Rroxscaffold_3G00221820

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000553
Physical Location & Seq
Reverse (-)
4726596 .. 4731746
5151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00221820.1

Sequence Viewer

Length: 1212 bp
ATGGAACAACAAGTTTCACTCCCTTTCTTAGATGGCCTCCCTCCAACTGATGCAAATGCTACACAACACATACCATCCTTATGTGAATCCACAAAGAAAAACTGCTTGGCTCCCTTCAGAGAACTTCTTTCAAAGCTGAATTCTTCTTCAAACAATAATATCCCTCAGGTAACTTGCATAGTGGCTGATGGTGTCATGAGCTACAGTCTAGACGCTGGTGAAGAACTGGGGATTCCGGTAGTTCTTTTCTGGACACCGAGTGCTTCTGGCTTCATGGGCTACCTTCAGTATCACCGACTCATCCAAGAGGGTCTCACTCCTCTCAAAGATTCCAGCTGTTTGACAAACGGGTATTTGGATACTGTAATAGATTGGATACCAGGCATGAGAGGTATCCGTTTAAAGGACATCCCGAGTTTCATTAGGACAACAGACCCAGATGACATCATGCTGAATTTTCTTGTATATGAGACTGAACGATCTCAAAGAGCTTCTGCTATTATCTTGAACACGTTCTACGACTTGGAGCATGAAGTTCTAGATGCACTGATCCCATCAGATAGCGAGTTGAAGTTGATAGAATCAAACCTATGGATAGAGGAACCGGAATGTCTTGACTGGCTTCACTTTAAAGAACAAAATTCTGTTGTATATGTCAATTTCGGAAGCATTACCGTCATGACAGCCGAGCAGCTAATTGAGTTTGCTTGGGGACTTGCAAACAGCAACAAGCCATTTCTCTGGGTCGTAAGGCCTGACCTTGTTGCTGGGGAATCAGCTGTGCTTCCACCAGAGTTTCTAGAAGAAATCAAAGAAAGGGGGCTATTATCAAGTTGGTGCCCTCAAGAACAAGTTTTGAGCCACCCAGCAATAGGGGGCTTCTTGACACATGGTGGATGGAACTCTACTATTGAAAGTGTGAGTGGTGGAGTGCCCATGATTTGTTGGCCTTTCTTTGCTGAGCAACAAATGAATTGTATGTACTGTTGCAAAGAATGGGGCATAGGCATGGAGATAGAGGGTGAAGTCAGGAGAAATTACATAAACGGGCTTGTGAGAAAGTTGATGGAGGGAGAGGAGGGCAATGAGATGAGGAAGAAAGCCAAGGAATTGAAGAGGTTGGCAGAGGAGGCCTCTAGTGGTCCTAATGGGTTATCATTTTTGAATTTGGAGAAGCTGGTTAACCAGGTGCTTCTGTCTCCCAGAATTTAG

Protein Analysis

403

Amino Acids

45.21

Weight (kDa)

4.68

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 212 - 358 1.4e-26 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22340 AT1G22360 AT1G22360 AT1G22370 AT1G22370 AT1G22380 AT1G22400 AT1G78270
fragaria_vesca FvH4_5g36970 FvH4_5g36972 FvH4_5g36980 FvH4_5g37000 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020
malus_domestica MD08G1185000.v1.1 MD08G1185500.v1.1 MD08G1185600.v1.1 MD08G1185700.v1.1 MD15G1371800.v1.1
prunus_persica Prupe.1G519500_v2.0.a1 Prupe.1G519600_v2.0.a1 Prupe.1G519700_v2.0.a1 Prupe.1G519800_v2.0.a1 Prupe.1G519900_v2.0.a1 Prupe.1G520000_v2.0.a1 Prupe.1G520100_v2.0.a1 Prupe.1G520200_v2.0.a1 Prupe.1G520300_v2.0.a1 Prupe.1G520400_v2.0.a1 Prupe.1G520400_v2.0.a1
pyrus_communis pycom08g15890 pycom08g15930 pycom15g33310
rosa_chinensis RchiOBHm_Chr7g0231031 RchiOBHm_Chr7g0231091 RchiOBHm_Chr7g0243731 RchiOBHm_Chr7g0243761 RchiOBHm_Chr7g0243781 RchiOBHm_Chr7g0243791 RchiOBHm_Chr7g0243821
rosa_laevigata RLG00000000832 RLG00000000834 RLG00000000835 RLG00000000836 RLG00000000837 RLG00000000838 RLG00000001435 RLG00000001436 RLG00000001650
rosa_multiflora Rmu_co8142950.1_g000001 Rmu_sc0000780.1_g000001 Rmu_sc0000780.1_g000003 Rmu_sc0000780.1_g000006 Rmu_sc0000780.1_g000007 Rmu_sc0012403.1_g000014
rosa_roxburghii Rroxscaffold_3G00221740 Rroxscaffold_3G00221770 Rroxscaffold_3G00221810 Rroxscaffold_3G00221820
rosa_rugosa Rorug07G0264200 Rorug07G0264400 Rorug07G0321000 Rorug07G0321300 Rorug07G0321600 Rorug07G0321700 Rorug07G0321800
rosa_samantha Rh7CG437000 Rh7CG437300 Rh7CG493400 Rh7CG493800 Rh7CG494000 Rh7CG494500
rosa_wichuraiana Rw7G034550 Rw7G039670 Rw7G039680 Rw7G039690 Rw7G039700 Rw7G039740 Rw7G039750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 837
AclWI GGATC 1 cut(s) 544
AcsI RAATTY 5 cut(s) 139, 454, 640, 1165, 1206
AcuI CTGAAG 2 cut(s) 100, 269
AdeI CACNNNGTG 2 cut(s) 260, 893
AfaI GTAC 1 cut(s) 983
AfiI CCNNNNNNNGG 2 cut(s) 403, 872
AflIII ACRYGT 1 cut(s) 510
AgsI TTSAA 7 cut(s) 132, 150, 508, 571, 914, 1114, 1165
AjnI CCWGG 2 cut(s) 379, 1185
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
AluBI AGCT 7 cut(s) 136, 201, 336, 491, 694, 779, 1177
AluI AGCT 7 cut(s) 136, 201, 336, 491, 694, 779, 1177
Alw26I GTCTC 3 cut(s) 317, 464, 1203
AlwI GGATC 1 cut(s) 544
Ama87I CYCGRG 1 cut(s) 412
AoxI GGCC 4 cut(s) 34, 752, 947, 1131
ApeKI GCWGC 1 cut(s) 691
ApoI RAATTY 5 cut(s) 139, 454, 640, 1165, 1206
Asp700I GAANNNNTTC 1 cut(s) 512
AspS9I GGNCC 1 cut(s) 1142
AsuHPI GGTGA 3 cut(s) 230, 284, 1034
AvaI CYCGRG 1 cut(s) 412
AvaII GGWCC 1 cut(s) 1142
AxyI CCTNAGG 1 cut(s) 165
BaeGI GKGCMC 2 cut(s) 842, 936
BanI GGYRCC 1 cut(s) 837
BbvI GCAGC 1 cut(s) 703
BccI CCATC 6 cut(s) 26, 82, 182, 562, 891, 1060
BciT130I CCWGG 2 cut(s) 381, 1187
BciVI GTATCC 3 cut(s) 352, 369, 404
BcoDI GTCTC 3 cut(s) 317, 464, 1203
BfaI CTAG 4 cut(s) 209, 539, 800, 1137
BfmI CTRYAG 1 cut(s) 202
BfuI GTATCC 3 cut(s) 352, 369, 404
BisI GCNGC 1 cut(s) 692
BlpI GCTNAGC 1 cut(s) 960
BlsI GCNGC 1 cut(s) 693
Bme1390I CCNGG 2 cut(s) 381, 1187
Bme18I GGWCC 1 cut(s) 1142
BmeT110I CYCGRG 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 1142
BmiI GGNNCC 3 cut(s) 111, 603, 839
BmrFI CCNGG 2 cut(s) 381, 1187
BmrI ACTGGG 1 cut(s) 236
BmsI GCATC 2 cut(s) 40, 532
BmuI ACTGGG 1 cut(s) 236
BplI GAGNNNNNCTC 2 cut(s) 1118, 1150
Bpu1102I GCTNAGC 1 cut(s) 960
BpuEI CTTGAG 1 cut(s) 828
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 1104
BsaWI WCCGGW 2 cut(s) 235, 604
Bsc4I CCNNNNNNNGG 2 cut(s) 403, 872
Bse1I ACTGG 2 cut(s) 231, 623
Bse21I CCTNAGG 1 cut(s) 165
Bse3DI GCAATG 1 cut(s) 1090
BseBI CCWGG 2 cut(s) 381, 1187
BseDI CCNNGG 1 cut(s) 1104
BseGI GGATG 4 cut(s) 74, 300, 408, 902
BseLI CCNNNNNNNGG 2 cut(s) 403, 872
BseMI GCAATG 1 cut(s) 1090
BseMII CTCAG 2 cut(s) 179, 951
BseNI ACTGG 2 cut(s) 231, 623
BseRI GAGGAG 3 cut(s) 309, 1091, 1142
BseSI GKGCMC 2 cut(s) 842, 936
BseXI GCAGC 1 cut(s) 703
BseYI CCCAGC 2 cut(s) 767, 865
BshFI GGCC 4 cut(s) 36, 754, 949, 1133
BshNI GGYRCC 1 cut(s) 837
BsiHKCI CYCGRG 1 cut(s) 412
BsiSI CCGG 2 cut(s) 236, 605
BslFI GGGAC 1 cut(s) 726
BslI CCNNNNNNNGG 2 cut(s) 403, 872
BsmAI GTCTC 3 cut(s) 317, 464, 1203
BsmFI GGGAC 1 cut(s) 726
BsnI GGCC 4 cut(s) 36, 754, 949, 1133
Bso31I GGTCTC 1 cut(s) 317
BsoBI CYCGRG 1 cut(s) 412
Bsp1286I GDGCHC 2 cut(s) 842, 936
Bsp143I GATC 2 cut(s) 479, 549
Bsp1720I GCTNAGC 1 cut(s) 960
BspANI GGCC 4 cut(s) 36, 754, 949, 1133
BspCNI CTCAG 2 cut(s) 178, 952
BspHI TCATGA 2 cut(s) 195, 678
BspLI GGNNCC 3 cut(s) 111, 603, 839
BspPI GGATC 1 cut(s) 544
BspT107I GGYRCC 1 cut(s) 837
BspTNI GGTCTC 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 1090
BsrI ACTGG 2 cut(s) 231, 623
BssECI CCNNGG 1 cut(s) 1104
BssMI GATC 2 cut(s) 479, 549
BssT1I CCWWGG 1 cut(s) 1104
Bst2UI CCWGG 2 cut(s) 381, 1187
Bst4CI ACNGT 4 cut(s) 206, 364, 676, 986
Bst6I CTCTTC 1 cut(s) 1109
BstDEI CTNAG 3 cut(s) 28, 165, 960
BstF5I GGATG 4 cut(s) 74, 300, 408, 902
BstKTI GATC 2 cut(s) 482, 552
BstMAI GTCTC 3 cut(s) 317, 464, 1203
BstMBI GATC 2 cut(s) 479, 549
BstMWI GCNNNNNNNGC 2 cut(s) 276, 1130
BstNI CCWGG 2 cut(s) 381, 1187
BstSCI CCNGG 2 cut(s) 379, 1185
BstSFI CTRYAG 1 cut(s) 202
BstSLI GKGCMC 2 cut(s) 842, 936
BstV1I GCAGC 1 cut(s) 703
BstXI CCANNNNNNTGG 1 cut(s) 741
Bsu36I CCTNAGG 1 cut(s) 165
BsuI GTATCC 3 cut(s) 352, 369, 404
BsuRI GGCC 4 cut(s) 36, 754, 949, 1133
BtsCI GGATG 4 cut(s) 74, 300, 408, 902
BtsIMutI CAGTG 1 cut(s) 545
CciI TCATGA 2 cut(s) 195, 678
Cfr13I GGNCC 1 cut(s) 1142
CseI GACGC 1 cut(s) 221
CsiI ACCWGGT 1 cut(s) 1185
Csp6I GTAC 1 cut(s) 982
CviAII CATG 9 cut(s) 196, 274, 385, 448, 530, 679, 890, 937, 1009
CviQI GTAC 1 cut(s) 982
DdeI CTNAG 3 cut(s) 28, 165, 960
DpnI GATC 2 cut(s) 481, 551
DpnII GATC 2 cut(s) 479, 549
DraI TTTAAA 2 cut(s) 402, 631
DraIII CACNNNGTG 2 cut(s) 260, 893
Eam1104I CTCTTC 1 cut(s) 1109
EarI CTCTTC 1 cut(s) 1109
Eco130I CCWWGG 1 cut(s) 1104
Eco147I AGGCCT 2 cut(s) 754, 1133
Eco31I GGTCTC 1 cut(s) 317
Eco47I GGWCC 1 cut(s) 1142
Eco57I CTGAAG 2 cut(s) 100, 269
Eco81I CCTNAGG 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 412
EcoRI GAATTC 1 cut(s) 139
EcoRII CCWGG 2 cut(s) 379, 1185
EcoT14I CCWWGG 1 cut(s) 1104
ErhI CCWWGG 1 cut(s) 1104
FaeI CATG 9 cut(s) 199, 277, 388, 451, 533, 682, 893, 940, 1012
FaqI GGGAC 1 cut(s) 726
FatI CATG 9 cut(s) 195, 273, 384, 447, 529, 678, 889, 936, 1008
Fnu4HI GCNGC 1 cut(s) 692
FokI GGATG 4 cut(s) 61, 287, 395, 909
Fsp4HI GCNGC 1 cut(s) 692
FspBI CTAG 4 cut(s) 209, 539, 800, 1137
GluI GCNGC 1 cut(s) 692
GsaI CCCAGC 2 cut(s) 771, 869
HaeIII GGCC 4 cut(s) 36, 754, 949, 1133
HapII CCGG 2 cut(s) 236, 605
HgaI GACGC 1 cut(s) 221
Hin1II CATG 9 cut(s) 199, 277, 388, 451, 533, 682, 893, 940, 1012
HincII GTYRAC 1 cut(s) 1183
HindII GTYRAC 1 cut(s) 1183
HinfI GANTC 6 cut(s) 86, 232, 297, 329, 581, 773
HpaI GTTAAC 1 cut(s) 1183
HpaII CCGG 2 cut(s) 236, 605
HphI GGTGA 3 cut(s) 230, 284, 1034
Hpy166II GTNNAC 1 cut(s) 1183
Hpy188I TCNGA 3 cut(s) 119, 559, 665
Hpy8I GTNNAC 1 cut(s) 1183
HpyAV CCTTC 2 cut(s) 124, 293
HpyCH4III ACNGT 4 cut(s) 206, 364, 676, 986
HpyCH4IV ACGT 1 cut(s) 512
HpyCH4V TGCA 5 cut(s) 53, 177, 545, 719, 990
HpyF10VI GCNNNNNNNGC 2 cut(s) 276, 1130
HpyF3I CTNAG 3 cut(s) 28, 165, 960
HpySE526I ACGT 1 cut(s) 512
Hsp92II CATG 9 cut(s) 199, 277, 388, 451, 533, 682, 893, 940, 1012
KspAI GTTAAC 1 cut(s) 1183
Kzo9I GATC 2 cut(s) 479, 549
LmnI GCTCC 2 cut(s) 115, 526
Lsp1109I GCAGC 1 cut(s) 703
LweI GCATC 2 cut(s) 40, 532
MabI ACCWGGT 1 cut(s) 1185
MaeI CTAG 4 cut(s) 209, 539, 800, 1137
MaeII ACGT 1 cut(s) 512
MaeIII GTNAC 1 cut(s) 169
MalI GATC 2 cut(s) 481, 551
MboI GATC 2 cut(s) 479, 549
MboII GAAGA 6 cut(s) 135, 138, 233, 815, 1108, 1126
MhlI GDGCHC 2 cut(s) 842, 936
MlyI GAGTC 1 cut(s) 291
MmeI TCCRAC 1 cut(s) 68
MroXI GAANNNNTTC 1 cut(s) 512
MseI TTAA 3 cut(s) 401, 630, 1182
MslI CAYNNNNRTG 2 cut(s) 79, 1007
MspA1I CMGCKG 2 cut(s) 336, 779
MspI CCGG 2 cut(s) 236, 605
MspR9I CCNGG 2 cut(s) 381, 1187
MvaI CCWGG 2 cut(s) 381, 1187
MwoI GCNNNNNNNGC 2 cut(s) 276, 1130
NdeII GATC 2 cut(s) 479, 549
NlaIII CATG 9 cut(s) 199, 277, 388, 451, 533, 682, 893, 940, 1012
NlaIV GGNNCC 3 cut(s) 111, 603, 839
NmeAIII GCCGAG 1 cut(s) 712
PagI TCATGA 2 cut(s) 195, 678
PceI AGGCCT 2 cut(s) 754, 1133
PdmI GAANNNNTTC 1 cut(s) 512
PfeI GAWTC 5 cut(s) 86, 232, 329, 581, 773
PkrI GCNGC 1 cut(s) 693
PleI GAGTC 1 cut(s) 291
PpsI GAGTC 1 cut(s) 291
Psp6I CCWGG 2 cut(s) 379, 1185
PspFI CCCAGC 2 cut(s) 767, 865
PspGI CCWGG 2 cut(s) 379, 1185
PspN4I GGNNCC 3 cut(s) 111, 603, 839
PspPI GGNCC 1 cut(s) 1142
PsrI GAACNNNNNNTAC 2 cut(s) 500, 532
PvuII CAGCTG 2 cut(s) 336, 779
RsaI GTAC 1 cut(s) 983
RsaNI GTAC 1 cut(s) 982
RseI CAYNNNNRTG 2 cut(s) 79, 1007
SaqAI TTAA 3 cut(s) 401, 630, 1182
SatI GCNGC 1 cut(s) 692
Sau3AI GATC 2 cut(s) 479, 549
Sau96I GGNCC 1 cut(s) 1142
SchI GAGTC 1 cut(s) 291
ScrFI CCNGG 2 cut(s) 381, 1187
SduI GDGCHC 2 cut(s) 842, 936
SexAI ACCWGGT 1 cut(s) 1185
SfaNI GCATC 2 cut(s) 40, 532
SfcI CTRYAG 1 cut(s) 202
SinI GGWCC 1 cut(s) 1142
SmiMI CAYNNNNRTG 2 cut(s) 79, 1007
SmlI CTYRAG 1 cut(s) 843
SmoI CTYRAG 1 cut(s) 843
SseBI AGGCCT 2 cut(s) 754, 1133
SspMI CTAG 4 cut(s) 209, 539, 800, 1137
StuI AGGCCT 2 cut(s) 754, 1133
StyD4I CCNGG 2 cut(s) 379, 1185
StyI CCWWGG 1 cut(s) 1104
TaaI ACNGT 4 cut(s) 206, 364, 676, 986
TaiI ACGT 1 cut(s) 515
TatI WGTACW 1 cut(s) 981
TfiI GAWTC 5 cut(s) 86, 232, 329, 581, 773
Tru1I TTAA 3 cut(s) 401, 630, 1182
Tru9I TTAA 3 cut(s) 401, 630, 1182
TscAI CASTG 1 cut(s) 552
TseI GCWGC 1 cut(s) 691
TspDTI ATGAA 4 cut(s) 262, 409, 546, 986
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 1 cut(s) 552
VpaK11BI GGWCC 1 cut(s) 1142
XapI RAATTY 5 cut(s) 139, 454, 640, 1165, 1206
XbaI TCTAGA 3 cut(s) 208, 538, 799
XmnI GAANNNNTTC 1 cut(s) 512
XspI CTAG 4 cut(s) 209, 539, 800, 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.