3I	CTNAG	1 cut(s)	220
Hsp92II	CATG	1 cut(s)	74
HspAI	GCGC	1 cut(s)	76
Kpn2I	TCCGGA	1 cut(s)	340
Kzo9I	GATC	1 cut(s)	60
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	2 cut(s)	354, 627
Lsp1109I	GCAGC	1 cut(s)	562
LweI	GCATC	3 cut(s)	154, 307, 607
MaeI	CTAG	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	3 cut(s)	247, 341, 471
MfeI	CAATTG	1 cut(s)	436
MluCI	AATT	5 cut(s)	8, 138, 251, 436, 499
MlyI	GAGTC	1 cut(s)	479
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	4 cut(s)	86, 161, 165, 435
MroI	TCCGGA	1 cut(s)	340
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	3 cut(s)	84, 429, 444
MslI	CAYNNNNRTG	1 cut(s)	193
MspA1I	CMGCKG	2 cut(s)	553, 637
MspI	CCGG	2 cut(s)	341, 614
MunI	CAATTG	1 cut(s)	436
MvnI	CGCG	1 cut(s)	628
MwoI	GCNNNNNNNGC	2 cut(s)	381, 634
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	1 cut(s)	74
NlaIV	GGNNCC	1 cut(s)	97
NruI	TCGCGA	1 cut(s)	628
NspV	TTCGAA	2 cut(s)	231, 244
PdmI	GAANNNNTTC	1 cut(s)	348
PkrI	GCNGC	2 cut(s)	322, 552
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
PspN4I	GGNNCC	1 cut(s)	97
PspPI	GGNCC	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	553
RruI	TCGCGA	1 cut(s)	628
RseI	CAYNNNNRTG	1 cut(s)	193
SaqAI	TTAA	3 cut(s)	84, 429, 444
SatI	GCNGC	2 cut(s)	321, 551
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	479
SetI	ASST	8 cut(s)	50, 131, 308, 333, 390, 451, 555, 596
SfaNI	GCATC	3 cut(s)	154, 307, 607
SfuI	TTCGAA	2 cut(s)	231, 244
SmiMI	CAYNNNNRTG	1 cut(s)	193
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
SpeI	ACTAGT	1 cut(s)	206
Sse9I	AATT	5 cut(s)	8, 138, 251, 436, 499
SsiI	CCGC	4 cut(s)	270, 320, 620, 637
SspMI	CTAG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	535
TaqI	TCGA	3 cut(s)	231, 244, 483
TaqII	GACCGA	1 cut(s)	176
TasI	AATT	5 cut(s)	8, 138, 251, 436, 499
TauI	GCSGC	1 cut(s)	323
Tru1I	TTAA	3 cut(s)	84, 429, 444
Tru9I	TTAA	3 cut(s)	84, 429, 444
TscAI	CASTG	1 cut(s)	538
TseI	GCWGC	1 cut(s)	550
TspDTI	ATGAA	1 cut(s)	29
TspGWI	ACGGA	1 cut(s)	467
TspRI	CASTG	1 cut(s)	538
XapI	RAATTY	1 cut(s)	499
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.