Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000553

Physical Location & Seq

Genomic Coordinates Reverse (-)

57232368 .. 57232901

Gene Structure 534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG437000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGACCCAAACTCAGCTGATCGAGTTCGCTTGGGGGCTCGCAAACAGCAAGAAGACGTTTCTCGGGGTGATCAGGCCTAACATAGTTAGGGAAGCGTCGGCTGTGGTGCCGGCAGAGTTTGTAGAGGAGACGAGAGAAAGAAGTATGTTGGTCAGTTGGTGTCCTCAGGACCAAGTCCTGAGCCACCCAGCGATCGGAGGGTTCTTGACTCACAGCGGGTGGAACTTGACGGTCGAGAGTGTCTGCGGCGGAGTGTCGATGATCTGCTGGCCTTTCTTCGCCGAGCAACAGACGAACTGCAGGTACTGTTGCAAAGAGTGGGGAATAGGGATGGAGATTGAGGGCGATCCTAAGAGAGATTATATAGAAGGGCTTGTTAGGAAGTTGATGGAGGGAGAAGAAGGGAAAGAGATGAAGAAGAAAGCCCTGGAATGGAAGAGTTTGGCGATGGAGGCCGCCACTGATCCTGAGGGTTCGTCTTTTGTGAACTTGGACAAGAAGGTCAACCAGGTTCTTCTAGCTCCCAGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

177

Amino Acids

19.9

Weight (kDa)

5.55

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	5 - 111	1.1e-18	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22340 AT1G22360 AT1G22360 AT1G22370 AT1G22370 AT1G22380 AT1G22400 AT1G78270
fragaria_vesca	FvH4_5g36970 FvH4_5g36972 FvH4_5g36980 FvH4_5g37000 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020
malus_domestica	MD08G1185000.v1.1 MD08G1185500.v1.1 MD08G1185600.v1.1 MD08G1185700.v1.1 MD15G1371800.v1.1
prunus_persica	Prupe.1G519500_v2.0.a1 Prupe.1G519600_v2.0.a1 Prupe.1G519700_v2.0.a1 Prupe.1G519800_v2.0.a1 Prupe.1G519900_v2.0.a1 Prupe.1G520000_v2.0.a1 Prupe.1G520100_v2.0.a1 Prupe.1G520200_v2.0.a1 Prupe.1G520300_v2.0.a1 Prupe.1G520400_v2.0.a1 Prupe.1G520400_v2.0.a1
pyrus_communis	pycom08g15890 pycom08g15930 pycom15g33310
rosa_chinensis	RchiOBHm_Chr7g0231031 RchiOBHm_Chr7g0231091 RchiOBHm_Chr7g0243731 RchiOBHm_Chr7g0243761 RchiOBHm_Chr7g0243781 RchiOBHm_Chr7g0243791 RchiOBHm_Chr7g0243821
rosa_laevigata	RLG00000000832 RLG00000000834 RLG00000000835 RLG00000000836 RLG00000000837 RLG00000000838 RLG00000001435 RLG00000001436 RLG00000001650
rosa_multiflora	Rmu_co8142950.1_g000001 Rmu_sc0000780.1_g000001 Rmu_sc0000780.1_g000003 Rmu_sc0000780.1_g000006 Rmu_sc0000780.1_g000007 Rmu_sc0012403.1_g000014
rosa_roxburghii	Rroxscaffold_3G00221740 Rroxscaffold_3G00221770 Rroxscaffold_3G00221810 Rroxscaffold_3G00221820
rosa_rugosa	Rorug07G0264200 Rorug07G0264400 Rorug07G0321000 Rorug07G0321300 Rorug07G0321600 Rorug07G0321700 Rorug07G0321800
rosa_samantha	Rh7CG437000 Rh7CG437300 Rh7CG493400 Rh7CG493800 Rh7CG494000 Rh7CG494500
rosa_wichuraiana	Rw7G034550 Rw7G039670 Rw7G039680 Rw7G039690 Rw7G039700 Rw7G039740 Rw7G039750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	500
Acc36I	ACCTGC	1 cut(s)	291
AccB1I	GGYRCC	1 cut(s)	106
AciI	CCGC	4 cut(s)	216, 246, 249, 456
AclWI	GGATC	2 cut(s)	341, 458
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	2 cut(s)	194, 432
AjnI	CCWGG	3 cut(s)	426, 507, 524
AluBI	AGCT	2 cut(s)	16, 521
AluI	AGCT	2 cut(s)	16, 521
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	2 cut(s)	341, 458
AlwNI	CAGNNNCTG	1 cut(s)	306
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	3 cut(s)	74, 269, 453
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	79
AvaI	CYCGRG	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	169
AxyI	CCTNAGG	2 cut(s)	165, 468
BanI	GGYRCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	59
BccI	CCATC	3 cut(s)	325, 382, 442
BciT130I	CCWGG	3 cut(s)	428, 509, 526
BclI	TGATCA	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	518
BfmI	CTRYAG	1 cut(s)	298
BfuAI	ACCTGC	1 cut(s)	291
BisI	GCNGC	2 cut(s)	247, 456
BlsI	GCNGC	2 cut(s)	248, 457
Bme1390I	CCNGG	3 cut(s)	428, 509, 526
Bme18I	GGWCC	1 cut(s)	169
BmeT110I	CYCGRG	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	3 cut(s)	428, 509, 526
BpiI	GAAGAC	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	426, 524
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 432
Bse118I	RCCGGY	1 cut(s)	109
Bse21I	CCTNAGG	2 cut(s)	165, 468
BseBI	CCWGG	3 cut(s)	428, 509, 526
BseDI	CCNNGG	2 cut(s)	426, 524
BseGI	GGATG	1 cut(s)	336
BseLI	CCNNNNNNNGG	2 cut(s)	194, 432
BseMII	CTCAG	4 cut(s)	26, 170, 179, 459
BseRI	GAGGAG	1 cut(s)	140
BseYI	CCCAGC	1 cut(s)	187
Bsh1285I	CGRYCG	2 cut(s)	195, 234
BshFI	GGCC	3 cut(s)	76, 271, 455
BshNI	GGYRCC	1 cut(s)	106
BsiEI	CGRYCG	2 cut(s)	195, 234
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	110
BslI	CCNNNNNNNGG	2 cut(s)	194, 432
BsmAI	GTCTC	1 cut(s)	122
BsmBI	CGTCTC	1 cut(s)	122
BsnI	GGCC	3 cut(s)	76, 271, 455
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	6 cut(s)	18, 69, 192, 261, 346, 463
BspACI	CCGC	4 cut(s)	216, 246, 249, 456
BspANI	GGCC	3 cut(s)	76, 271, 455
BspCNI	CTCAG	4 cut(s)	25, 171, 178, 460
BspLI	GGNNCC	1 cut(s)	108
BspMAI	CTGCAG	1 cut(s)	302
BspMI	ACCTGC	1 cut(s)	291
BspPI	GGATC	2 cut(s)	341, 458
BspT107I	GGYRCC	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	109
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	2 cut(s)	426, 524
BssMI	GATC	6 cut(s)	18, 69, 192, 261, 346, 463
Bst2UI	CCWGG	3 cut(s)	428, 509, 526
Bst4CI	ACNGT	2 cut(s)	232, 308
Bst6I	CTCTTC	1 cut(s)	431
BstC8I	GCNNGC	3 cut(s)	39, 111, 269
BstDEI	CTNAG	5 cut(s)	12, 165, 179, 351, 468
BstF5I	GGATG	1 cut(s)	336
BstKTI	GATC	6 cut(s)	21, 72, 195, 264, 349, 466
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	6 cut(s)	18, 69, 192, 261, 346, 463
BstMCI	CGRYCG	2 cut(s)	195, 234
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNI	CCWGG	3 cut(s)	428, 509, 526
BstSCI	CCNGG	3 cut(s)	426, 507, 524
BstSFI	CTRYAG	1 cut(s)	298
BstV2I	GAAGAC	1 cut(s)	59
Bsu36I	CCTNAGG	2 cut(s)	165, 468
BsuRI	GGCC	3 cut(s)	76, 271, 455
BtgZI	GCGATG	1 cut(s)	461
BtsCI	GGATG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	459
BveI	ACCTGC	1 cut(s)	291
Cac8I	GCNNGC	3 cut(s)	39, 111, 269
CaiI	CAGNNNCTG	1 cut(s)	306
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	169
CseI	GACGC	1 cut(s)	84
CsiI	ACCWGGT	1 cut(s)	507
Csp6I	GTAC	1 cut(s)	304
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	5 cut(s)	12, 165, 179, 351, 468
DpnI	GATC	6 cut(s)	20, 71, 194, 263, 348, 465
DpnII	GATC	6 cut(s)	18, 69, 192, 261, 346, 463
DrdI	GACNNNNNNGTC	1 cut(s)	500
DseDI	GACNNNNNNGTC	1 cut(s)	500
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
EciI	GGCGGA	1 cut(s)	264
Eco147I	AGGCCT	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	169
Eco81I	CCTNAGG	2 cut(s)	165, 468
Eco88I	CYCGRG	1 cut(s)	62
EcoRII	CCWGG	3 cut(s)	426, 507, 524
EcoT38I	GRGCYC	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	122
FaiI	YATR	4 cut(s)	83, 146, 363, 365
FauI	CCCGC	1 cut(s)	209
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	2 cut(s)	247, 456
FokI	GGATG	1 cut(s)	343
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	2 cut(s)	247, 456
FspBI	CTAG	1 cut(s)	518
GluI	GCNGC	2 cut(s)	247, 456
GsaI	CCCAGC	1 cut(s)	191
HaeIII	GGCC	3 cut(s)	76, 271, 455
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	1 cut(s)	84
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HinfI	GANTC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	2 cut(s)	487, 505
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	5 cut(s)	167, 178, 205, 235, 467
Hpy8I	GTNNAC	2 cut(s)	487, 505
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	3 cut(s)	362, 395, 493
HpyCH4III	ACNGT	2 cut(s)	232, 308
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	300, 312
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	5 cut(s)	12, 165, 179, 351, 468
HpySE526I	ACGT	1 cut(s)	56
KroI	GCCGGC	1 cut(s)	109
KroNI	GCCGGC	1 cut(s)	111
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	6 cut(s)	18, 69, 192, 261, 346, 463
LmnI	GCTCC	1 cut(s)	526
MabI	ACCWGGT	1 cut(s)	507
MaeI	CTAG	1 cut(s)	518
MaeII	ACGT	1 cut(s)	56
MalI	GATC	6 cut(s)	20, 71, 194, 263, 348, 465
MboI	GATC	6 cut(s)	18, 69, 192, 261, 346, 463
MboII	GAAGA	7 cut(s)	64, 268, 410, 427, 430, 448, 506
MhlI	GDGCHC	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	202
MnlI	CCTC	7 cut(s)	118, 174, 191, 334, 385, 445, 463
MroNI	GCCGGC	1 cut(s)	109
MspA1I	CMGCKG	2 cut(s)	16, 216
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	3 cut(s)	428, 509, 526
MvaI	CCWGG	3 cut(s)	428, 509, 526
MwoI	GCNNNNNNNGC	1 cut(s)	452
NaeI	GCCGGC	1 cut(s)	111
NdeII	GATC	6 cut(s)	18, 69, 192, 261, 346, 463
NgoMIV	GCCGGC	1 cut(s)	109
NlaIV	GGNNCC	1 cut(s)	108
NmeAIII	GCCGAG	1 cut(s)	307
PceI	AGGCCT	1 cut(s)	76
PdiI	GCCGGC	1 cut(s)	111
PflFI	GACNNNGTC	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	248, 457
Ple19I	CGATCG	1 cut(s)	195
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp6I	CCWGG	3 cut(s)	426, 507, 524
PspFI	CCCAGC	1 cut(s)	187
PspGI	CCWGG	3 cut(s)	426, 507, 524
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	169
PsrI	GAACNNNNNNTAC	2 cut(s)	287, 319
PstI	CTGCAG	1 cut(s)	302
PstNI	CAGNNNCTG	1 cut(s)	306
PsyI	GACNNNGTC	1 cut(s)	173
PvuI	CGATCG	1 cut(s)	195
PvuII	CAGCTG	1 cut(s)	16
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SatI	GCNGC	2 cut(s)	247, 456
Sau3AI	GATC	6 cut(s)	18, 69, 192, 261, 346, 463
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	3 cut(s)	428, 509, 526
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	6 cut(s)	18, 59, 305, 504, 513, 523
SexAI	ACCWGGT	1 cut(s)	507
SfcI	CTRYAG	1 cut(s)	298
SinI	GGWCC	1 cut(s)	169
SseBI	AGGCCT	1 cut(s)	76
SsiI	CCGC	4 cut(s)	216, 246, 249, 456
SspMI	CTAG	1 cut(s)	518
StuI	AGGCCT	1 cut(s)	76
StyD4I	CCNGG	3 cut(s)	426, 507, 524
TaaI	ACNGT	2 cut(s)	232, 308
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	3 cut(s)	21, 234, 257
TauI	GCSGC	2 cut(s)	249, 458
TscAI	CASTG	1 cut(s)	466
TspDTI	ATGAA	1 cut(s)	428
TspRI	CASTG	1 cut(s)	466
Tth111I	GACNNNGTC	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	169
XspI	CTAG	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.