Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000553

Physical Location & Seq

Genomic Coordinates Reverse (-)

32657900 .. 32659573

Gene Structure 1674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g33310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGGCTTCCAATCCCTTGACCTCAGTGAAACCCCATGCAGTTTGCATACCATTCCCAGCTCAAGGCCACATAAACCCTATGCTAAAACTAGCAAAACTTCTCCACTACAAAGGGTTTCACATAACGTTTGTCAACACAGAGTTCATCCATCAACGCCTGCTTAAATCCCAAGGTCCCAACTCCCTTAACGGCTTCCCCACCTTTCGATTTGAAACCATTCCCGATGGCCTGCCTCCAACTGATGTTAGTGTTTCTGCTGCCCAACACATGCCGTCCCTCTGCCAATCCACTAGAAAAAACTGCTTAGCACCCTTCAAAGACCTTTTGTCGAAGCTCAATTCTTCACAAGAATTGGGAATTCCTAAAGTTACTTGCATAGTTGCCGATGGTATCATGCACTTCACTCTTGATGCAGCTCAAGAATTGGGAGTTCCTCAAGTTACTTTCTGGACAACGAGTGCTTGTGCCTTCATGGGCTACCTTCAGTATCGCCCTCTCATTGAAAAAGGTTTCACGCCTCTTAAAGATTGGATACCGGGCATGAGAGGTATACGATTGAAGGACATTCCAACTTTCATTAGAACCACAGAACCAGATGACCCCATTATGGATATTATCATGGTTGATACAGAACAAGCTAAAAGGGCTTCTGCTATCGTTTTGAACACGTTTAATGCCTTGGAGCATGAAGTTTTAGATGCATTATCGAATTTGCTACCACCAATTTATTGCATTGGTCCCTTAGATCTACAACTTGCCCAGATCACGACTGATAACGAATTGAAATTGATTGGATCAAACTTGTGGACAGAAGCAACGAATTGTCTTGAATGGCTCGACTCTAAAGAACCTGATTCTGTGCTTTATATCAACTTTGGAAGCAGCACAGTTATGACAGCTGAGCAGCTAATTGAGTTTGCTTGGGGACTTGCAAATAGTAATAAGACCATTTTTTGGGTTATTAGGCCTGACCTTGTTGGTGGGGTTTCATCTGTGGTTCCTACTGACTTTATAAAAGAGACCAAAGAAAGGAGTCTACTGGCAAGTTGGTGCCATCAAGAAAAAGTTTTGAACCACCCGGCTATCGGAGGGTTCTTGACGCACAACGGCTGGAACTCTACTATTGAAAGTGCGTGTGCCGGAGTGCCCATGATCTGTTGGCCTTTTAATGCTGATCAACAAACAAATTGTAGGTACAGTTGCAAAGAGTGGGGCATAGGCATGGAGATCGAAGGTGATGTTGAAAGAAATTATATAGAGAGACTTGTGAGAAAATTAATGGAGGGAGAGGAAGGCCATGAAATGAGAAAGAAAGCCTTGGAATGGAAGAAGTTGGCAAAGGAGGCGACTACTGGTCCTAACGGTTCATCTTTTTTGGATTTGGACCAAATGGTTTCCAAGGTGTGCATCTATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

473

Amino Acids

52.72

Weight (kDa)

5.69

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	14 - 248	3.8e-11	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	281 - 420	2.9e-19	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22340 AT1G22360 AT1G22360 AT1G22370 AT1G22370 AT1G22380 AT1G22400 AT1G78270
fragaria_vesca	FvH4_5g36970 FvH4_5g36972 FvH4_5g36980 FvH4_5g37000 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020
malus_domestica	MD08G1185000.v1.1 MD08G1185500.v1.1 MD08G1185600.v1.1 MD08G1185700.v1.1 MD15G1371800.v1.1
prunus_persica	Prupe.1G519500_v2.0.a1 Prupe.1G519600_v2.0.a1 Prupe.1G519700_v2.0.a1 Prupe.1G519800_v2.0.a1 Prupe.1G519900_v2.0.a1 Prupe.1G520000_v2.0.a1 Prupe.1G520100_v2.0.a1 Prupe.1G520200_v2.0.a1 Prupe.1G520300_v2.0.a1 Prupe.1G520400_v2.0.a1 Prupe.1G520400_v2.0.a1
pyrus_communis	pycom08g15890 pycom08g15930 pycom15g33310
rosa_chinensis	RchiOBHm_Chr7g0231031 RchiOBHm_Chr7g0231091 RchiOBHm_Chr7g0243731 RchiOBHm_Chr7g0243761 RchiOBHm_Chr7g0243781 RchiOBHm_Chr7g0243791 RchiOBHm_Chr7g0243821
rosa_laevigata	RLG00000000832 RLG00000000834 RLG00000000835 RLG00000000836 RLG00000000837 RLG00000000838 RLG00000001435 RLG00000001436 RLG00000001650
rosa_multiflora	Rmu_co8142950.1_g000001 Rmu_sc0000780.1_g000001 Rmu_sc0000780.1_g000003 Rmu_sc0000780.1_g000006 Rmu_sc0000780.1_g000007 Rmu_sc0012403.1_g000014
rosa_roxburghii	Rroxscaffold_3G00221740 Rroxscaffold_3G00221770 Rroxscaffold_3G00221810 Rroxscaffold_3G00221820
rosa_rugosa	Rorug07G0264200 Rorug07G0264400 Rorug07G0321000 Rorug07G0321300 Rorug07G0321600 Rorug07G0321700 Rorug07G0321800
rosa_samantha	Rh7CG437000 Rh7CG437300 Rh7CG493400 Rh7CG493800 Rh7CG494000 Rh7CG494500
rosa_wichuraiana	Rw7G034550 Rw7G039670 Rw7G039680 Rw7G039690 Rw7G039700 Rw7G039740 Rw7G039750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1013
AccB1I	GGYRCC	1 cut(s)	1050
AccB7I	CCANNNNNTGG	1 cut(s)	954
AccI	GTMKAC	2 cut(s)	550, 1036
AclI	AACGTT	1 cut(s)	125
AclWI	GGATC	1 cut(s)	802
AcsI	RAATTY	2 cut(s)	357, 709
AcuI	CTGAAG	1 cut(s)	467
AfaI	GTAC	1 cut(s)	1196
AfiI	CCNNNNNNNGG	6 cut(s)	62, 607, 954, 1029, 1085, 1323
AflIII	ACRYGT	1 cut(s)	666
AhdI	GACNNNNNGTC	2 cut(s)	325, 1353
AluBI	AGCT	6 cut(s)	59, 334, 416, 638, 899, 907
AluI	AGCT	6 cut(s)	59, 334, 416, 638, 899, 907
Alw26I	GTCTC	2 cut(s)	1013, 1255
AlwI	GGATC	1 cut(s)	802
AoxI	GGCC	5 cut(s)	64, 226, 965, 1160, 1294
ApeKI	GCWGC	4 cut(s)	257, 413, 882, 904
ApoI	RAATTY	2 cut(s)	357, 709
AseI	ATTAAT	1 cut(s)	1277
Asp700I	GAANNNNTTC	1 cut(s)	216
AspS9I	GGNCC	4 cut(s)	173, 737, 1355, 1384
AsuC2I	CCSGG	2 cut(s)	537, 1079
AsuHPI	GGTGA	1 cut(s)	1247
AvaII	GGWCC	4 cut(s)	173, 737, 1355, 1384
BaeGI	GKGCMC	1 cut(s)	1149
BanI	GGYRCC	1 cut(s)	1050
BbvI	GCAGC	4 cut(s)	244, 425, 894, 916
BccI	CCATC	4 cut(s)	156, 218, 380, 1062
BceAI	ACGGC	3 cut(s)	205, 256, 1123
BcgI	CGANNNNNNTGC	2 cut(s)	1210, 1244
BciVI	GTATCC	1 cut(s)	525
BclI	TGATCA	1 cut(s)	1174
BcnI	CCSGG	2 cut(s)	537, 1079
BcoDI	GTCTC	2 cut(s)	1013, 1255
BfaI	CTAG	2 cut(s)	89, 291
BfuI	GTATCC	1 cut(s)	525
BglII	AGATCT	1 cut(s)	745
BisI	GCNGC	4 cut(s)	258, 414, 883, 905
BlpI	GCTNAGC	2 cut(s)	304, 900
BlsI	GCNGC	4 cut(s)	259, 415, 884, 906
Bme1390I	CCNGG	2 cut(s)	537, 1079
Bme18I	GGWCC	4 cut(s)	173, 737, 1355, 1384
BmeRI	GACNNNNNGTC	2 cut(s)	325, 1353
BmgT120I	GGNCC	4 cut(s)	173, 737, 1355, 1384
BmiI	GGNNCC	4 cut(s)	175, 739, 999, 1052
BmrFI	CCNGG	2 cut(s)	537, 1079
BmsI	GCATC	2 cut(s)	400, 688
Bpu1102I	GCTNAGC	2 cut(s)	304, 900
BpuEI	CTTGAG	3 cut(s)	45, 402, 420
BpuMI	CCSGG	2 cut(s)	537, 1079
BsaI	GGTCTC	1 cut(s)	1013
BsaJI	CCNNGG	4 cut(s)	169, 678, 1317, 1398
Bsc4I	CCNNNNNNNGG	6 cut(s)	62, 607, 954, 1029, 1085, 1323
Bse1I	ACTGG	2 cut(s)	1044, 1357
BseDI	CCNNGG	4 cut(s)	169, 678, 1317, 1398
BseGI	GGATG	1 cut(s)	144
BseLI	CCNNNNNNNGG	6 cut(s)	62, 607, 954, 1029, 1085, 1323
BseMII	CTCAG	2 cut(s)	36, 891
BseNI	ACTGG	2 cut(s)	1044, 1357
BseSI	GKGCMC	1 cut(s)	1149
BseXI	GCAGC	4 cut(s)	244, 425, 894, 916
BseYI	CCCAGC	1 cut(s)	55
BshFI	GGCC	5 cut(s)	66, 228, 967, 1162, 1296
BshNI	GGYRCC	1 cut(s)	1050
BsiSI	CCGG	3 cut(s)	536, 1079, 1140
BslFI	GGGAC	4 cut(s)	159, 259, 723, 939
BslI	CCNNNNNNNGG	6 cut(s)	62, 607, 954, 1029, 1085, 1323
BsmAI	GTCTC	2 cut(s)	1013, 1255
BsmFI	GGGAC	4 cut(s)	159, 259, 723, 939
BsnI	GGCC	5 cut(s)	66, 228, 967, 1162, 1296
Bso31I	GGTCTC	1 cut(s)	1013
Bsp1286I	GDGCHC	1 cut(s)	1149
Bsp143I	GATC	6 cut(s)	745, 762, 794, 1152, 1174, 1227
Bsp1720I	GCTNAGC	2 cut(s)	304, 900
BspANI	GGCC	5 cut(s)	66, 228, 967, 1162, 1296
BspCNI	CTCAG	2 cut(s)	35, 892
BspLI	GGNNCC	4 cut(s)	175, 739, 999, 1052
BspPI	GGATC	1 cut(s)	802
BspT107I	GGYRCC	1 cut(s)	1050
BspTNI	GGTCTC	1 cut(s)	1013
BsrI	ACTGG	2 cut(s)	1044, 1357
BssECI	CCNNGG	4 cut(s)	169, 678, 1317, 1398
BssMI	GATC	6 cut(s)	745, 762, 794, 1152, 1174, 1227
BssNAI	GTATAC	1 cut(s)	551
BssT1I	CCWWGG	4 cut(s)	169, 678, 1317, 1398
Bst1107I	GTATAC	1 cut(s)	551
Bst4CI	ACNGT	3 cut(s)	889, 1199, 1364
BstC8I	GCNNGC	2 cut(s)	158, 230
BstDEI	CTNAG	4 cut(s)	22, 304, 742, 900
BstF5I	GGATG	1 cut(s)	144
BstKTI	GATC	6 cut(s)	748, 765, 797, 1155, 1177, 1230
BstMAI	GTCTC	2 cut(s)	1013, 1255
BstMBI	GATC	6 cut(s)	745, 762, 794, 1152, 1174, 1227
BstMWI	GCNNNNNNNGC	2 cut(s)	644, 1343
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	2 cut(s)	535, 1077
BstSLI	GKGCMC	1 cut(s)	1149
BstV1I	GCAGC	4 cut(s)	244, 425, 894, 916
BstX2I	RGATCY	1 cut(s)	745
BstYI	RGATCY	1 cut(s)	745
BstZ17I	GTATAC	1 cut(s)	551
BsuI	GTATCC	1 cut(s)	525
BsuRI	GGCC	5 cut(s)	66, 228, 967, 1162, 1296
BtsCI	GGATG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	158, 230
Cfr13I	GGNCC	4 cut(s)	173, 737, 1355, 1384
CseI	GACGC	1 cut(s)	1108
Csp6I	GTAC	1 cut(s)	1195
CviQI	GTAC	1 cut(s)	1195
DdeI	CTNAG	4 cut(s)	22, 304, 742, 900
DpnI	GATC	6 cut(s)	747, 764, 796, 1154, 1176, 1229
DpnII	GATC	6 cut(s)	745, 762, 794, 1152, 1174, 1227
DriI	GACNNNNNGTC	2 cut(s)	325, 1353
Eam1105I	GACNNNNNGTC	2 cut(s)	325, 1353
Eco130I	CCWWGG	4 cut(s)	169, 678, 1317, 1398
Eco147I	AGGCCT	1 cut(s)	967
Eco31I	GGTCTC	1 cut(s)	1013
Eco47I	GGWCC	4 cut(s)	173, 737, 1355, 1384
Eco57I	CTGAAG	1 cut(s)	467
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	357
EcoT14I	CCWWGG	4 cut(s)	169, 678, 1317, 1398
EcoT22I	ATGCAT	1 cut(s)	703
ErhI	CCWWGG	4 cut(s)	169, 678, 1317, 1398
FalI	AAGNNNNNCTT	2 cut(s)	1301, 1333
FaqI	GGGAC	4 cut(s)	159, 259, 723, 939
FbaI	TGATCA	1 cut(s)	1174
FblI	GTMKAC	2 cut(s)	550, 1036
Fnu4HI	GCNGC	4 cut(s)	258, 414, 883, 905
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	4 cut(s)	258, 414, 883, 905
FspBI	CTAG	2 cut(s)	89, 291
GluI	GCNGC	4 cut(s)	258, 414, 883, 905
GsaI	CCCAGC	1 cut(s)	59
HaeIII	GGCC	5 cut(s)	66, 228, 967, 1162, 1296
HapII	CCGG	3 cut(s)	536, 1079, 1140
HgaI	GACGC	1 cut(s)	1108
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	3 cut(s)	839, 854, 1033
HpaII	CCGG	3 cut(s)	536, 1079, 1140
HphI	GGTGA	1 cut(s)	1247
Hpy166II	GTNNAC	4 cut(s)	133, 551, 807, 1037
Hpy188I	TCNGA	2 cut(s)	1088, 1418
Hpy188III	TCNNGA	8 cut(s)	221, 407, 419, 448, 766, 827, 1058, 1096
Hpy8I	GTNNAC	4 cut(s)	133, 551, 807, 1037
HpyAV	CCTTC	6 cut(s)	322, 478, 491, 553, 1226, 1286
HpyCH4III	ACNGT	3 cut(s)	889, 1199, 1364
HpyCH4IV	ACGT	2 cut(s)	125, 668
HpyF10VI	GCNNNNNNNGC	2 cut(s)	644, 1343
HpyF3I	CTNAG	4 cut(s)	22, 304, 742, 900
HpySE526I	ACGT	2 cut(s)	125, 668
Ksp22I	TGATCA	1 cut(s)	1174
Kzo9I	GATC	6 cut(s)	745, 762, 794, 1152, 1174, 1227
LmnI	GCTCC	1 cut(s)	682
Lsp1109I	GCAGC	4 cut(s)	244, 425, 894, 916
LweI	GCATC	2 cut(s)	400, 688
MaeI	CTAG	2 cut(s)	89, 291
MaeII	ACGT	2 cut(s)	125, 668
MaeIII	GTNAC	2 cut(s)	367, 439
MalI	GATC	6 cut(s)	747, 764, 796, 1154, 1176, 1229
MboI	GATC	6 cut(s)	745, 762, 794, 1152, 1174, 1227
MboII	GAAGA	2 cut(s)	333, 1339
MflI	RGATCY	1 cut(s)	745
MhlI	GDGCHC	1 cut(s)	1149
MlyI	GAGTC	2 cut(s)	833, 1042
MmeI	TCCRAC	2 cut(s)	260, 593
Mph1103I	ATGCAT	1 cut(s)	703
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	6 cut(s)	162, 186, 522, 672, 1167, 1277
MslI	CAYNNNNRTG	2 cut(s)	890, 1220
MspA1I	CMGCKG	1 cut(s)	899
MspI	CCGG	3 cut(s)	536, 1079, 1140
MspR9I	CCNGG	2 cut(s)	537, 1079
MwoI	GCNNNNNNNGC	2 cut(s)	644, 1343
NciI	CCSGG	2 cut(s)	537, 1079
NdeII	GATC	6 cut(s)	745, 762, 794, 1152, 1174, 1227
NlaIV	GGNNCC	4 cut(s)	175, 739, 999, 1052
NsiI	ATGCAT	1 cut(s)	703
NspI	RCATGY	1 cut(s)	271
PceI	AGGCCT	1 cut(s)	967
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	854
PflMI	CCANNNNNTGG	1 cut(s)	954
PkrI	GCNGC	4 cut(s)	259, 415, 884, 906
PleI	GAGTC	2 cut(s)	833, 1041
PpsI	GAGTC	2 cut(s)	833, 1041
PpuMI	RGGWCCY	1 cut(s)	173
PshBI	ATTAAT	1 cut(s)	1277
PsiI	TTATAA	1 cut(s)	1013
Psp1406I	AACGTT	1 cut(s)	125
Psp5II	RGGWCCY	1 cut(s)	173
PspFI	CCCAGC	1 cut(s)	55
PspN4I	GGNNCC	4 cut(s)	175, 739, 999, 1052
PspPI	GGNCC	4 cut(s)	173, 737, 1355, 1384
PspPPI	RGGWCCY	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	745
PvuII	CAGCTG	1 cut(s)	899
RsaI	GTAC	1 cut(s)	1196
RsaNI	GTAC	1 cut(s)	1195
RseI	CAYNNNNRTG	2 cut(s)	890, 1220
SaqAI	TTAA	6 cut(s)	162, 186, 522, 672, 1167, 1277
SatI	GCNGC	4 cut(s)	258, 414, 883, 905
Sau3AI	GATC	6 cut(s)	745, 762, 794, 1152, 1174, 1227
Sau96I	GGNCC	4 cut(s)	173, 737, 1355, 1384
SchI	GAGTC	2 cut(s)	833, 1042
ScrFI	CCNGG	2 cut(s)	537, 1079
SduI	GDGCHC	1 cut(s)	1149
SfaNI	GCATC	2 cut(s)	400, 688
SinI	GGWCC	4 cut(s)	173, 737, 1355, 1384
SmiMI	CAYNNNNRTG	2 cut(s)	890, 1220
SmlI	CTYRAG	3 cut(s)	60, 417, 435
SmoI	CTYRAG	3 cut(s)	60, 417, 435
SseBI	AGGCCT	1 cut(s)	967
SspMI	CTAG	2 cut(s)	89, 291
StuI	AGGCCT	1 cut(s)	967
StyD4I	CCNGG	2 cut(s)	535, 1077
StyI	CCWWGG	4 cut(s)	169, 678, 1317, 1398
TaaI	ACNGT	3 cut(s)	889, 1199, 1364
TaiI	ACGT	2 cut(s)	128, 671
TaqI	TCGA	5 cut(s)	205, 329, 707, 837, 1230
TfiI	GAWTC	1 cut(s)	854
Tru1I	TTAA	6 cut(s)	162, 186, 522, 672, 1167, 1277
Tru9I	TTAA	6 cut(s)	162, 186, 522, 672, 1167, 1277
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	4 cut(s)	257, 413, 882, 904
TspDTI	ATGAA	7 cut(s)	133, 460, 565, 702, 978, 1314, 1356
TspRI	CASTG	1 cut(s)	30
Van91I	CCANNNNNTGG	1 cut(s)	954
VpaK11BI	GGWCC	4 cut(s)	173, 737, 1355, 1384
VspI	ATTAAT	1 cut(s)	1277
XapI	RAATTY	2 cut(s)	357, 709
XceI	RCATGY	1 cut(s)	271
XmiI	GTMKAC	2 cut(s)	550, 1036
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	2 cut(s)	89, 291
Zsp2I	ATGCAT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.