Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000553

Physical Location & Seq

Genomic Coordinates Reverse (-)

33062781 .. 33063663

Gene Structure 883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0321600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCCAAGAGAGGCCACACTATAATCGGCTGCTCCCGTTCTCAAGATAAGCTCACCTTCCTCCAATCCGAACTCTCTGACAAGCACCTATTCCTCAGCGCCGACTTCAGCTCGAATAGCAGCGTCCAAGAGCTGGCTTGGGTTGTGATAAAGAAGAAGGGAGTTCCGAATATCATAATAAACAATGCCGGAGTCATCAACAACAACAACAAGCTATGGGAGGTTCTGGACGAGGAGTTCAACAGCGTCGTCGACACCAATGTCAAGGGGGTCGCGAACGTGTTGCGCCACTTCAATCCTCTGATGCTTAAGAGGGATCCCGATCCAGCCACCGGAATCATAGTCAACATGTCTTCCTGCTGGGGCAGATCCGGTGCCGCACACTTGGCGCCTTACTGTGCCTCCAAATGGGCCGTGGAGGGTTTGACCCAGTCGGTGGCCAAGAAGTTGCTGAAGGACATGGCCATTGTGGCTCTCAACCCGAGGGTTATACACATTGATATGCTTGTTTCCTGCTTTGGGCCGCATAATATGGATAGTTACCCGGAGCCTCGGGTTTGGGCCGTCAAGGCTGCTAGATTAATGATATTGCATCTTACACCAGCTGACAATGGTGCTTCTCTCACTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

210

Amino Acids

23.06

Weight (kDa)

8.91

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	1 - 169	2.4e-29	short chain dehydrogenase
adh_short_C2	PF13561	1 - 168	2.7e-21	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22340 AT1G22360 AT1G22360 AT1G22370 AT1G22370 AT1G22380 AT1G22400 AT1G78270
fragaria_vesca	FvH4_5g36970 FvH4_5g36972 FvH4_5g36980 FvH4_5g37000 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020
malus_domestica	MD08G1185000.v1.1 MD08G1185500.v1.1 MD08G1185600.v1.1 MD08G1185700.v1.1 MD15G1371800.v1.1
prunus_persica	Prupe.1G519500_v2.0.a1 Prupe.1G519600_v2.0.a1 Prupe.1G519700_v2.0.a1 Prupe.1G519800_v2.0.a1 Prupe.1G519900_v2.0.a1 Prupe.1G520000_v2.0.a1 Prupe.1G520100_v2.0.a1 Prupe.1G520200_v2.0.a1 Prupe.1G520300_v2.0.a1 Prupe.1G520400_v2.0.a1 Prupe.1G520400_v2.0.a1
pyrus_communis	pycom08g15890 pycom08g15930 pycom15g33310
rosa_chinensis	RchiOBHm_Chr7g0231031 RchiOBHm_Chr7g0231091 RchiOBHm_Chr7g0243731 RchiOBHm_Chr7g0243761 RchiOBHm_Chr7g0243781 RchiOBHm_Chr7g0243791 RchiOBHm_Chr7g0243821
rosa_laevigata	RLG00000000832 RLG00000000834 RLG00000000835 RLG00000000836 RLG00000000837 RLG00000000838 RLG00000001435 RLG00000001436 RLG00000001650
rosa_multiflora	Rmu_co8142950.1_g000001 Rmu_sc0000780.1_g000001 Rmu_sc0000780.1_g000003 Rmu_sc0000780.1_g000006 Rmu_sc0000780.1_g000007 Rmu_sc0012403.1_g000014
rosa_roxburghii	Rroxscaffold_3G00221740 Rroxscaffold_3G00221770 Rroxscaffold_3G00221810 Rroxscaffold_3G00221820
rosa_rugosa	Rorug07G0264200 Rorug07G0264400 Rorug07G0321000 Rorug07G0321300 Rorug07G0321600 Rorug07G0321700 Rorug07G0321800
rosa_samantha	Rh7CG437000 Rh7CG437300 Rh7CG493400 Rh7CG493800 Rh7CG494000 Rh7CG494500
rosa_wichuraiana	Rw7G034550 Rw7G039670 Rw7G039680 Rw7G039690 Rw7G039700 Rw7G039740 Rw7G039750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AccB1I	GGYRCC	2 cut(s)	374, 388
AccB7I	CCANNNNNTGG	2 cut(s)	133, 436
AccI	GTMKAC	1 cut(s)	252
AccII	CGCG	1 cut(s)	275
AciI	CCGC	2 cut(s)	378, 524
AclWI	GGATC	4 cut(s)	311, 317, 324, 363
AcoI	YGGCCR	3 cut(s)	3, 438, 462
AcuI	CTGAAG	2 cut(s)	91, 473
AcyI	GRCGYC	1 cut(s)	389
AfiI	CCNNNNNNNGG	5 cut(s)	133, 332, 408, 436, 519
AflII	CTTAAG	1 cut(s)	308
AflIII	ACRYGT	2 cut(s)	279, 348
AgsI	TTSAA	2 cut(s)	241, 295
AloI	GAACNNNNNNTCC	2 cut(s)	221, 253
AluBI	AGCT	5 cut(s)	52, 111, 133, 214, 605
AluI	AGCT	5 cut(s)	52, 111, 133, 214, 605
AlwI	GGATC	4 cut(s)	311, 317, 324, 363
Ama87I	CYCGRG	2 cut(s)	481, 552
AoxI	GGCC	7 cut(s)	3, 13, 411, 438, 462, 521, 561
ApeKI	GCWGC	3 cut(s)	30, 120, 572
AseI	ATTAAT	1 cut(s)	581
AspLEI	GCGC	3 cut(s)	101, 288, 391
AspS9I	GGNCC	3 cut(s)	411, 521, 561
AsuC2I	CCSGG	1 cut(s)	545
AsuHPI	GGTGA	1 cut(s)	46
AvaI	CYCGRG	2 cut(s)	481, 552
BalI	TGGCCA	3 cut(s)	5, 440, 464
BamHI	GGATCC	1 cut(s)	316
BanI	GGYRCC	2 cut(s)	374, 388
BbsI	GAAGAC	1 cut(s)	345
BbvCI	CCTCAGC	1 cut(s)	95
BbvI	GCAGC	3 cut(s)	17, 132, 559
BceAI	ACGGC	2 cut(s)	398, 548
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BcnI	CCSGG	1 cut(s)	545
BfaI	CTAG	1 cut(s)	576
BfoI	RGCGCY	2 cut(s)	102, 392
BfrI	CTTAAG	1 cut(s)	308
BglI	GCCNNNNNGGC	2 cut(s)	470, 569
BisI	GCNGC	5 cut(s)	31, 121, 378, 524, 573
BlsI	GCNGC	5 cut(s)	32, 122, 379, 525, 574
Bme1390I	CCNGG	1 cut(s)	545
BmeT110I	CYCGRG	2 cut(s)	481, 552
BmgT120I	GGNCC	3 cut(s)	411, 521, 561
BmiI	GGNNCC	4 cut(s)	318, 376, 390, 549
BmrFI	CCNGG	1 cut(s)	545
BmrI	ACTGGG	1 cut(s)	424
BmsI	GCATC	2 cut(s)	294, 601
BmuI	ACTGGG	1 cut(s)	424
BpiI	GAAGAC	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	545
BsaBI	GATNNNNATC	1 cut(s)	321
BsaHI	GRCGYC	1 cut(s)	389
BsaJI	CCNNGG	3 cut(s)	414, 482, 551
BsaWI	WCCGGW	2 cut(s)	332, 371
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bsc4I	CCNNNNNNNGG	5 cut(s)	133, 332, 408, 436, 519
Bse1I	ACTGG	1 cut(s)	430
Bse8I	GATNNNNATC	1 cut(s)	321
BseDI	CCNNGG	3 cut(s)	414, 482, 551
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	5 cut(s)	133, 332, 408, 436, 519
BseMII	CTCAG	1 cut(s)	109
BseNI	ACTGG	1 cut(s)	430
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	3 cut(s)	17, 132, 559
BseYI	CCCAGC	1 cut(s)	360
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	7 cut(s)	5, 15, 413, 440, 464, 523, 563
BshNI	GGYRCC	2 cut(s)	374, 388
BsiHKCI	CYCGRG	2 cut(s)	481, 552
BsiSI	CCGG	4 cut(s)	189, 333, 372, 545
BslI	CCNNNNNNNGG	5 cut(s)	133, 332, 408, 436, 519
BsnI	GGCC	7 cut(s)	5, 15, 413, 440, 464, 523, 563
BsoBI	CYCGRG	2 cut(s)	481, 552
Bsp143I	GATC	3 cut(s)	316, 322, 368
Bsp68I	TCGCGA	1 cut(s)	275
BspACI	CCGC	2 cut(s)	378, 524
BspANI	GGCC	7 cut(s)	5, 15, 413, 440, 464, 523, 563
BspCNI	CTCAG	1 cut(s)	108
BspFNI	CGCG	1 cut(s)	275
BspLI	GGNNCC	4 cut(s)	318, 376, 390, 549
BspPI	GGATC	4 cut(s)	311, 317, 324, 363
BspT107I	GGYRCC	2 cut(s)	374, 388
BspTI	CTTAAG	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	430
BssECI	CCNNGG	3 cut(s)	414, 482, 551
BssMI	GATC	3 cut(s)	316, 322, 368
BssNI	GRCGYC	1 cut(s)	389
Bst4CI	ACNGT	2 cut(s)	398, 628
BstACI	GRCGYC	1 cut(s)	389
BstAFI	CTTAAG	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	95
BstDSI	CCRYGG	1 cut(s)	414
BstFNI	CGCG	1 cut(s)	275
BstH2I	RGCGCY	2 cut(s)	102, 392
BstHHI	GCGC	3 cut(s)	101, 288, 391
BstKTI	GATC	3 cut(s)	319, 325, 371
BstMBI	GATC	3 cut(s)	316, 322, 368
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 386, 470, 569
BstNSI	RCATGY	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	543
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	3 cut(s)	17, 132, 559
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	2 cut(s)	316, 368
BstYI	RGATCY	2 cut(s)	316, 368
BsuRI	GGCC	7 cut(s)	5, 15, 413, 440, 464, 523, 563
BtgI	CCRYGG	1 cut(s)	414
BtsIMutI	CAGTG	1 cut(s)	624
BtuMI	TCGCGA	1 cut(s)	275
Cac8I	GCNNGC	1 cut(s)	135
CfoI	GCGC	3 cut(s)	101, 288, 391
Cfr13I	GGNCC	3 cut(s)	411, 521, 561
CseI	GACGC	2 cut(s)	112, 235
CviAII	CATG	2 cut(s)	349, 460
DdeI	CTNAG	1 cut(s)	95
DinI	GGCGCC	1 cut(s)	390
DpnI	GATC	3 cut(s)	318, 324, 370
DpnII	GATC	3 cut(s)	316, 322, 368
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
EaeI	YGGCCR	3 cut(s)	3, 438, 462
Eco57I	CTGAAG	2 cut(s)	91, 473
Eco88I	CYCGRG	2 cut(s)	481, 552
EgeI	GGCGCC	1 cut(s)	390
EheI	GGCGCC	1 cut(s)	390
FaeI	CATG	2 cut(s)	352, 463
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FatI	CATG	2 cut(s)	348, 459
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	5 cut(s)	31, 121, 378, 524, 573
Fsp4HI	GCNGC	5 cut(s)	31, 121, 378, 524, 573
FspBI	CTAG	1 cut(s)	576
GlaI	GCGC	3 cut(s)	100, 287, 390
GluI	GCNGC	5 cut(s)	31, 121, 378, 524, 573
GsaI	CCCAGC	1 cut(s)	364
HaeII	RGCGCY	2 cut(s)	102, 392
HaeIII	GGCC	7 cut(s)	5, 15, 413, 440, 464, 523, 563
HapII	CCGG	4 cut(s)	189, 333, 372, 545
HgaI	GACGC	2 cut(s)	112, 235
HhaI	GCGC	3 cut(s)	101, 288, 391
Hin1I	GRCGYC	1 cut(s)	389
Hin1II	CATG	2 cut(s)	352, 463
Hin6I	GCGC	3 cut(s)	99, 286, 389
HinP1I	GCGC	3 cut(s)	99, 286, 389
HincII	GTYRAC	2 cut(s)	253, 346
HindII	GTYRAC	2 cut(s)	253, 346
HinfI	GANTC	2 cut(s)	192, 336
HpaII	CCGG	4 cut(s)	189, 333, 372, 545
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	2 cut(s)	253, 346
Hpy188I	TCNGA	4 cut(s)	70, 79, 168, 303
Hpy188III	TCNNGA	4 cut(s)	44, 227, 274, 320
Hpy8I	GTNNAC	2 cut(s)	253, 346
Hpy99I	CGWCG	2 cut(s)	251, 254
HpyAV	CCTTC	3 cut(s)	67, 151, 448
HpyCH4III	ACNGT	2 cut(s)	398, 628
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	1 cut(s)	592
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 386, 470, 569
HpyF3I	CTNAG	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	389
Hsp92II	CATG	2 cut(s)	352, 463
HspAI	GCGC	3 cut(s)	99, 286, 389
KasI	GGCGCC	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	316, 322, 368
LmnI	GCTCC	2 cut(s)	38, 547
Lsp1109I	GCAGC	3 cut(s)	17, 132, 559
LweI	GCATC	2 cut(s)	294, 601
MaeI	CTAG	1 cut(s)	576
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	539
MalI	GATC	3 cut(s)	318, 324, 370
MboI	GATC	3 cut(s)	316, 322, 368
MboII	GAAGA	2 cut(s)	166, 345
MflI	RGATCY	2 cut(s)	316, 368
MlsI	TGGCCA	3 cut(s)	5, 440, 464
MluNI	TGGCCA	3 cut(s)	5, 440, 464
Mly113I	GGCGCC	1 cut(s)	389
MlyI	GAGTC	1 cut(s)	201
Mox20I	TGGCCA	3 cut(s)	5, 440, 464
MscI	TGGCCA	3 cut(s)	5, 440, 464
MseI	TTAA	2 cut(s)	309, 581
MslI	CAYNNNNRTG	1 cut(s)	500
Msp20I	TGGCCA	3 cut(s)	5, 440, 464
MspA1I	CMGCKG	1 cut(s)	605
MspCI	CTTAAG	1 cut(s)	308
MspI	CCGG	4 cut(s)	189, 333, 372, 545
MspR9I	CCNGG	1 cut(s)	545
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	4 cut(s)	117, 386, 470, 569
NarI	GGCGCC	1 cut(s)	389
NciI	CCSGG	1 cut(s)	545
NdeII	GATC	3 cut(s)	316, 322, 368
NlaIII	CATG	2 cut(s)	352, 463
NlaIV	GGNNCC	4 cut(s)	318, 376, 390, 549
NruI	TCGCGA	1 cut(s)	275
NspI	RCATGY	1 cut(s)	352
PciI	ACATGT	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	336
PflFI	GACNNNGTC	1 cut(s)	430
PflMI	CCANNNNNTGG	2 cut(s)	133, 436
PkrI	GCNGC	5 cut(s)	32, 122, 379, 525, 574
PleI	GAGTC	1 cut(s)	200
PluTI	GGCGCC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	200
PscI	ACATGT	1 cut(s)	348
PshBI	ATTAAT	1 cut(s)	581
PspFI	CCCAGC	1 cut(s)	360
PspN4I	GGNNCC	4 cut(s)	318, 376, 390, 549
PspPI	GGNCC	3 cut(s)	411, 521, 561
PsuI	RGATCY	2 cut(s)	316, 368
PsyI	GACNNNGTC	1 cut(s)	430
PvuII	CAGCTG	1 cut(s)	605
RruI	TCGCGA	1 cut(s)	275
RseI	CAYNNNNRTG	1 cut(s)	500
SalI	GTCGAC	1 cut(s)	251
SaqAI	TTAA	2 cut(s)	309, 581
SatI	GCNGC	5 cut(s)	31, 121, 378, 524, 573
Sau3AI	GATC	3 cut(s)	316, 322, 368
Sau96I	GGNCC	3 cut(s)	411, 521, 561
SchI	GAGTC	1 cut(s)	201
ScrFI	CCNGG	1 cut(s)	545
SetI	ASST	9 cut(s)	54, 59, 90, 113, 135, 216, 225, 282, 607
SfaNI	GCATC	2 cut(s)	294, 601
SfoI	GGCGCC	1 cut(s)	390
SmiMI	CAYNNNNRTG	1 cut(s)	500
SmlI	CTYRAG	2 cut(s)	42, 308
SmoI	CTYRAG	2 cut(s)	42, 308
SsiI	CCGC	2 cut(s)	378, 524
SspDI	GGCGCC	1 cut(s)	388
SspMI	CTAG	1 cut(s)	576
StyD4I	CCNGG	1 cut(s)	543
TaaI	ACNGT	2 cut(s)	398, 628
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	2 cut(s)	113, 252
TauI	GCSGC	2 cut(s)	380, 526
TfiI	GAWTC	1 cut(s)	336
Tru1I	TTAA	2 cut(s)	309, 581
Tru9I	TTAA	2 cut(s)	309, 581
TscAI	CASTG	1 cut(s)	631
TseI	GCWGC	3 cut(s)	30, 120, 572
TspRI	CASTG	1 cut(s)	631
Tth111I	GACNNNGTC	1 cut(s)	430
Van91I	CCANNNNNTGG	2 cut(s)	133, 436
Vha464I	CTTAAG	1 cut(s)	308
VspI	ATTAAT	1 cut(s)	581
XceI	RCATGY	1 cut(s)	352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	412
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.