Rh7CG494000

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000553
Physical Location & Seq
Forward (+)
66362468 .. 66363355
888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG494000.1

Sequence Viewer

Length: 888 bp
ATGAAAGGAATCCAATTGAAGGATATCCCAACCTTCATTAGAACCACTGACCCAAATGACCCCATTCTGCACGTGATTTTGCACGATACAGAACAAGTTCAAAGAGCTTCTGCTATCATTTTGAATACGTTTGATGCCTTAGAGCATGAAGTTCTCGAGGCAATTTCGCATTCGCTACCACCTGTATACTCCATTGGACCCCTGTACCTACAACTTAATCAGATACCAGCTGAAGATAACACCTTCAAGTTGACTGGAGCAAGTCTATGGAGAGAAGAACCAGACTGTTTTGAATGGCTTGACTCTAAAGAACCTAGTTCTGTGATTTATGTCAACTTTGGAAGCAGCACAGTCATGACAGATGAGCAGCTAATTGAATTCGCTTGGGGCCTTGCAGACAGCTGCAACACCTTTTTTTGGGTCATTAGGCCTAACCTTGTTGGGGGAGAATCACCTGTGGTTCCACCAGAGTTTATAGAACAGACTAAGGACAGGGGTCTACTGGCAAGCTGGTGCTGTCAAGAACAAGTCTTGAGCCACCCAGCTATAGGAGGGTTCTTGACGCATAGTGGGTGGAACTCAACCATTGAAAGTGTGTGCGGTGGAGTGCCGATGATCTGTTGGCCCTTCAATGGCGAGCAACAAACCAACTGTAGGTACTGTTCCAAAGAATGGGGCATAGGCATGGAGATGGAGGGTGATGTTAAAAGAAACTACATAGAAAGCCTTGTGAGGGAGTTAATGGAGGAAAATGAAGGAAAAGAGATGAGGAAGAAATCCATGGAATGGAAGAAGTTGGCAGAGAAGGCCACTACAGGTCCTCATGGATTATCTTTCTTGGATTTGGACAAAATGGTTAATCAGGTGCTGCTATCTCCAAAAGATTAG

Protein Analysis

295

Amino Acids

33.31

Weight (kDa)

4.74

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 102 - 255 1.1e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22340 AT1G22360 AT1G22360 AT1G22370 AT1G22370 AT1G22380 AT1G22400 AT1G78270
fragaria_vesca FvH4_5g36970 FvH4_5g36972 FvH4_5g36980 FvH4_5g37000 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020
malus_domestica MD08G1185000.v1.1 MD08G1185500.v1.1 MD08G1185600.v1.1 MD08G1185700.v1.1 MD15G1371800.v1.1
prunus_persica Prupe.1G519500_v2.0.a1 Prupe.1G519600_v2.0.a1 Prupe.1G519700_v2.0.a1 Prupe.1G519800_v2.0.a1 Prupe.1G519900_v2.0.a1 Prupe.1G520000_v2.0.a1 Prupe.1G520100_v2.0.a1 Prupe.1G520200_v2.0.a1 Prupe.1G520300_v2.0.a1 Prupe.1G520400_v2.0.a1 Prupe.1G520400_v2.0.a1
pyrus_communis pycom08g15890 pycom08g15930 pycom15g33310
rosa_chinensis RchiOBHm_Chr7g0231031 RchiOBHm_Chr7g0231091 RchiOBHm_Chr7g0243731 RchiOBHm_Chr7g0243761 RchiOBHm_Chr7g0243781 RchiOBHm_Chr7g0243791 RchiOBHm_Chr7g0243821
rosa_laevigata RLG00000000832 RLG00000000834 RLG00000000835 RLG00000000836 RLG00000000837 RLG00000000838 RLG00000001435 RLG00000001436 RLG00000001650
rosa_multiflora Rmu_co8142950.1_g000001 Rmu_sc0000780.1_g000001 Rmu_sc0000780.1_g000003 Rmu_sc0000780.1_g000006 Rmu_sc0000780.1_g000007 Rmu_sc0012403.1_g000014
rosa_roxburghii Rroxscaffold_3G00221740 Rroxscaffold_3G00221770 Rroxscaffold_3G00221810 Rroxscaffold_3G00221820
rosa_rugosa Rorug07G0264200 Rorug07G0264400 Rorug07G0321000 Rorug07G0321300 Rorug07G0321600 Rorug07G0321700 Rorug07G0321800
rosa_samantha Rh7CG437000 Rh7CG437300 Rh7CG493400 Rh7CG493800 Rh7CG494000 Rh7CG494500
rosa_wichuraiana Rw7G034550 Rw7G039670 Rw7G039680 Rw7G039690 Rw7G039700 Rw7G039740 Rw7G039750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 672, 786
AccI GTMKAC 2 cut(s) 186, 499
AciI CCGC 1 cut(s) 600
AcsI RAATTY 1 cut(s) 377
AcuI CTGAAG 1 cut(s) 252
AcvI CACGTG 1 cut(s) 73
AfaI GTAC 2 cut(s) 206, 659
AfiI CCNNNNNNNGG 9 cut(s) 19, 417, 442, 548, 632, 654, 672, 733, 786
AgsI TTSAA 8 cut(s) 19, 101, 124, 247, 293, 377, 590, 631
AluBI AGCT 6 cut(s) 107, 230, 370, 402, 510, 545
AluI AGCT 6 cut(s) 107, 230, 370, 402, 510, 545
AlwNI CAGNNNCTG 1 cut(s) 868
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 4 cut(s) 388, 428, 623, 807
ApeKI GCWGC 4 cut(s) 345, 367, 402, 868
ApoI RAATTY 1 cut(s) 377
Asp700I GAANNNNTTC 1 cut(s) 96
AspS9I GGNCC 4 cut(s) 197, 388, 624, 818
AsuHPI GGTGA 2 cut(s) 444, 710
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 2 cut(s) 197, 818
BaeI ACNNNNGTAYC 2 cut(s) 188, 221
BbrPI CACGTG 1 cut(s) 73
BbvI GCAGC 4 cut(s) 357, 379, 389, 855
BccI CCATC 1 cut(s) 685
BfaI CTAG 1 cut(s) 315
BfmI CTRYAG 3 cut(s) 546, 652, 813
BisI GCNGC 4 cut(s) 346, 368, 403, 869
BlsI GCNGC 4 cut(s) 347, 369, 404, 870
Bme18I GGWCC 2 cut(s) 197, 818
BmeT110I CYCGRG 1 cut(s) 155
BmgT120I GGNCC 4 cut(s) 197, 388, 624, 818
BmiI GGNNCC 3 cut(s) 199, 389, 462
BmsI GCATC 1 cut(s) 124
BoxI GACNNNNGTC 1 cut(s) 495
BpmI CTGGAG 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 553
BsaAI YACGTR 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 780
Bsc4I CCNNNNNNNGG 9 cut(s) 19, 417, 442, 548, 632, 654, 672, 733, 786
Bse1I ACTGG 2 cut(s) 259, 507
BseDI CCNNGG 1 cut(s) 780
BseLI CCNNNNNNNGG 9 cut(s) 19, 417, 442, 548, 632, 654, 672, 733, 786
BseNI ACTGG 2 cut(s) 259, 507
BseXI GCAGC 4 cut(s) 357, 379, 389, 855
BseYI CCCAGC 1 cut(s) 541
BsgI GTGCAG 1 cut(s) 53
BshFI GGCC 4 cut(s) 390, 430, 625, 809
BsiHKCI CYCGRG 1 cut(s) 155
BslI CCNNNNNNNGG 9 cut(s) 19, 417, 442, 548, 632, 654, 672, 733, 786
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 4 cut(s) 390, 430, 625, 809
BsoBI CYCGRG 1 cut(s) 155
Bsp143I GATC 1 cut(s) 615
Bsp19I CCATGG 1 cut(s) 780
BspACI CCGC 1 cut(s) 600
BspANI GGCC 4 cut(s) 390, 430, 625, 809
BspHI TCATGA 1 cut(s) 354
BspLI GGNNCC 3 cut(s) 199, 389, 462
BsrI ACTGG 2 cut(s) 259, 507
BssECI CCNNGG 1 cut(s) 780
BssMI GATC 1 cut(s) 615
BssNAI GTATAC 1 cut(s) 187
BssT1I CCWWGG 1 cut(s) 780
Bst1107I GTATAC 1 cut(s) 187
Bst4CI ACNGT 4 cut(s) 287, 352, 653, 662
BstBAI YACGTR 1 cut(s) 73
BstC8I GCNNGC 2 cut(s) 508, 638
BstDEI CTNAG 2 cut(s) 139, 486
BstDSI CCRYGG 1 cut(s) 780
BstKTI GATC 1 cut(s) 618
BstMBI GATC 1 cut(s) 615
BstMWI GCNNNNNNNGC 1 cut(s) 806
BstPAI GACNNNNGTC 1 cut(s) 495
BstSFI CTRYAG 3 cut(s) 546, 652, 813
BstV1I GCAGC 4 cut(s) 357, 379, 389, 855
BstZ17I GTATAC 1 cut(s) 187
BsuRI GGCC 4 cut(s) 390, 430, 625, 809
BtgI CCRYGG 1 cut(s) 780
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 508, 638
CaiI CAGNNNCTG 1 cut(s) 868
CciI TCATGA 1 cut(s) 354
Cfr13I GGNCC 4 cut(s) 197, 388, 624, 818
CseI GACGC 1 cut(s) 571
Csp6I GTAC 2 cut(s) 205, 658
CviAII CATG 5 cut(s) 146, 355, 685, 781, 824
CviQI GTAC 2 cut(s) 205, 658
DdeI CTNAG 2 cut(s) 139, 486
DpnI GATC 1 cut(s) 617
DpnII GATC 1 cut(s) 615
Eco130I CCWWGG 1 cut(s) 780
Eco147I AGGCCT 1 cut(s) 430
Eco32I GATATC 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 197, 818
Eco57I CTGAAG 1 cut(s) 252
Eco72I CACGTG 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 155
EcoO109I RGGNCCY 2 cut(s) 388, 818
EcoRI GAATTC 1 cut(s) 377
EcoRV GATATC 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 780
ErhI CCWWGG 1 cut(s) 780
FaeI CATG 5 cut(s) 149, 358, 688, 784, 827
FatI CATG 5 cut(s) 145, 354, 684, 780, 823
FblI GTMKAC 2 cut(s) 186, 499
Fnu4HI GCNGC 4 cut(s) 346, 368, 403, 869
Fsp4HI GCNGC 4 cut(s) 346, 368, 403, 869
FspBI CTAG 1 cut(s) 315
GluI GCNGC 4 cut(s) 346, 368, 403, 869
GsaI CCCAGC 1 cut(s) 545
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 4 cut(s) 390, 430, 625, 809
HgaI GACGC 1 cut(s) 571
Hin1II CATG 5 cut(s) 149, 358, 688, 784, 827
HincII GTYRAC 2 cut(s) 252, 334
HindII GTYRAC 2 cut(s) 252, 334
HinfI GANTC 3 cut(s) 9, 302, 449
HphI GGTGA 2 cut(s) 444, 710
Hpy166II GTNNAC 4 cut(s) 187, 252, 334, 500
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 5 cut(s) 155, 355, 521, 532, 559
Hpy8I GTNNAC 4 cut(s) 187, 252, 334, 500
HpyAV CCTTC 6 cut(s) 13, 43, 253, 637, 749, 799
HpyCH4III ACNGT 4 cut(s) 287, 352, 653, 662
HpyCH4IV ACGT 2 cut(s) 72, 128
HpyCH4V TGCA 4 cut(s) 70, 82, 395, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 806
HpyF3I CTNAG 2 cut(s) 139, 486
HpySE526I ACGT 2 cut(s) 72, 128
Hsp92II CATG 5 cut(s) 149, 358, 688, 784, 827
Kzo9I GATC 1 cut(s) 615
LmnI GCTCC 1 cut(s) 257
Lsp1109I GCAGC 4 cut(s) 357, 379, 389, 855
LweI GCATC 1 cut(s) 124
MaeI CTAG 1 cut(s) 315
MaeII ACGT 2 cut(s) 72, 128
MalI GATC 1 cut(s) 617
MboI GATC 1 cut(s) 615
MboII GAAGA 4 cut(s) 245, 287, 784, 802
MfeI CAATTG 1 cut(s) 14
MluCI AATT 4 cut(s) 14, 162, 372, 377
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 7 cut(s) 151, 545, 688, 726, 739, 762, 831
MroXI GAANNNNTTC 1 cut(s) 96
MseI TTAA 4 cut(s) 216, 705, 740, 858
MslI CAYNNNNRTG 3 cut(s) 353, 683, 689
MspA1I CMGCKG 2 cut(s) 230, 402
MunI CAATTG 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 806
NcoI CCATGG 1 cut(s) 780
NdeII GATC 1 cut(s) 615
NlaIII CATG 5 cut(s) 149, 358, 688, 784, 827
NlaIV GGNNCC 3 cut(s) 199, 389, 462
PaeR7I CTCGAG 1 cut(s) 155
PagI TCATGA 1 cut(s) 354
PceI AGGCCT 1 cut(s) 430
PctI GAATGC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 96
PfeI GAWTC 2 cut(s) 9, 449
PflMI CCANNNNNTGG 2 cut(s) 672, 786
PkrI GCNGC 4 cut(s) 347, 369, 404, 870
PleI GAGTC 1 cut(s) 296
PmaCI CACGTG 1 cut(s) 73
PmlI CACGTG 1 cut(s) 73
PpsI GAGTC 1 cut(s) 296
Ppu21I YACGTR 1 cut(s) 73
PpuMI RGGWCCY 1 cut(s) 818
PshAI GACNNNNGTC 1 cut(s) 495
Psp5II RGGWCCY 1 cut(s) 818
PspCI CACGTG 1 cut(s) 73
PspFI CCCAGC 1 cut(s) 541
PspN4I GGNNCC 3 cut(s) 199, 389, 462
PspPI GGNCC 4 cut(s) 197, 388, 624, 818
PspPPI RGGWCCY 1 cut(s) 818
PsrI GAACNNNNNNTAC 2 cut(s) 646, 678
PstNI CAGNNNCTG 1 cut(s) 868
PvuII CAGCTG 2 cut(s) 230, 402
RsaI GTAC 2 cut(s) 206, 659
RsaNI GTAC 2 cut(s) 205, 658
RseI CAYNNNNRTG 3 cut(s) 353, 683, 689
SaqAI TTAA 4 cut(s) 216, 705, 740, 858
SatI GCNGC 4 cut(s) 346, 368, 403, 869
Sau3AI GATC 1 cut(s) 615
Sau96I GGNCC 4 cut(s) 197, 388, 624, 818
SchI GAGTC 1 cut(s) 296
SfaNI GCATC 1 cut(s) 124
SfcI CTRYAG 3 cut(s) 546, 652, 813
Sfr274I CTCGAG 1 cut(s) 155
SinI GGWCC 2 cut(s) 197, 818
SlaI CTCGAG 1 cut(s) 155
SmiMI CAYNNNNRTG 3 cut(s) 353, 683, 689
SmlI CTYRAG 2 cut(s) 155, 532
SmoI CTYRAG 2 cut(s) 155, 532
Sse9I AATT 4 cut(s) 14, 162, 372, 377
SseBI AGGCCT 1 cut(s) 430
SsiI CCGC 1 cut(s) 600
SspMI CTAG 1 cut(s) 315
StuI AGGCCT 1 cut(s) 430
StyI CCWWGG 1 cut(s) 780
TaaI ACNGT 4 cut(s) 287, 352, 653, 662
TaiI ACGT 2 cut(s) 75, 131
TaqI TCGA 1 cut(s) 156
TasI AATT 4 cut(s) 14, 162, 372, 377
TfiI GAWTC 2 cut(s) 9, 449
Tru1I TTAA 4 cut(s) 216, 705, 740, 858
Tru9I TTAA 4 cut(s) 216, 705, 740, 858
TscAI CASTG 1 cut(s) 52
TseI GCWGC 4 cut(s) 345, 367, 402, 868
TspDTI ATGAA 4 cut(s) 17, 25, 162, 768
TspRI CASTG 1 cut(s) 52
Van91I CCANNNNNTGG 2 cut(s) 672, 786
VpaK11BI GGWCC 2 cut(s) 197, 818
XapI RAATTY 1 cut(s) 377
XhoI CTCGAG 1 cut(s) 155
XmiI GTMKAC 2 cut(s) 186, 499
XmnI GAANNNNTTC 1 cut(s) 96
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.