Rw7G039700

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
61149558 .. 61151101
1544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G039700.1

Sequence Viewer

Length: 1452 bp
ATGGCTTCCAAAGCGTCAGAGAAGCCACATGCTGTTTGCATACCATACCCAGCTCAAGGTCACATAAACCCAATGCTAAAATTGGCTAAACTCCTTCACTACAAAGGGTTTCATATAACCTTTGTCAACACAGTCTACAACCATGAGCGCCTGCTTAAATCCCGAGGCCCAGCCAAATCCCTTGATGGACTTCCTTCCTTTAGGTTCAAGACAATTCCGGATGGCCTCCCTCCCACTGATGTCAATGCCACCCAGCACATACCATCCCTATGTTATTCCACTAGTAAAAACTGCTTAGCACCCTTCAGAAGCCTTCTTTCAGAACTCAATTCTTTGCCGAACTCCCCTCCTGTTACTTGCATAGTTGCTGATGGTGGCATGACCTTCACTCTTGATGTAGCCCAAGAGCTTGGCCTTCCGGAAGTTCTCCTCGAGACACAAAGTGCTTGTGGCTTCTTGTGCTGCCTTCACTATGCCCATCTCATTGAAAAGCGTCTTACTCCCCTTAAAGATGCCAGTTATTTGACAAATGGCTATTTGGACACTGTGATAGATTGGATACCCGGCATTAGAAGTATCCGTTTGAAGGACATACCGACCTTCATTAGAACCACAGACCCAGAAGACATCATGTTGAAATATCTTGTGGTTGAGATGGAAAGAGCTCAGAGAGCGTCTGCTATCGTTATTAACACATTCAATGCGTTGGACCATGATGTTTTGGAAGCACTTTCAAGATTGCTACCACCTGTTTACTCCATTGGATCTCTACACCTACAAGTCAATCAGATCCCAGCAGATAACGATTTGAAGTCAATTGGCTCAAACCTATGGAGAGAAGAACCAGAGTGTCTCGAATGGCTCGACTCCAAATCACCAAATTCTGTGATTTACGTAAGCTTTGGAAGTATCACAGTGATGAAAGACGAGCAGCTGATTGAGTTTGCTTGGGGTCTTGCAAATAGCAACATAACCTTTTTGTGGATAATTAGGCCTGATCTTGTTGCTGGGGAATTAGCAGTGCTTCCTCCCGAGTTTGTGGAAGAGACCAAGGGAAGGAGTATGTTGGCGAGTTGGTGCTCTCAAGAACAAGTGTTGAACCACCCAGCTGTAGGAGGGTTCTTGACACACAGTGGATGGAACTCTACGATAGAAAGTGTGTGCGCTGGAGTTCCCATGATATGCTGGCCCTTCTTTGCTGACCAACAAACAAATTGTAGGTTCTGTTGCAAAGAATGGGGTATAGGCATGGAGATAGATGGTGATGTTAAAAGGAATTACATAGAAGGCCTTGCGAGAAAGTTAATGGAAGGAAAGGAAGGCAAAGAGATGAGGAAGAAAGCCTTGGAATGGAAGAAATTGGCAGAGGAGGCCATCACTTCTCCCAATGGTTCGTCTTTCTTGAATTTGGACGAGTTGGTCAACCAGAAGCTTCTTTCTCCTGAAAATTAG

Protein Analysis

483

Amino Acids

53.87

Weight (kDa)

5.62

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 12 - 110 4e-08 Glycosyltransferase, N-terminal domain
UDPGT PF00201 284 - 415 8e-26 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22340 AT1G22360 AT1G22360 AT1G22370 AT1G22370 AT1G22380 AT1G22400 AT1G78270
fragaria_vesca FvH4_5g36970 FvH4_5g36972 FvH4_5g36980 FvH4_5g37000 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020
malus_domestica MD08G1185000.v1.1 MD08G1185500.v1.1 MD08G1185600.v1.1 MD08G1185700.v1.1 MD15G1371800.v1.1
prunus_persica Prupe.1G519500_v2.0.a1 Prupe.1G519600_v2.0.a1 Prupe.1G519700_v2.0.a1 Prupe.1G519800_v2.0.a1 Prupe.1G519900_v2.0.a1 Prupe.1G520000_v2.0.a1 Prupe.1G520100_v2.0.a1 Prupe.1G520200_v2.0.a1 Prupe.1G520300_v2.0.a1 Prupe.1G520400_v2.0.a1 Prupe.1G520400_v2.0.a1
pyrus_communis pycom08g15890 pycom08g15930 pycom15g33310
rosa_chinensis RchiOBHm_Chr7g0231031 RchiOBHm_Chr7g0231091 RchiOBHm_Chr7g0243731 RchiOBHm_Chr7g0243761 RchiOBHm_Chr7g0243781 RchiOBHm_Chr7g0243791 RchiOBHm_Chr7g0243821
rosa_laevigata RLG00000000832 RLG00000000834 RLG00000000835 RLG00000000836 RLG00000000837 RLG00000000838 RLG00000001435 RLG00000001436 RLG00000001650
rosa_multiflora Rmu_co8142950.1_g000001 Rmu_sc0000780.1_g000001 Rmu_sc0000780.1_g000003 Rmu_sc0000780.1_g000006 Rmu_sc0000780.1_g000007 Rmu_sc0012403.1_g000014
rosa_roxburghii Rroxscaffold_3G00221740 Rroxscaffold_3G00221770 Rroxscaffold_3G00221810 Rroxscaffold_3G00221820
rosa_rugosa Rorug07G0264200 Rorug07G0264400 Rorug07G0321000 Rorug07G0321300 Rorug07G0321600 Rorug07G0321700 Rorug07G0321800
rosa_samantha Rh7CG437000 Rh7CG437300 Rh7CG493400 Rh7CG493800 Rh7CG494000 Rh7CG494500
rosa_wichuraiana Rw7G034550 Rw7G039670 Rw7G039680 Rw7G039690 Rw7G039700 Rw7G039740 Rw7G039750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1418
AccI GTMKAC 1 cut(s) 135
AccIII TCCGGA 2 cut(s) 217, 418
AclWI GGATC 2 cut(s) 772, 784
AcsI RAATTY 2 cut(s) 880, 1405
AcuI CTGAAG 1 cut(s) 289
AdeI CACNNNGTG 2 cut(s) 443, 1133
AfiI CCNNNNNNNGG 6 cut(s) 56, 586, 981, 1056, 1112, 1350
AgsI TTSAA 9 cut(s) 208, 488, 586, 637, 700, 735, 811, 1099, 1405
AhlI ACTAGT 1 cut(s) 281
AjuI GAANNNNNNNTTGG 2 cut(s) 1328, 1360
AluBI AGCT 7 cut(s) 53, 409, 665, 900, 934, 1109, 1432
AluI AGCT 7 cut(s) 53, 409, 665, 900, 934, 1109, 1432
Alw21I GWGCWC 2 cut(s) 667, 1082
Alw26I GTCTC 3 cut(s) 428, 857, 1040
AlwI GGATC 2 cut(s) 772, 784
Ama87I CYCGRG 3 cut(s) 162, 431, 1031
Aor13HI TCCGGA 2 cut(s) 217, 418
AoxI GGCC 7 cut(s) 166, 223, 412, 992, 1187, 1288, 1371
ApeKI GCWGC 2 cut(s) 462, 931
ApoI RAATTY 2 cut(s) 880, 1405
AspLEI GCGC 2 cut(s) 150, 1166
AspS9I GGNCC 3 cut(s) 167, 709, 1188
AsuC2I CCSGG 1 cut(s) 564
AsuHPI GGTGA 2 cut(s) 867, 1274
AvaI CYCGRG 3 cut(s) 162, 431, 1031
AvaII GGWCC 1 cut(s) 709
BanII GRGCYC 1 cut(s) 667
BbsI GAAGAC 1 cut(s) 630
Bbv12I GWGCWC 2 cut(s) 667, 1082
BbvI GCAGC 2 cut(s) 449, 943
BccI CCATC 9 cut(s) 179, 215, 271, 365, 486, 649, 1131, 1253, 1382
BciVI GTATCC 2 cut(s) 552, 587
BcnI CCSGG 1 cut(s) 564
BcoDI GTCTC 3 cut(s) 428, 857, 1040
BcuI ACTAGT 1 cut(s) 281
BfaI CTAG 1 cut(s) 282
BfmI CTRYAG 1 cut(s) 1110
BfoI RGCGCY 1 cut(s) 151
BfuI GTATCC 2 cut(s) 552, 587
BisI GCNGC 2 cut(s) 463, 932
BlpI GCTNAGC 1 cut(s) 295
BlsI GCNGC 2 cut(s) 464, 933
Bme1390I CCNGG 1 cut(s) 564
Bme18I GGWCC 1 cut(s) 709
BmeT110I CYCGRG 3 cut(s) 162, 431, 1031
BmgT120I GGNCC 3 cut(s) 167, 709, 1188
BmrFI CCNGG 1 cut(s) 564
BmsI GCATC 1 cut(s) 502
BpiI GAAGAC 1 cut(s) 630
BpmI CTGGAG 1 cut(s) 1188
Bpu1102I GCTNAGC 1 cut(s) 295
BpuEI CTTGAG 2 cut(s) 39, 1068
BpuMI CCSGG 1 cut(s) 564
BsaAI YACGTR 1 cut(s) 895
BsaI GGTCTC 1 cut(s) 1040
BsaJI CCNNGG 3 cut(s) 163, 1050, 1344
BsaWI WCCGGW 2 cut(s) 217, 418
Bsc4I CCNNNNNNNGG 6 cut(s) 56, 586, 981, 1056, 1112, 1350
Bse1I ACTGG 1 cut(s) 516
BseAI TCCGGA 2 cut(s) 217, 418
BseDI CCNNGG 3 cut(s) 163, 1050, 1344
BseGI GGATG 3 cut(s) 226, 263, 1142
BseLI CCNNNNNNNGG 6 cut(s) 56, 586, 981, 1056, 1112, 1350
BseMII CTCAG 1 cut(s) 680
BseNI ACTGG 1 cut(s) 516
BseRI GAGGAG 2 cut(s) 419, 1382
BseXI GCAGC 2 cut(s) 449, 943
BseYI CCCAGC 6 cut(s) 49, 169, 252, 793, 1007, 1105
BshFI GGCC 7 cut(s) 168, 225, 414, 994, 1189, 1290, 1373
BsiHKAI GWGCWC 2 cut(s) 667, 1082
BsiHKCI CYCGRG 3 cut(s) 162, 431, 1031
BsiSI CCGG 3 cut(s) 218, 419, 564
BslI CCNNNNNNNGG 6 cut(s) 56, 586, 981, 1056, 1112, 1350
BsmAI GTCTC 3 cut(s) 428, 857, 1040
BsnI GGCC 7 cut(s) 168, 225, 414, 994, 1189, 1290, 1373
Bso31I GGTCTC 1 cut(s) 1040
BsoBI CYCGRG 3 cut(s) 162, 431, 1031
Bsp1286I GDGCHC 2 cut(s) 667, 1082
Bsp13I TCCGGA 2 cut(s) 217, 418
Bsp143I GATC 3 cut(s) 764, 789, 997
Bsp1720I GCTNAGC 1 cut(s) 295
BspANI GGCC 7 cut(s) 168, 225, 414, 994, 1189, 1290, 1373
BspCNI CTCAG 1 cut(s) 679
BspEI TCCGGA 2 cut(s) 217, 418
BspPI GGATC 2 cut(s) 772, 784
BspTNI GGTCTC 1 cut(s) 1040
BsrI ACTGG 1 cut(s) 516
BssECI CCNNGG 3 cut(s) 163, 1050, 1344
BssMI GATC 3 cut(s) 764, 789, 997
BssT1I CCWWGG 2 cut(s) 1050, 1344
Bst4CI ACNGT 4 cut(s) 133, 547, 916, 1133
Bst6I CTCTTC 1 cut(s) 1038
BstBAI YACGTR 1 cut(s) 895
BstC8I GCNNGC 2 cut(s) 152, 1187
BstDEI CTNAG 2 cut(s) 295, 666
BstF5I GGATG 3 cut(s) 226, 263, 1142
BstH2I RGCGCY 1 cut(s) 151
BstHHI GCGC 2 cut(s) 150, 1166
BstKTI GATC 3 cut(s) 767, 792, 1000
BstMAI GTCTC 3 cut(s) 428, 857, 1040
BstMBI GATC 3 cut(s) 764, 789, 997
BstMWI GCNNNNNNNGC 4 cut(s) 11, 459, 671, 1370
BstNSI RCATGY 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 562
BstSFI CTRYAG 1 cut(s) 1110
BstSNI TACGTA 1 cut(s) 895
BstV1I GCAGC 2 cut(s) 449, 943
BstV2I GAAGAC 1 cut(s) 630
BstX2I RGATCY 2 cut(s) 764, 789
BstXI CCANNNNNNTGG 1 cut(s) 410
BstYI RGATCY 2 cut(s) 764, 789
BsuI GTATCC 2 cut(s) 552, 587
BsuRI GGCC 7 cut(s) 168, 225, 414, 994, 1189, 1290, 1373
BtsCI GGATG 3 cut(s) 226, 263, 1142
BtsI GCAGTG 1 cut(s) 1026
BtsIMutI CAGTG 5 cut(s) 234, 543, 921, 1026, 1138
Cac8I GCNNGC 2 cut(s) 152, 1187
CfoI GCGC 2 cut(s) 150, 1166
Cfr13I GGNCC 3 cut(s) 167, 709, 1188
CseI GACGC 3 cut(s) 3, 482, 663
CviAII CATG 7 cut(s) 29, 143, 379, 631, 713, 1177, 1249
DdeI CTNAG 2 cut(s) 295, 666
DpnI GATC 3 cut(s) 766, 791, 999
DpnII GATC 3 cut(s) 764, 789, 997
DraIII CACNNNGTG 2 cut(s) 443, 1133
DrdI GACNNNNNNGTC 1 cut(s) 1418
DseDI GACNNNNNNGTC 1 cut(s) 1418
Eam1104I CTCTTC 1 cut(s) 1038
EarI CTCTTC 1 cut(s) 1038
Ecl136II GAGCTC 1 cut(s) 665
Eco105I TACGTA 1 cut(s) 895
Eco130I CCWWGG 2 cut(s) 1050, 1344
Eco147I AGGCCT 2 cut(s) 994, 1290
Eco24I GRGCYC 1 cut(s) 667
Eco31I GGTCTC 1 cut(s) 1040
Eco47I GGWCC 1 cut(s) 709
Eco53kI GAGCTC 1 cut(s) 665
Eco57I CTGAAG 1 cut(s) 289
Eco88I CYCGRG 3 cut(s) 162, 431, 1031
EcoICRI GAGCTC 1 cut(s) 665
EcoT14I CCWWGG 2 cut(s) 1050, 1344
EcoT38I GRGCYC 1 cut(s) 667
ErhI CCWWGG 2 cut(s) 1050, 1344
FaeI CATG 7 cut(s) 32, 146, 382, 634, 716, 1180, 1252
FalI AAGNNNNNCTT 2 cut(s) 1328, 1360
FatI CATG 7 cut(s) 28, 142, 378, 630, 712, 1176, 1248
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 463, 932
FokI GGATG 3 cut(s) 233, 250, 1149
FriOI GRGCYC 1 cut(s) 667
Fsp4HI GCNGC 2 cut(s) 463, 932
FspBI CTAG 1 cut(s) 282
GlaI GCGC 2 cut(s) 149, 1165
GluI GCNGC 2 cut(s) 463, 932
GsaI CCCAGC 6 cut(s) 53, 173, 256, 797, 1011, 1109
GsuI CTGGAG 1 cut(s) 1188
HaeII RGCGCY 1 cut(s) 151
HaeIII GGCC 7 cut(s) 168, 225, 414, 994, 1189, 1290, 1373
HapII CCGG 3 cut(s) 218, 419, 564
HgaI GACGC 3 cut(s) 3, 482, 663
HhaI GCGC 2 cut(s) 150, 1166
Hin1II CATG 7 cut(s) 32, 146, 382, 634, 716, 1180, 1252
Hin6I GCGC 2 cut(s) 148, 1164
HinP1I GCGC 2 cut(s) 148, 1164
HincII GTYRAC 2 cut(s) 127, 1423
HindII GTYRAC 2 cut(s) 127, 1423
HindIII AAGCTT 2 cut(s) 898, 1430
HinfI GANTC 1 cut(s) 866
HpaII CCGG 3 cut(s) 218, 419, 564
HphI GGTGA 2 cut(s) 867, 1274
Hpy166II GTNNAC 4 cut(s) 127, 136, 754, 1423
Hpy188I TCNGA 5 cut(s) 19, 308, 322, 669, 789
Hpy8I GTNNAC 4 cut(s) 127, 136, 754, 1423
HpyCH4III ACNGT 4 cut(s) 133, 547, 916, 1133
HpyCH4IV ACGT 1 cut(s) 894
HpyCH4V TGCA 4 cut(s) 39, 360, 959, 1230
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 459, 671, 1370
HpyF3I CTNAG 2 cut(s) 295, 666
HpySE526I ACGT 1 cut(s) 894
Hsp92II CATG 7 cut(s) 32, 146, 382, 634, 716, 1180, 1252
HspAI GCGC 2 cut(s) 148, 1164
Kpn2I TCCGGA 2 cut(s) 217, 418
Kzo9I GATC 3 cut(s) 764, 789, 997
Lsp1109I GCAGC 2 cut(s) 449, 943
LweI GCATC 1 cut(s) 502
MaeI CTAG 1 cut(s) 282
MaeII ACGT 1 cut(s) 894
MaeIII GTNAC 2 cut(s) 59, 352
MalI GATC 3 cut(s) 766, 791, 999
MboI GATC 3 cut(s) 764, 789, 997
MboII GAAGA 5 cut(s) 635, 851, 1055, 1348, 1366
MfeI CAATTG 1 cut(s) 816
MflI RGATCY 2 cut(s) 764, 789
MhlI GDGCHC 2 cut(s) 667, 1082
MlyI GAGTC 1 cut(s) 860
MmeI TCCRAC 1 cut(s) 687
MroI TCCGGA 2 cut(s) 217, 418
MseI TTAA 5 cut(s) 156, 507, 690, 1269, 1304
MslI CAYNNNNRTG 2 cut(s) 268, 917
MspA1I CMGCKG 2 cut(s) 934, 1109
MspI CCGG 3 cut(s) 218, 419, 564
MspR9I CCNGG 1 cut(s) 564
MunI CAATTG 1 cut(s) 816
MwoI GCNNNNNNNGC 4 cut(s) 11, 459, 671, 1370
NciI CCSGG 1 cut(s) 564
NdeII GATC 3 cut(s) 764, 789, 997
NlaIII CATG 7 cut(s) 32, 146, 382, 634, 716, 1180, 1252
NmuCI GTSAC 1 cut(s) 59
NspI RCATGY 1 cut(s) 32
PaeR7I CTCGAG 1 cut(s) 431
PceI AGGCCT 2 cut(s) 994, 1290
PcsI WCGNNNNNNNCGW 1 cut(s) 861
PkrI GCNGC 2 cut(s) 464, 933
PleI GAGTC 1 cut(s) 860
PpsI GAGTC 1 cut(s) 860
Ppu21I YACGTR 1 cut(s) 895
Psp124BI GAGCTC 1 cut(s) 667
PspFI CCCAGC 6 cut(s) 49, 169, 252, 793, 1007, 1105
PspPI GGNCC 3 cut(s) 167, 709, 1188
PsuI RGATCY 2 cut(s) 764, 789
PvuII CAGCTG 2 cut(s) 934, 1109
RseI CAYNNNNRTG 2 cut(s) 268, 917
SacI GAGCTC 1 cut(s) 667
SaqAI TTAA 5 cut(s) 156, 507, 690, 1269, 1304
SatI GCNGC 2 cut(s) 463, 932
Sau3AI GATC 3 cut(s) 764, 789, 997
Sau96I GGNCC 3 cut(s) 167, 709, 1188
SchI GAGTC 1 cut(s) 860
ScrFI CCNGG 1 cut(s) 564
SduI GDGCHC 2 cut(s) 667, 1082
SfaNI GCATC 1 cut(s) 502
SfcI CTRYAG 1 cut(s) 1110
Sfr274I CTCGAG 1 cut(s) 431
SinI GGWCC 1 cut(s) 709
SlaI CTCGAG 1 cut(s) 431
SmiMI CAYNNNNRTG 2 cut(s) 268, 917
SmlI CTYRAG 3 cut(s) 54, 431, 1083
SmoI CTYRAG 3 cut(s) 54, 431, 1083
SnaBI TACGTA 1 cut(s) 895
SpeI ACTAGT 1 cut(s) 281
SseBI AGGCCT 2 cut(s) 994, 1290
SspMI CTAG 1 cut(s) 282
SstI GAGCTC 1 cut(s) 667
StuI AGGCCT 2 cut(s) 994, 1290
StyD4I CCNGG 1 cut(s) 562
StyI CCWWGG 2 cut(s) 1050, 1344
TaaI ACNGT 4 cut(s) 133, 547, 916, 1133
TaiI ACGT 1 cut(s) 897
TaqI TCGA 3 cut(s) 432, 855, 864
Tru1I TTAA 5 cut(s) 156, 507, 690, 1269, 1304
Tru9I TTAA 5 cut(s) 156, 507, 690, 1269, 1304
TscAI CASTG 5 cut(s) 241, 550, 921, 1026, 1138
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 2 cut(s) 462, 931
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 3 cut(s) 101, 592, 935
TspGWI ACGGA 1 cut(s) 569
TspRI CASTG 5 cut(s) 241, 550, 921, 1026, 1138
VpaK11BI GGWCC 1 cut(s) 709
XapI RAATTY 2 cut(s) 880, 1405
XceI RCATGY 1 cut(s) 32
XhoI CTCGAG 1 cut(s) 431
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.