RLG00000001650

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000553
Physical Location & Seq
Forward (+)
18730330 .. 18731218
889 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001650

Sequence Viewer

Length: 747 bp
ATGAAAGATATCCGTTTGAAGGTTGTTCCAACCTTCATTAGAACCACAGACCCAAATGACAACATTATCGATTTCGTTCTTCACGAAACCGAACGAGCAGCTAAGAAAGCCTCCGCCATCATCTTGAACACATTTGACGACATAGGACACAATGTCCTCGAAGCACTCTCGATCCTCCTACCGCCAGTCTACTCCATTGGACCCCTAAACCTACAAGTCAACCAAGTCCCACCGGACAGTGAGTCACAGACCTTTGGGTCGAATCTGTGGAAGGAAGAGACAGAGGGCCTCGAATGGCTGGACTCTAAAGAGCCCAACTATGTCTTCTACTTCAACTTCGGAAGCATCACAGTGATGACCCAAACTCAGCTTATCGAGTTCGCTTGGTTGCTCGCAAACAGCAAGAAGACACGGTTCTTGACTCACAGCGGGTGGAACTCAACTGGAGGGAGTGTCTGCGGCGGAGTGCCGATGATCTGCTGGCCTTTCTTCGCCGAGCAACAGACGAACTGCAGGTACTGTTGCAAAGAGTGGGGAATAGGGATGGAGATTGAGGGCGATCTTAAGAGAGTTTACATAGAAGGGCTCATGAGGAAGTTGATGGAGGGAGAAGAAGGGAAAGAGATGAAGAAGAAAGCTCTGGAATGGAAGAGGTTGGCAATGGAGGCTGCCACTGGTCCTGAGGGTTCATCTTTTGTGAACATGGACAAGATGGTCAACCAAGTTCTTCTAGCTCCCAGGAAATAA

Protein Analysis

249

Amino Acids

28.11

Weight (kDa)

5.4

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 130 - 204 2.7e-10 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22340 AT1G22360 AT1G22360 AT1G22370 AT1G22370 AT1G22380 AT1G22400 AT1G78270
fragaria_vesca FvH4_5g36970 FvH4_5g36972 FvH4_5g36980 FvH4_5g37000 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020
malus_domestica MD08G1185000.v1.1 MD08G1185500.v1.1 MD08G1185600.v1.1 MD08G1185700.v1.1 MD15G1371800.v1.1
prunus_persica Prupe.1G519500_v2.0.a1 Prupe.1G519600_v2.0.a1 Prupe.1G519700_v2.0.a1 Prupe.1G519800_v2.0.a1 Prupe.1G519900_v2.0.a1 Prupe.1G520000_v2.0.a1 Prupe.1G520100_v2.0.a1 Prupe.1G520200_v2.0.a1 Prupe.1G520300_v2.0.a1 Prupe.1G520400_v2.0.a1 Prupe.1G520400_v2.0.a1
pyrus_communis pycom08g15890 pycom08g15930 pycom15g33310
rosa_chinensis RchiOBHm_Chr7g0231031 RchiOBHm_Chr7g0231091 RchiOBHm_Chr7g0243731 RchiOBHm_Chr7g0243761 RchiOBHm_Chr7g0243781 RchiOBHm_Chr7g0243791 RchiOBHm_Chr7g0243821
rosa_laevigata RLG00000000832 RLG00000000834 RLG00000000835 RLG00000000836 RLG00000000837 RLG00000000838 RLG00000001435 RLG00000001436 RLG00000001650
rosa_multiflora Rmu_co8142950.1_g000001 Rmu_sc0000780.1_g000001 Rmu_sc0000780.1_g000003 Rmu_sc0000780.1_g000006 Rmu_sc0000780.1_g000007 Rmu_sc0012403.1_g000014
rosa_roxburghii Rroxscaffold_3G00221740 Rroxscaffold_3G00221770 Rroxscaffold_3G00221810 Rroxscaffold_3G00221820
rosa_rugosa Rorug07G0264200 Rorug07G0264400 Rorug07G0321000 Rorug07G0321300 Rorug07G0321600 Rorug07G0321700 Rorug07G0321800
rosa_samantha Rh7CG437000 Rh7CG437300 Rh7CG493400 Rh7CG493800 Rh7CG494000 Rh7CG494500
rosa_wichuraiana Rw7G034550 Rw7G039670 Rw7G039680 Rw7G039690 Rw7G039700 Rw7G039740 Rw7G039750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 256, 713
Acc36I ACCTGC 1 cut(s) 504
AccI GTMKAC 1 cut(s) 189
AciI CCGC 5 cut(s) 114, 182, 429, 459, 462
AclWI GGATC 1 cut(s) 166
AfaI GTAC 1 cut(s) 518
AfiI CCNNNNNNNGG 1 cut(s) 19
AflII CTTAAG 1 cut(s) 563
AgsI TTSAA 3 cut(s) 19, 127, 334
AhdI GACNNNNNGTC 2 cut(s) 152, 241
AjnI CCWGG 1 cut(s) 737
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AluBI AGCT 4 cut(s) 101, 370, 638, 734
AluI AGCT 4 cut(s) 101, 370, 638, 734
Alw26I GTCTC 1 cut(s) 272
AlwI GGATC 1 cut(s) 166
AlwNI CAGNNNCTG 1 cut(s) 519
AoxI GGCC 2 cut(s) 286, 482
ApeKI GCWGC 2 cut(s) 98, 668
AspS9I GGNCC 3 cut(s) 200, 286, 677
AvaII GGWCC 2 cut(s) 200, 677
AxyI CCTNAGG 1 cut(s) 681
BanII GRGCYC 2 cut(s) 315, 588
BbsI GAAGAC 2 cut(s) 316, 413
BbvI GCAGC 2 cut(s) 110, 655
BccI CCATC 4 cut(s) 125, 538, 595, 706
BciT130I CCWGG 1 cut(s) 739
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 1 cut(s) 731
BfmI CTRYAG 1 cut(s) 511
BfrI CTTAAG 1 cut(s) 563
BfuAI ACCTGC 1 cut(s) 504
BisI GCNGC 3 cut(s) 99, 460, 669
BlsI GCNGC 3 cut(s) 100, 461, 670
Bme1390I CCNGG 1 cut(s) 739
Bme18I GGWCC 2 cut(s) 200, 677
BmeRI GACNNNNNGTC 2 cut(s) 152, 241
BmgT120I GGNCC 3 cut(s) 200, 286, 677
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 1 cut(s) 739
BmsI GCATC 1 cut(s) 354
BpiI GAAGAC 2 cut(s) 316, 413
BpmI CTGGAG 1 cut(s) 465
Bsa29I ATCGAT 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 737
BsaWI WCCGGW 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 438, 468
Bsc4I CCNNNNNNNGG 1 cut(s) 19
Bse1I ACTGG 3 cut(s) 185, 448, 679
Bse21I CCTNAGG 1 cut(s) 681
Bse3DI GCAATG 1 cut(s) 666
BseBI CCWGG 1 cut(s) 739
BseCI ATCGAT 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 737
BseGI GGATG 1 cut(s) 549
BseLI CCNNNNNNNGG 1 cut(s) 19
BseMI GCAATG 1 cut(s) 666
BseMII CTCAG 2 cut(s) 380, 672
BseNI ACTGG 3 cut(s) 185, 448, 679
BseXI GCAGC 2 cut(s) 110, 655
BshFI GGCC 2 cut(s) 288, 484
BshVI ATCGAT 1 cut(s) 69
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 2 cut(s) 288, 484
Bsp1286I GDGCHC 2 cut(s) 315, 588
Bsp143I GATC 3 cut(s) 171, 474, 559
BspACI CCGC 5 cut(s) 114, 182, 429, 459, 462
BspANI GGCC 2 cut(s) 288, 484
BspCNI CTCAG 2 cut(s) 379, 673
BspDI ATCGAT 1 cut(s) 69
BspHI TCATGA 1 cut(s) 588
BspLI GGNNCC 1 cut(s) 202
BspMAI CTGCAG 1 cut(s) 515
BspMI ACCTGC 1 cut(s) 504
BspPI GGATC 1 cut(s) 166
BspTI CTTAAG 1 cut(s) 563
BsrDI GCAATG 1 cut(s) 666
BsrI ACTGG 3 cut(s) 185, 448, 679
BssECI CCNNGG 1 cut(s) 737
BssMI GATC 3 cut(s) 171, 474, 559
Bst2UI CCWGG 1 cut(s) 739
Bst4CI ACNGT 4 cut(s) 239, 352, 414, 521
Bst6I CTCTTC 2 cut(s) 270, 644
BstAFI CTTAAG 1 cut(s) 563
BstC8I GCNNGC 2 cut(s) 393, 482
BstDEI CTNAG 3 cut(s) 102, 366, 681
BstF5I GGATG 1 cut(s) 549
BstKTI GATC 3 cut(s) 174, 477, 562
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 3 cut(s) 171, 474, 559
BstMWI GCNNNNNNNGC 2 cut(s) 107, 665
BstNI CCWGG 1 cut(s) 739
BstSCI CCNGG 1 cut(s) 737
BstSFI CTRYAG 1 cut(s) 511
BstV1I GCAGC 2 cut(s) 110, 655
BstV2I GAAGAC 2 cut(s) 316, 413
Bsu15I ATCGAT 1 cut(s) 69
Bsu36I CCTNAGG 1 cut(s) 681
BsuRI GGCC 2 cut(s) 288, 484
BsuTUI ATCGAT 1 cut(s) 69
BtsCI GGATG 1 cut(s) 549
BtsIMutI CAGTG 3 cut(s) 244, 357, 672
BveI ACCTGC 1 cut(s) 504
Cac8I GCNNGC 2 cut(s) 393, 482
CaiI CAGNNNCTG 1 cut(s) 519
CciI TCATGA 1 cut(s) 588
Cfr13I GGNCC 3 cut(s) 200, 286, 677
ClaI ATCGAT 1 cut(s) 69
Csp6I GTAC 1 cut(s) 517
CviAII CATG 2 cut(s) 589, 703
CviQI GTAC 1 cut(s) 517
DdeI CTNAG 3 cut(s) 102, 366, 681
DpnI GATC 3 cut(s) 173, 476, 561
DpnII GATC 3 cut(s) 171, 474, 559
DrdI GACNNNNNNGTC 2 cut(s) 256, 713
DriI GACNNNNNGTC 2 cut(s) 152, 241
DseDI GACNNNNNNGTC 2 cut(s) 256, 713
Eam1104I CTCTTC 2 cut(s) 270, 644
Eam1105I GACNNNNNGTC 2 cut(s) 152, 241
EarI CTCTTC 2 cut(s) 270, 644
EciI GGCGGA 2 cut(s) 103, 477
Eco24I GRGCYC 2 cut(s) 315, 588
Eco32I GATATC 1 cut(s) 10
Eco47I GGWCC 2 cut(s) 200, 677
Eco81I CCTNAGG 1 cut(s) 681
EcoO109I RGGNCCY 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 737
EcoRV GATATC 1 cut(s) 10
EcoT38I GRGCYC 2 cut(s) 315, 588
FaeI CATG 2 cut(s) 592, 706
FaiI YATR 5 cut(s) 143, 321, 578, 590, 704
FaqI GGGAC 1 cut(s) 212
FatI CATG 2 cut(s) 588, 702
FauI CCCGC 1 cut(s) 422
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 3 cut(s) 99, 460, 669
FokI GGATG 1 cut(s) 556
FriOI GRGCYC 2 cut(s) 315, 588
Fsp4HI GCNGC 3 cut(s) 99, 460, 669
FspBI CTAG 1 cut(s) 731
GluI GCNGC 3 cut(s) 99, 460, 669
GsuI CTGGAG 1 cut(s) 465
HaeIII GGCC 2 cut(s) 288, 484
HapII CCGG 1 cut(s) 233
Hin1II CATG 2 cut(s) 592, 706
HincII GTYRAC 2 cut(s) 220, 718
HindII GTYRAC 2 cut(s) 220, 718
HinfI GANTC 4 cut(s) 242, 262, 302, 421
HpaII CCGG 1 cut(s) 233
Hpy166II GTNNAC 5 cut(s) 190, 220, 574, 700, 718
Hpy188I TCNGA 1 cut(s) 341
Hpy188III TCNNGA 7 cut(s) 83, 124, 169, 418, 589, 641, 680
Hpy8I GTNNAC 5 cut(s) 190, 220, 574, 700, 718
HpyAV CCTTC 5 cut(s) 13, 43, 265, 575, 608
HpyCH4III ACNGT 4 cut(s) 239, 352, 414, 521
HpyCH4V TGCA 2 cut(s) 513, 525
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 665
HpyF3I CTNAG 3 cut(s) 102, 366, 681
Hsp92II CATG 2 cut(s) 592, 706
Kzo9I GATC 3 cut(s) 171, 474, 559
LmnI GCTCC 1 cut(s) 739
Lsp1109I GCAGC 2 cut(s) 110, 655
LweI GCATC 1 cut(s) 354
MaeI CTAG 1 cut(s) 731
MaeIII GTNAC 1 cut(s) 243
MalI GATC 3 cut(s) 173, 476, 561
MboI GATC 3 cut(s) 171, 474, 559
MhlI GDGCHC 2 cut(s) 315, 588
MlyI GAGTC 3 cut(s) 251, 296, 415
MmeI TCCRAC 1 cut(s) 53
MseI TTAA 1 cut(s) 564
MslI CAYNNNNRTG 2 cut(s) 350, 353
MspA1I CMGCKG 1 cut(s) 429
MspCI CTTAAG 1 cut(s) 563
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 739
MvaI CCWGG 1 cut(s) 739
MwoI GCNNNNNNNGC 2 cut(s) 107, 665
NdeII GATC 3 cut(s) 171, 474, 559
NlaIII CATG 2 cut(s) 592, 706
NlaIV GGNNCC 1 cut(s) 202
NmeAIII GCCGAG 1 cut(s) 520
NmuCI GTSAC 1 cut(s) 243
PagI TCATGA 1 cut(s) 588
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PfeI GAWTC 1 cut(s) 262
PkrI GCNGC 3 cut(s) 100, 461, 670
PleI GAGTC 3 cut(s) 250, 296, 415
PpsI GAGTC 3 cut(s) 250, 296, 415
Psp6I CCWGG 1 cut(s) 737
PspGI CCWGG 1 cut(s) 737
PspN4I GGNNCC 1 cut(s) 202
PspPI GGNCC 3 cut(s) 200, 286, 677
PsrI GAACNNNNNNTAC 2 cut(s) 500, 532
PstI CTGCAG 1 cut(s) 515
PstNI CAGNNNCTG 1 cut(s) 519
RsaI GTAC 1 cut(s) 518
RsaNI GTAC 1 cut(s) 517
RseI CAYNNNNRTG 2 cut(s) 350, 353
SaqAI TTAA 1 cut(s) 564
SatI GCNGC 3 cut(s) 99, 460, 669
Sau3AI GATC 3 cut(s) 171, 474, 559
Sau96I GGNCC 3 cut(s) 200, 286, 677
SchI GAGTC 3 cut(s) 251, 296, 415
ScrFI CCNGG 1 cut(s) 739
SduI GDGCHC 2 cut(s) 315, 588
SfaNI GCATC 1 cut(s) 354
SfcI CTRYAG 1 cut(s) 511
SinI GGWCC 2 cut(s) 200, 677
SmiMI CAYNNNNRTG 2 cut(s) 350, 353
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
SsiI CCGC 5 cut(s) 114, 182, 429, 459, 462
SspMI CTAG 1 cut(s) 731
StyD4I CCNGG 1 cut(s) 737
TaaI ACNGT 4 cut(s) 239, 352, 414, 521
TaqI TCGA 6 cut(s) 69, 159, 170, 260, 291, 375
TauI GCSGC 1 cut(s) 462
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 1 cut(s) 564
Tru9I TTAA 1 cut(s) 564
TscAI CASTG 3 cut(s) 244, 357, 679
TseFI GTSAC 1 cut(s) 243
TseI GCWGC 2 cut(s) 98, 668
Tsp45I GTSAC 1 cut(s) 243
TspDTI ATGAA 4 cut(s) 17, 25, 641, 678
TspRI CASTG 3 cut(s) 244, 357, 679
Vha464I CTTAAG 1 cut(s) 563
VpaK11BI GGWCC 2 cut(s) 200, 677
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.