Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000553

Physical Location & Seq

Genomic Coordinates Forward (+)

66359146 .. 66361269

Gene Structure 2124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG493800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGCTCAAACTAGCCAAACTGCTTCACTACAAAGGCTTTCATATAACCTTTGTCAACACAGAGTACAACCATAGACGCTGGCTTAAATCCCGAGGCCCTAACTCCGCCGATGGCCTCCCTTCCTTTCGATTTGAAACAATTCCAGATGGCCTCCCTCCAACTGATGCAAATGCTACACAACACATACCATCCTTATGTGAATCCACAAAGAAAAACTGCTTAGCTCCCTTCAGAGAACTTCTTTCAAAGCTGAATTCTTCTTCAAACAATAATATCCCTCAGGTAACTTGCATAGTGGCTGATGGTGTCATGAGCTACAGTCTAGACGCTGGTGAGGAACTGGGGATTCCGGTAGTTCTTTTCTGGACACCAAGTGCTTCTGGCTTCATGGGCTACCTTCAGTATCACCGACTCATCCAAGAGGGTCTCACTCCTTTCAAAGATACCAGCTGTTTGACAAACGGGTATTTGGATACTGTAATTGATTGGATACCAGGCATGAGAGGTATCCGTTTAAAGGACATCCCGAGTTTCATTAGGACAACAGACCCAGATGACATCATGCTGAATTTTCTTGTATATGAGACTGAACGATCTCAAAGAGCTTCTGCTATTATCTTGAACACGTTCTACGACTTGGAGCATGAAGTTCTAGATGCACTGTCAAGTTTGCTACCACCCATTTACACCATTGGACCTGTACATCTACAACTTCATCAGATCCCATCAGATAGCGAGTTGAAGTTGATAGAATCAAACCTATGGATAGAGGAACCAGAGTGTCTTGACTGGCTTCACTTAAAAGAACAAAATTCTGTTGTATATGTCAATTTCGGAAGCATTACAGTCATGACAGCCGAGCAGCTAATTGAGTTTGCTTGGGGACTTGCAAACAGCAACAAGCCATTTCTCTGGGTCATAAGGCCTGACCTTGTTGCTGGGGAATCAGCTGTGCTTCCACCAGAGTTTCTAGAAGAAATCAAAGAAAGGGGCCTATTATCAAGCATGGAGATAGAGGGTGAAGTCAGGAGAAATTACATAGAAAGGCTTGTGAGAAAGTTGATGGAGGGAGAGGAGGGCAATGAGATGAGGAAGAAAGCCAAGGAATTGAAGAGGTTGGCAGAGGAGGCCTCTAGTGGTCCTAATGGGTTATCATTTTTGAATTTGGAGAAGCTGGTTAACCAGGTTTTGGGATCACAGAAAGATGTCTTTGGAGGGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

407

Amino Acids

45.91

Weight (kDa)

5.16

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22340 AT1G22360 AT1G22360 AT1G22370 AT1G22370 AT1G22380 AT1G22400 AT1G78270
fragaria_vesca	FvH4_5g36970 FvH4_5g36972 FvH4_5g36980 FvH4_5g37000 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020
malus_domestica	MD08G1185000.v1.1 MD08G1185500.v1.1 MD08G1185600.v1.1 MD08G1185700.v1.1 MD15G1371800.v1.1
prunus_persica	Prupe.1G519500_v2.0.a1 Prupe.1G519600_v2.0.a1 Prupe.1G519700_v2.0.a1 Prupe.1G519800_v2.0.a1 Prupe.1G519900_v2.0.a1 Prupe.1G520000_v2.0.a1 Prupe.1G520100_v2.0.a1 Prupe.1G520200_v2.0.a1 Prupe.1G520300_v2.0.a1 Prupe.1G520400_v2.0.a1 Prupe.1G520400_v2.0.a1
pyrus_communis	pycom08g15890 pycom08g15930 pycom15g33310
rosa_chinensis	RchiOBHm_Chr7g0231031 RchiOBHm_Chr7g0231091 RchiOBHm_Chr7g0243731 RchiOBHm_Chr7g0243761 RchiOBHm_Chr7g0243781 RchiOBHm_Chr7g0243791 RchiOBHm_Chr7g0243821
rosa_laevigata	RLG00000000832 RLG00000000834 RLG00000000835 RLG00000000836 RLG00000000837 RLG00000000838 RLG00000001435 RLG00000001436 RLG00000001650
rosa_multiflora	Rmu_co8142950.1_g000001 Rmu_sc0000780.1_g000001 Rmu_sc0000780.1_g000003 Rmu_sc0000780.1_g000006 Rmu_sc0000780.1_g000007 Rmu_sc0012403.1_g000014
rosa_roxburghii	Rroxscaffold_3G00221740 Rroxscaffold_3G00221770 Rroxscaffold_3G00221810 Rroxscaffold_3G00221820
rosa_rugosa	Rorug07G0264200 Rorug07G0264400 Rorug07G0321000 Rorug07G0321300 Rorug07G0321600 Rorug07G0321700 Rorug07G0321800
rosa_samantha	Rh7CG437000 Rh7CG437300 Rh7CG493400 Rh7CG493800 Rh7CG494000 Rh7CG494500
rosa_wichuraiana	Rw7G034550 Rw7G039670 Rw7G039680 Rw7G039690 Rw7G039700 Rw7G039740 Rw7G039750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1189
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	2 cut(s)	715, 1201
AcsI	RAATTY	4 cut(s)	253, 568, 811, 1162
AcuI	CTGAAG	2 cut(s)	214, 383
AdeI	CACNNNGTG	1 cut(s)	374
AfaI	GTAC	2 cut(s)	65, 702
AfiI	CCNNNNNNNGG	2 cut(s)	517, 1189
AflIII	ACRYGT	1 cut(s)	624
AgsI	TTSAA	8 cut(s)	134, 246, 264, 439, 622, 742, 1111, 1162
AjnI	CCWGG	2 cut(s)	493, 1182
AluBI	AGCT	8 cut(s)	224, 250, 315, 450, 605, 865, 950, 1174
AluI	AGCT	8 cut(s)	224, 250, 315, 450, 605, 865, 950, 1174
Alw26I	GTCTC	2 cut(s)	431, 578
AlwI	GGATC	2 cut(s)	715, 1201
Ama87I	CYCGRG	2 cut(s)	90, 526
AoxI	GGCC	6 cut(s)	94, 112, 148, 923, 991, 1128
ApeKI	GCWGC	1 cut(s)	862
ApoI	RAATTY	4 cut(s)	253, 568, 811, 1162
Asp700I	GAANNNNTTC	2 cut(s)	138, 626
AspS9I	GGNCC	4 cut(s)	95, 695, 991, 1139
AsuHPI	GGTGA	3 cut(s)	344, 398, 1031
AvaI	CYCGRG	2 cut(s)	90, 526
AvaII	GGWCC	2 cut(s)	695, 1139
AxyI	CCTNAGG	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	874
BccI	CCATC	6 cut(s)	104, 140, 196, 296, 733, 1057
BciT130I	CCWGG	2 cut(s)	495, 1184
BciVI	GTATCC	3 cut(s)	466, 483, 518
BcoDI	GTCTC	2 cut(s)	431, 578
BfaI	CTAG	5 cut(s)	11, 323, 653, 971, 1134
BfmI	CTRYAG	1 cut(s)	316
BfuI	GTATCC	3 cut(s)	466, 483, 518
BisI	GCNGC	1 cut(s)	863
BlpI	GCTNAGC	1 cut(s)	220
BlsI	GCNGC	1 cut(s)	864
Bme1390I	CCNGG	2 cut(s)	495, 1184
Bme18I	GGWCC	2 cut(s)	695, 1139
BmeT110I	CYCGRG	2 cut(s)	90, 526
BmgT120I	GGNCC	4 cut(s)	95, 695, 991, 1139
BmiI	GGNNCC	2 cut(s)	774, 992
BmrFI	CCNGG	2 cut(s)	495, 1184
BmrI	ACTGGG	1 cut(s)	350
BmsI	GCATC	2 cut(s)	154, 646
BmuI	ACTGGG	1 cut(s)	350
BplI	GAGNNNNNCTC	2 cut(s)	1115, 1147
Bpu1102I	GCTNAGC	1 cut(s)	220
BsaI	GGTCTC	1 cut(s)	431
BsaJI	CCNNGG	2 cut(s)	91, 1101
BsaWI	WCCGGW	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	2 cut(s)	517, 1189
Bse1I	ACTGG	2 cut(s)	345, 794
Bse21I	CCTNAGG	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	1087
BseBI	CCWGG	2 cut(s)	495, 1184
BseDI	CCNNGG	2 cut(s)	91, 1101
BseGI	GGATG	3 cut(s)	188, 414, 522
BseLI	CCNNNNNNNGG	2 cut(s)	517, 1189
BseMI	GCAATG	1 cut(s)	1087
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	2 cut(s)	345, 794
BseRI	GAGGAG	2 cut(s)	1088, 1139
BseXI	GCAGC	1 cut(s)	874
BseYI	CCCAGC	1 cut(s)	938
BshFI	GGCC	6 cut(s)	96, 114, 150, 925, 993, 1130
BsiHKCI	CYCGRG	2 cut(s)	90, 526
BsiSI	CCGG	1 cut(s)	350
BslFI	GGGAC	1 cut(s)	897
BslI	CCNNNNNNNGG	2 cut(s)	517, 1189
BsmAI	GTCTC	2 cut(s)	431, 578
BsmFI	GGGAC	1 cut(s)	897
BsnI	GGCC	6 cut(s)	96, 114, 150, 925, 993, 1130
Bso31I	GGTCTC	1 cut(s)	431
BsoBI	CYCGRG	2 cut(s)	90, 526
Bsp1407I	TGTACA	1 cut(s)	700
Bsp143I	GATC	3 cut(s)	593, 720, 1193
Bsp1720I	GCTNAGC	1 cut(s)	220
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	6 cut(s)	96, 114, 150, 925, 993, 1130
BspCNI	CTCAG	1 cut(s)	292
BspHI	TCATGA	2 cut(s)	309, 849
BspLI	GGNNCC	2 cut(s)	774, 992
BspPI	GGATC	2 cut(s)	715, 1201
BspTNI	GGTCTC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	1087
BsrGI	TGTACA	1 cut(s)	700
BsrI	ACTGG	2 cut(s)	345, 794
BssECI	CCNNGG	2 cut(s)	91, 1101
BssMI	GATC	3 cut(s)	593, 720, 1193
BssT1I	CCWWGG	1 cut(s)	1101
Bst2UI	CCWGG	2 cut(s)	495, 1184
Bst4CI	ACNGT	4 cut(s)	320, 478, 663, 847
Bst6I	CTCTTC	1 cut(s)	1106
BstAUI	TGTACA	1 cut(s)	700
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	220, 279
BstF5I	GGATG	3 cut(s)	188, 414, 522
BstKTI	GATC	3 cut(s)	596, 723, 1196
BstMAI	GTCTC	2 cut(s)	431, 578
BstMBI	GATC	3 cut(s)	593, 720, 1193
BstMWI	GCNNNNNNNGC	2 cut(s)	390, 1127
BstNI	CCWGG	2 cut(s)	495, 1184
BstSCI	CCNGG	2 cut(s)	493, 1182
BstSFI	CTRYAG	1 cut(s)	316
BstV1I	GCAGC	1 cut(s)	874
BstX2I	RGATCY	1 cut(s)	720
BstXI	CCANNNNNNTGG	1 cut(s)	912
BstYI	RGATCY	1 cut(s)	720
Bsu36I	CCTNAGG	1 cut(s)	279
BsuI	GTATCC	3 cut(s)	466, 483, 518
BsuRI	GGCC	6 cut(s)	96, 114, 150, 925, 993, 1130
BtsCI	GGATG	3 cut(s)	188, 414, 522
BtsIMutI	CAGTG	1 cut(s)	659
Cac8I	GCNNGC	1 cut(s)	80
CciI	TCATGA	2 cut(s)	309, 849
Cfr13I	GGNCC	4 cut(s)	95, 695, 991, 1139
CseI	GACGC	2 cut(s)	84, 335
CsiI	ACCWGGT	1 cut(s)	1182
Csp6I	GTAC	2 cut(s)	64, 701
CviAII	CATG	7 cut(s)	310, 388, 499, 562, 644, 850, 1006
CviQI	GTAC	2 cut(s)	64, 701
DdeI	CTNAG	2 cut(s)	220, 279
DpnI	GATC	3 cut(s)	595, 722, 1195
DpnII	GATC	3 cut(s)	593, 720, 1193
DraI	TTTAAA	1 cut(s)	516
DraIII	CACNNNGTG	1 cut(s)	374
Eam1104I	CTCTTC	1 cut(s)	1106
EarI	CTCTTC	1 cut(s)	1106
EciI	GGCGGA	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	1101
Eco147I	AGGCCT	2 cut(s)	925, 1130
Eco31I	GGTCTC	1 cut(s)	431
Eco47I	GGWCC	2 cut(s)	695, 1139
Eco57I	CTGAAG	2 cut(s)	214, 383
Eco81I	CCTNAGG	1 cut(s)	279
Eco88I	CYCGRG	2 cut(s)	90, 526
EcoO109I	RGGNCCY	2 cut(s)	95, 991
EcoRI	GAATTC	1 cut(s)	253
EcoRII	CCWGG	2 cut(s)	493, 1182
EcoT14I	CCWWGG	1 cut(s)	1101
ErhI	CCWWGG	1 cut(s)	1101
FaeI	CATG	7 cut(s)	313, 391, 502, 565, 647, 853, 1009
FaqI	GGGAC	1 cut(s)	897
FatI	CATG	7 cut(s)	309, 387, 498, 561, 643, 849, 1005
Fnu4HI	GCNGC	1 cut(s)	863
FokI	GGATG	3 cut(s)	175, 401, 509
Fsp4HI	GCNGC	1 cut(s)	863
FspBI	CTAG	5 cut(s)	11, 323, 653, 971, 1134
GluI	GCNGC	1 cut(s)	863
GsaI	CCCAGC	1 cut(s)	942
HaeIII	GGCC	6 cut(s)	96, 114, 150, 925, 993, 1130
HapII	CCGG	1 cut(s)	350
HgaI	GACGC	2 cut(s)	84, 335
Hin1II	CATG	7 cut(s)	313, 391, 502, 565, 647, 853, 1009
HincII	GTYRAC	2 cut(s)	55, 1180
HindII	GTYRAC	2 cut(s)	55, 1180
HinfI	GANTC	5 cut(s)	200, 346, 411, 752, 944
HpaI	GTTAAC	1 cut(s)	1180
HpaII	CCGG	1 cut(s)	350
HphI	GGTGA	3 cut(s)	344, 398, 1031
Hpy166II	GTNNAC	2 cut(s)	55, 1180
Hpy188I	TCNGA	4 cut(s)	233, 720, 730, 836
Hpy8I	GTNNAC	2 cut(s)	55, 1180
HpyAV	CCTTC	3 cut(s)	129, 238, 407
HpyCH4III	ACNGT	4 cut(s)	320, 478, 663, 847
HpyCH4IV	ACGT	1 cut(s)	626
HpyCH4V	TGCA	4 cut(s)	167, 291, 659, 890
HpyF10VI	GCNNNNNNNGC	2 cut(s)	390, 1127
HpyF3I	CTNAG	2 cut(s)	220, 279
HpySE526I	ACGT	1 cut(s)	626
Hsp92II	CATG	7 cut(s)	313, 391, 502, 565, 647, 853, 1009
KspAI	GTTAAC	1 cut(s)	1180
Kzo9I	GATC	3 cut(s)	593, 720, 1193
LmnI	GCTCC	2 cut(s)	229, 640
Lsp1109I	GCAGC	1 cut(s)	874
LweI	GCATC	2 cut(s)	154, 646
MabI	ACCWGGT	1 cut(s)	1182
MaeI	CTAG	5 cut(s)	11, 323, 653, 971, 1134
MaeII	ACGT	1 cut(s)	626
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	3 cut(s)	595, 722, 1195
MboI	GATC	3 cut(s)	593, 720, 1193
MboII	GAAGA	5 cut(s)	249, 252, 986, 1105, 1123
MflI	RGATCY	1 cut(s)	720
MlyI	GAGTC	1 cut(s)	405
MmeI	TCCRAC	1 cut(s)	182
MroXI	GAANNNNTTC	2 cut(s)	138, 626
MseI	TTAA	4 cut(s)	84, 515, 800, 1179
MslI	CAYNNNNRTG	1 cut(s)	193
MspA1I	CMGCKG	2 cut(s)	450, 950
MspI	CCGG	1 cut(s)	350
MspR9I	CCNGG	2 cut(s)	495, 1184
MvaI	CCWGG	2 cut(s)	495, 1184
MwoI	GCNNNNNNNGC	2 cut(s)	390, 1127
NdeII	GATC	3 cut(s)	593, 720, 1193
NlaIII	CATG	7 cut(s)	313, 391, 502, 565, 647, 853, 1009
NlaIV	GGNNCC	2 cut(s)	774, 992
NmeAIII	GCCGAG	1 cut(s)	883
PagI	TCATGA	2 cut(s)	309, 849
PceI	AGGCCT	2 cut(s)	925, 1130
PdmI	GAANNNNTTC	2 cut(s)	138, 626
PfeI	GAWTC	4 cut(s)	200, 346, 752, 944
PflMI	CCANNNNNTGG	1 cut(s)	1189
PkrI	GCNGC	1 cut(s)	864
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
Psp6I	CCWGG	2 cut(s)	493, 1182
PspFI	CCCAGC	1 cut(s)	938
PspGI	CCWGG	2 cut(s)	493, 1182
PspN4I	GGNNCC	2 cut(s)	774, 992
PspPI	GGNCC	4 cut(s)	95, 695, 991, 1139
PsrI	GAACNNNNNNTAC	2 cut(s)	614, 646
PsuI	RGATCY	1 cut(s)	720
PvuII	CAGCTG	2 cut(s)	450, 950
RsaI	GTAC	2 cut(s)	65, 702
RsaNI	GTAC	2 cut(s)	64, 701
RseI	CAYNNNNRTG	1 cut(s)	193
SaqAI	TTAA	4 cut(s)	84, 515, 800, 1179
SatI	GCNGC	1 cut(s)	863
Sau3AI	GATC	3 cut(s)	593, 720, 1193
Sau96I	GGNCC	4 cut(s)	95, 695, 991, 1139
SchI	GAGTC	1 cut(s)	405
ScrFI	CCNGG	2 cut(s)	495, 1184
SexAI	ACCWGGT	1 cut(s)	1182
SfaNI	GCATC	2 cut(s)	154, 646
SfcI	CTRYAG	1 cut(s)	316
SinI	GGWCC	2 cut(s)	695, 1139
SmiMI	CAYNNNNRTG	1 cut(s)	193
SseBI	AGGCCT	2 cut(s)	925, 1130
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	5 cut(s)	11, 323, 653, 971, 1134
StuI	AGGCCT	2 cut(s)	925, 1130
StyD4I	CCNGG	2 cut(s)	493, 1182
StyI	CCWWGG	1 cut(s)	1101
TaaI	ACNGT	4 cut(s)	320, 478, 663, 847
TaiI	ACGT	1 cut(s)	629
TaqI	TCGA	1 cut(s)	127
TatI	WGTACW	2 cut(s)	63, 700
TfiI	GAWTC	4 cut(s)	200, 346, 752, 944
Tru1I	TTAA	4 cut(s)	84, 515, 800, 1179
Tru9I	TTAA	4 cut(s)	84, 515, 800, 1179
TscAI	CASTG	1 cut(s)	666
TseI	GCWGC	1 cut(s)	862
TspDTI	ATGAA	5 cut(s)	29, 376, 523, 660, 704
TspGWI	ACGGA	1 cut(s)	500
TspRI	CASTG	1 cut(s)	666
Van91I	CCANNNNNTGG	1 cut(s)	1189
VpaK11BI	GGWCC	2 cut(s)	695, 1139
XapI	RAATTY	4 cut(s)	253, 568, 811, 1162
XbaI	TCTAGA	3 cut(s)	322, 652, 970
XmnI	GAANNNNTTC	2 cut(s)	138, 626
XspI	CTAG	5 cut(s)	11, 323, 653, 971, 1134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.