Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000553

Physical Location & Seq

Genomic Coordinates Reverse (-)

54687738 .. 54688349

Gene Structure 612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20702

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGACCCAAACTCAGCTGATCGAGTTCGCTTGGGGGCTCGCAAACAGCAAGAAGACGTTTCTCGGGGTGATCAGGCCTAACATAGTTAGGGAAGCGTCGGCTGTGGTGCCGGCAGAGTTTGTAGAGGAGACGAGAGAAAGAAGTATGTTGGTCAGTTGGTGTCCTCAGGACCAAGTCCTGAGCCACCCAGCGATCGGAGGGTTCTTGACTCACAGCGGGTGGAACTCGACGGTCGAGAGTGTCTGCGGCGGAGTGCCGATGATCTGCTGGCCTTTCTTCGCCGAGCAACAGACGAACTGCAGGTACTGTTGCAAAGATTGGGGAATAGGGATGGAGATTGAGGGTGATCCTAAGAGAGACTATATAGAAGAGCTTGTGAGGAAGTTGATGGAGGGAGAAGAAGGGAAAGAGATGAAGAAGAAAGCTCTGGAATGGAAGATGTTGGCAATGGAGGCCGTCACTGGTCCTGAGGGTTCGTCTTTTGTGAACTTAGACAAGATGGTCAACCAGGTTCTTCTAGCTCCCAGAAAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

178

Amino Acids

20.12

Weight (kDa)

5.35

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	5 - 113	4.8e-21	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22340 AT1G22360 AT1G22360 AT1G22370 AT1G22370 AT1G22380 AT1G22400 AT1G78270
fragaria_vesca	FvH4_5g36970 FvH4_5g36972 FvH4_5g36980 FvH4_5g37000 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020
malus_domestica	MD08G1185000.v1.1 MD08G1185500.v1.1 MD08G1185600.v1.1 MD08G1185700.v1.1 MD15G1371800.v1.1
prunus_persica	Prupe.1G519500_v2.0.a1 Prupe.1G519600_v2.0.a1 Prupe.1G519700_v2.0.a1 Prupe.1G519800_v2.0.a1 Prupe.1G519900_v2.0.a1 Prupe.1G520000_v2.0.a1 Prupe.1G520100_v2.0.a1 Prupe.1G520200_v2.0.a1 Prupe.1G520300_v2.0.a1 Prupe.1G520400_v2.0.a1 Prupe.1G520400_v2.0.a1
pyrus_communis	pycom08g15890 pycom08g15930 pycom15g33310
rosa_chinensis	RchiOBHm_Chr7g0231031 RchiOBHm_Chr7g0231091 RchiOBHm_Chr7g0243731 RchiOBHm_Chr7g0243761 RchiOBHm_Chr7g0243781 RchiOBHm_Chr7g0243791 RchiOBHm_Chr7g0243821
rosa_laevigata	RLG00000000832 RLG00000000834 RLG00000000835 RLG00000000836 RLG00000000837 RLG00000000838 RLG00000001435 RLG00000001436 RLG00000001650
rosa_multiflora	Rmu_co8142950.1_g000001 Rmu_sc0000780.1_g000001 Rmu_sc0000780.1_g000003 Rmu_sc0000780.1_g000006 Rmu_sc0000780.1_g000007 Rmu_sc0012403.1_g000014
rosa_roxburghii	Rroxscaffold_3G00221740 Rroxscaffold_3G00221770 Rroxscaffold_3G00221810 Rroxscaffold_3G00221820
rosa_rugosa	Rorug07G0264200 Rorug07G0264400 Rorug07G0321000 Rorug07G0321300 Rorug07G0321600 Rorug07G0321700 Rorug07G0321800
rosa_samantha	Rh7CG437000 Rh7CG437300 Rh7CG493400 Rh7CG493800 Rh7CG494000 Rh7CG494500
rosa_wichuraiana	Rw7G034550 Rw7G039670 Rw7G039680 Rw7G039690 Rw7G039700 Rw7G039740 Rw7G039750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	500
Acc36I	ACCTGC	1 cut(s)	291
AccB1I	GGYRCC	1 cut(s)	106
AciI	CCGC	3 cut(s)	216, 246, 249
AclWI	GGATC	1 cut(s)	341
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	1 cut(s)	194
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	4 cut(s)	16, 373, 425, 521
AluI	AGCT	4 cut(s)	16, 373, 425, 521
Alw26I	GTCTC	2 cut(s)	122, 351
AlwI	GGATC	1 cut(s)	341
AlwNI	CAGNNNCTG	1 cut(s)	306
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	3 cut(s)	74, 269, 453
AspS9I	GGNCC	2 cut(s)	169, 464
AsuHPI	GGTGA	2 cut(s)	79, 356
AvaI	CYCGRG	1 cut(s)	62
AvaII	GGWCC	2 cut(s)	169, 464
AxyI	CCTNAGG	2 cut(s)	165, 468
BanI	GGYRCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	59
BccI	CCATC	3 cut(s)	325, 382, 493
BceAI	ACGGC	1 cut(s)	440
BciT130I	CCWGG	1 cut(s)	509
BclI	TGATCA	1 cut(s)	69
BcoDI	GTCTC	2 cut(s)	122, 351
BfaI	CTAG	1 cut(s)	518
BfmI	CTRYAG	1 cut(s)	298
BfuAI	ACCTGC	1 cut(s)	291
BisI	GCNGC	1 cut(s)	247
BlsI	GCNGC	1 cut(s)	248
Bme1390I	CCNGG	1 cut(s)	509
Bme18I	GGWCC	2 cut(s)	169, 464
BmeT110I	CYCGRG	1 cut(s)	62
BmgT120I	GGNCC	2 cut(s)	169, 464
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	509
BpiI	GAAGAC	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse118I	RCCGGY	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	466
Bse21I	CCTNAGG	2 cut(s)	165, 468
Bse3DI	GCAATG	1 cut(s)	453
BseBI	CCWGG	1 cut(s)	509
BseGI	GGATG	1 cut(s)	336
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	4 cut(s)	26, 170, 179, 459
BseNI	ACTGG	1 cut(s)	466
BseRI	GAGGAG	1 cut(s)	140
BseYI	CCCAGC	1 cut(s)	187
Bsh1285I	CGRYCG	2 cut(s)	195, 234
BshFI	GGCC	3 cut(s)	76, 271, 455
BshNI	GGYRCC	1 cut(s)	106
BsiEI	CGRYCG	2 cut(s)	195, 234
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	2 cut(s)	122, 351
BsmBI	CGTCTC	1 cut(s)	122
BsnI	GGCC	3 cut(s)	76, 271, 455
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	5 cut(s)	18, 69, 192, 261, 346
BspACI	CCGC	3 cut(s)	216, 246, 249
BspANI	GGCC	3 cut(s)	76, 271, 455
BspCNI	CTCAG	4 cut(s)	25, 171, 178, 460
BspLI	GGNNCC	1 cut(s)	108
BspMAI	CTGCAG	1 cut(s)	302
BspMI	ACCTGC	1 cut(s)	291
BspPI	GGATC	1 cut(s)	341
BspQI	GCTCTTC	1 cut(s)	363
BspT107I	GGYRCC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	453
BsrFI	RCCGGY	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	466
BssAI	RCCGGY	1 cut(s)	109
BssMI	GATC	5 cut(s)	18, 69, 192, 261, 346
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	2 cut(s)	232, 308
Bst6I	CTCTTC	1 cut(s)	363
BstC8I	GCNNGC	3 cut(s)	39, 111, 269
BstDEI	CTNAG	6 cut(s)	12, 165, 179, 351, 468, 490
BstF5I	GGATG	1 cut(s)	336
BstKTI	GATC	5 cut(s)	21, 72, 195, 264, 349
BstMAI	GTCTC	2 cut(s)	122, 351
BstMBI	GATC	5 cut(s)	18, 69, 192, 261, 346
BstMCI	CGRYCG	2 cut(s)	195, 234
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNI	CCWGG	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	507
BstSFI	CTRYAG	1 cut(s)	298
BstV2I	GAAGAC	1 cut(s)	59
Bsu36I	CCTNAGG	2 cut(s)	165, 468
BsuRI	GGCC	3 cut(s)	76, 271, 455
BtsCI	GGATG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	459
BveI	ACCTGC	1 cut(s)	291
Cac8I	GCNNGC	3 cut(s)	39, 111, 269
CaiI	CAGNNNCTG	1 cut(s)	306
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	2 cut(s)	169, 464
CseI	GACGC	1 cut(s)	84
CsiI	ACCWGGT	1 cut(s)	507
Csp6I	GTAC	1 cut(s)	304
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	6 cut(s)	12, 165, 179, 351, 468, 490
DpnI	GATC	5 cut(s)	20, 71, 194, 263, 348
DpnII	GATC	5 cut(s)	18, 69, 192, 261, 346
DrdI	GACNNNNNNGTC	1 cut(s)	500
DseDI	GACNNNNNNGTC	1 cut(s)	500
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
EciI	GGCGGA	1 cut(s)	264
Eco147I	AGGCCT	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	39
Eco47I	GGWCC	2 cut(s)	169, 464
Eco81I	CCTNAGG	2 cut(s)	165, 468
Eco88I	CYCGRG	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	122
FaiI	YATR	4 cut(s)	83, 146, 363, 365
FauI	CCCGC	1 cut(s)	209
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	247
FokI	GGATG	1 cut(s)	343
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	247
FspBI	CTAG	1 cut(s)	518
GluI	GCNGC	1 cut(s)	247
GsaI	CCCAGC	1 cut(s)	191
HaeIII	GGCC	3 cut(s)	76, 271, 455
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	1 cut(s)	84
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HinfI	GANTC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	2 cut(s)	79, 356
Hpy166II	GTNNAC	2 cut(s)	487, 505
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	6 cut(s)	167, 178, 205, 235, 428, 467
Hpy8I	GTNNAC	2 cut(s)	487, 505
Hpy99I	CGWCG	2 cut(s)	100, 232
HpyAV	CCTTC	1 cut(s)	395
HpyCH4III	ACNGT	2 cut(s)	232, 308
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	300, 312
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	6 cut(s)	12, 165, 179, 351, 468, 490
HpySE526I	ACGT	1 cut(s)	56
KroI	GCCGGC	1 cut(s)	109
KroNI	GCCGGC	1 cut(s)	111
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	5 cut(s)	18, 69, 192, 261, 346
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	1 cut(s)	526
MabI	ACCWGGT	1 cut(s)	507
MaeI	CTAG	1 cut(s)	518
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	5 cut(s)	20, 71, 194, 263, 348
MboI	GATC	5 cut(s)	18, 69, 192, 261, 346
MboII	GAAGA	8 cut(s)	64, 268, 380, 410, 427, 430, 448, 506
MhlI	GDGCHC	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	202
MnlI	CCTC	8 cut(s)	118, 174, 191, 334, 372, 385, 445, 463
MroNI	GCCGGC	1 cut(s)	109
MseI	TTAA	1 cut(s)	535
MspA1I	CMGCKG	2 cut(s)	16, 216
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	509
MwoI	GCNNNNNNNGC	1 cut(s)	452
NaeI	GCCGGC	1 cut(s)	111
NdeII	GATC	5 cut(s)	18, 69, 192, 261, 346
NgoMIV	GCCGGC	1 cut(s)	109
NlaIV	GGNNCC	1 cut(s)	108
NmeAIII	GCCGAG	1 cut(s)	307
NmuCI	GTSAC	1 cut(s)	457
PceI	AGGCCT	1 cut(s)	76
PciSI	GCTCTTC	1 cut(s)	363
PdiI	GCCGGC	1 cut(s)	111
PflFI	GACNNNGTC	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	248
Ple19I	CGATCG	1 cut(s)	195
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	507
PspFI	CCCAGC	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	2 cut(s)	169, 464
PsrI	GAACNNNNNNTAC	2 cut(s)	287, 319
PstI	CTGCAG	1 cut(s)	302
PstNI	CAGNNNCTG	1 cut(s)	306
PsyI	GACNNNGTC	1 cut(s)	173
PvuI	CGATCG	1 cut(s)	195
PvuII	CAGCTG	1 cut(s)	16
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	535
SatI	GCNGC	1 cut(s)	247
Sau3AI	GATC	5 cut(s)	18, 69, 192, 261, 346
Sau96I	GGNCC	2 cut(s)	169, 464
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	7 cut(s)	18, 59, 305, 375, 427, 513, 523
SexAI	ACCWGGT	1 cut(s)	507
SfcI	CTRYAG	1 cut(s)	298
SinI	GGWCC	2 cut(s)	169, 464
SseBI	AGGCCT	1 cut(s)	76
SsiI	CCGC	3 cut(s)	216, 246, 249
SspI	AATATT	1 cut(s)	533
SspMI	CTAG	1 cut(s)	518
StuI	AGGCCT	1 cut(s)	76
StyD4I	CCNGG	1 cut(s)	507
TaaI	ACNGT	2 cut(s)	232, 308
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	3 cut(s)	21, 227, 234
TauI	GCSGC	1 cut(s)	249
Tru1I	TTAA	1 cut(s)	535
Tru9I	TTAA	1 cut(s)	535
TscAI	CASTG	1 cut(s)	466
TseFI	GTSAC	1 cut(s)	457
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	1 cut(s)	428
TspRI	CASTG	1 cut(s)	466
Tth111I	GACNNNGTC	1 cut(s)	173
VpaK11BI	GGWCC	2 cut(s)	169, 464
XspI	CTAG	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.