RLG00000001436

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000553
Physical Location & Seq
Forward (+)
15617105 .. 15618689
1585 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001436

Sequence Viewer

Length: 915 bp
ATGAAAGATATCCGTTTGAAGGATATCCCAACCTTCATCAGAACCACAGACCCAAATGACAACATGATCGATTTCTTTCTTCACGAAACCGAAATTGCAGCTAAGAAAGCCTCCGCCATCATCTTGAACACATTTGACGACATAGAACACGACGTCCTCGAAGCACTCCCAACCCTCCTACCGCCAGTCTACTCCATCGGACCCCTAAACCTACAAGTCAATCAAATCCCACCCGACAATGAGTTGCAGACCTTTGGATCAAACAGGGGCAGAGCCGTCATTCGGCCTGACACGAAGGAAGAGACAAAGGTTCTGGAATGGTTGGACTCTAAAGAGCCCAACTCTGTCGTCTACGTCAACTTCAGAAGCATCACAATGATGACCCAAACTCAGCTGATCGAGTTTGCTTGGGGGCTCGCAAACAGCAAGAAGACGTTTCTTTGGGTGATCAGGCCTGACCTAGTTAGGGAAGCATCGGTTGTGGTGCCGGCAGAGTTTGTAGAGGAGACAAGAGAAAGAAGTATGTTGGTCAGTTGGTGTCCTCAGGACCAAGTCCTGAGTCACCCAGCGATCATAGGGTTCTTGACTCACAGTGGGTGGAACTCGACGGTCGAGAGTGTCTACAATAGAGTGCCAATGATCTGCTGGCCTTTCTTCGTCGAGCAACAGACGAACTACAGGTACTGTTGCAAAGAGTGGGGAATAGGGATGGAGATTGAGGGCGATCCTAAGAGAGATTATATAGAAGGGCTTGTGAGGAAGTTGATGGAGGGAGAAGAAGGGAAAGAGATGAAGAAGAAAGCTCTAGAATGGAAGAGGTTGGCAATGGAGGCCGCCACTGGTTCTGAGGGTTCATCTTTTATGAACCTGGACAAGATGGTCAATCAAGTTCTTCTAGCTCCCATAAATAATTAG

Protein Analysis

305

Amino Acids

34.85

Weight (kDa)

5.03

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 105 - 236 2.6e-22 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22340 AT1G22360 AT1G22360 AT1G22370 AT1G22370 AT1G22380 AT1G22400 AT1G78270
fragaria_vesca FvH4_5g36970 FvH4_5g36972 FvH4_5g36980 FvH4_5g37000 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020
malus_domestica MD08G1185000.v1.1 MD08G1185500.v1.1 MD08G1185600.v1.1 MD08G1185700.v1.1 MD15G1371800.v1.1
prunus_persica Prupe.1G519500_v2.0.a1 Prupe.1G519600_v2.0.a1 Prupe.1G519700_v2.0.a1 Prupe.1G519800_v2.0.a1 Prupe.1G519900_v2.0.a1 Prupe.1G520000_v2.0.a1 Prupe.1G520100_v2.0.a1 Prupe.1G520200_v2.0.a1 Prupe.1G520300_v2.0.a1 Prupe.1G520400_v2.0.a1 Prupe.1G520400_v2.0.a1
pyrus_communis pycom08g15890 pycom08g15930 pycom15g33310
rosa_chinensis RchiOBHm_Chr7g0231031 RchiOBHm_Chr7g0231091 RchiOBHm_Chr7g0243731 RchiOBHm_Chr7g0243761 RchiOBHm_Chr7g0243781 RchiOBHm_Chr7g0243791 RchiOBHm_Chr7g0243821
rosa_laevigata RLG00000000832 RLG00000000834 RLG00000000835 RLG00000000836 RLG00000000837 RLG00000000838 RLG00000001435 RLG00000001436 RLG00000001650
rosa_multiflora Rmu_co8142950.1_g000001 Rmu_sc0000780.1_g000001 Rmu_sc0000780.1_g000003 Rmu_sc0000780.1_g000006 Rmu_sc0000780.1_g000007 Rmu_sc0012403.1_g000014
rosa_roxburghii Rroxscaffold_3G00221740 Rroxscaffold_3G00221770 Rroxscaffold_3G00221810 Rroxscaffold_3G00221820
rosa_rugosa Rorug07G0264200 Rorug07G0264400 Rorug07G0321000 Rorug07G0321300 Rorug07G0321600 Rorug07G0321700 Rorug07G0321800
rosa_samantha Rh7CG437000 Rh7CG437300 Rh7CG493400 Rh7CG493800 Rh7CG494000 Rh7CG494500
rosa_wichuraiana Rw7G034550 Rw7G039670 Rw7G039680 Rw7G039690 Rw7G039700 Rw7G039740 Rw7G039750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 878
AatII GACGTC 1 cut(s) 156
AccB1I GGYRCC 1 cut(s) 484
AccI GTMKAC 3 cut(s) 189, 351, 621
AciI CCGC 3 cut(s) 114, 182, 834
AclWI GGATC 2 cut(s) 265, 719
AcuI CTGAAG 1 cut(s) 346
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 1 cut(s) 683
AfiI CCNNNNNNNGG 3 cut(s) 19, 282, 466
AgsI TTSAA 2 cut(s) 19, 127
AjnI CCWGG 1 cut(s) 867
AloI GAACNNNNNNTCC 2 cut(s) 138, 170
AluBI AGCT 4 cut(s) 101, 394, 803, 899
AluI AGCT 4 cut(s) 101, 394, 803, 899
Alw26I GTCTC 2 cut(s) 296, 500
AlwI GGATC 2 cut(s) 265, 719
AlwNI CAGNNNCTG 1 cut(s) 684
AoxI GGCC 4 cut(s) 284, 452, 647, 831
ApeKI GCWGC 1 cut(s) 98
AspS9I GGNCC 2 cut(s) 200, 547
AsuHPI GGTGA 2 cut(s) 457, 554
AvaII GGWCC 2 cut(s) 200, 547
AxyI CCTNAGG 1 cut(s) 543
BanI GGYRCC 1 cut(s) 484
BanII GRGCYC 2 cut(s) 339, 417
BbsI GAAGAC 1 cut(s) 437
BbvI GCAGC 1 cut(s) 110
BccI CCATC 5 cut(s) 125, 203, 703, 760, 871
BceAI ACGGC 1 cut(s) 260
BciT130I CCWGG 1 cut(s) 869
BclI TGATCA 1 cut(s) 447
BcoDI GTCTC 2 cut(s) 296, 500
BfaI CTAG 3 cut(s) 461, 806, 896
BfmI CTRYAG 1 cut(s) 676
BisI GCNGC 2 cut(s) 99, 834
BlsI GCNGC 2 cut(s) 100, 835
Bme1390I CCNGG 1 cut(s) 869
Bme18I GGWCC 2 cut(s) 200, 547
BmgT120I GGNCC 2 cut(s) 200, 547
BmiI GGNNCC 2 cut(s) 202, 486
BmrFI CCNGG 1 cut(s) 869
BmsI GCATC 2 cut(s) 378, 482
BpiI GAAGAC 1 cut(s) 437
BplI GAGNNNNNCTC 2 cut(s) 326, 358
Bsa29I ATCGAT 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 153
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 282, 466
Bse118I RCCGGY 1 cut(s) 487
Bse1I ACTGG 2 cut(s) 185, 844
Bse21I CCTNAGG 1 cut(s) 543
Bse3DI GCAATG 1 cut(s) 831
BseBI CCWGG 1 cut(s) 869
BseCI ATCGAT 1 cut(s) 69
BseGI GGATG 1 cut(s) 714
BseLI CCNNNNNNNGG 3 cut(s) 19, 282, 466
BseMI GCAATG 1 cut(s) 831
BseMII CTCAG 4 cut(s) 404, 548, 557, 837
BseNI ACTGG 2 cut(s) 185, 844
BseRI GAGGAG 1 cut(s) 518
BseXI GCAGC 1 cut(s) 110
BseYI CCCAGC 1 cut(s) 565
Bsh1285I CGRYCG 1 cut(s) 612
BshFI GGCC 4 cut(s) 286, 454, 649, 833
BshNI GGYRCC 1 cut(s) 484
BshVI ATCGAT 1 cut(s) 69
BsiEI CGRYCG 1 cut(s) 612
BsiSI CCGG 1 cut(s) 488
BslI CCNNNNNNNGG 3 cut(s) 19, 282, 466
BsmAI GTCTC 2 cut(s) 296, 500
BsnI GGCC 4 cut(s) 286, 454, 649, 833
Bsp1286I GDGCHC 2 cut(s) 339, 417
Bsp143I GATC 7 cut(s) 66, 257, 396, 447, 570, 639, 724
BspACI CCGC 3 cut(s) 114, 182, 834
BspANI GGCC 4 cut(s) 286, 454, 649, 833
BspCNI CTCAG 4 cut(s) 403, 549, 556, 838
BspDI ATCGAT 1 cut(s) 69
BspLI GGNNCC 2 cut(s) 202, 486
BspPI GGATC 2 cut(s) 265, 719
BspT107I GGYRCC 1 cut(s) 484
BsrDI GCAATG 1 cut(s) 831
BsrFI RCCGGY 1 cut(s) 487
BsrI ACTGG 2 cut(s) 185, 844
BssAI RCCGGY 1 cut(s) 487
BssMI GATC 7 cut(s) 66, 257, 396, 447, 570, 639, 724
BssNI GRCGYC 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 869
Bst4CI ACNGT 3 cut(s) 593, 610, 686
Bst6I CTCTTC 2 cut(s) 294, 809
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 3 cut(s) 417, 489, 647
BstDEI CTNAG 6 cut(s) 102, 390, 543, 557, 729, 846
BstF5I GGATG 1 cut(s) 714
BstKTI GATC 7 cut(s) 69, 260, 399, 450, 573, 642, 727
BstMAI GTCTC 2 cut(s) 296, 500
BstMBI GATC 7 cut(s) 66, 257, 396, 447, 570, 639, 724
BstMCI CGRYCG 1 cut(s) 612
BstMWI GCNNNNNNNGC 2 cut(s) 107, 830
BstNI CCWGG 1 cut(s) 869
BstSCI CCNGG 1 cut(s) 867
BstSFI CTRYAG 1 cut(s) 676
BstV1I GCAGC 1 cut(s) 110
BstV2I GAAGAC 1 cut(s) 437
Bsu15I ATCGAT 1 cut(s) 69
Bsu36I CCTNAGG 1 cut(s) 543
BsuRI GGCC 4 cut(s) 286, 454, 649, 833
BsuTUI ATCGAT 1 cut(s) 69
BtsCI GGATG 1 cut(s) 714
BtsIMutI CAGTG 2 cut(s) 598, 837
Cac8I GCNNGC 3 cut(s) 417, 489, 647
CaiI CAGNNNCTG 1 cut(s) 684
Cfr10I RCCGGY 1 cut(s) 487
Cfr13I GGNCC 2 cut(s) 200, 547
ClaI ATCGAT 1 cut(s) 69
Csp6I GTAC 1 cut(s) 682
CviAII CATG 1 cut(s) 64
CviQI GTAC 1 cut(s) 682
DdeI CTNAG 6 cut(s) 102, 390, 543, 557, 729, 846
DpnI GATC 7 cut(s) 68, 259, 398, 449, 572, 641, 726
DpnII GATC 7 cut(s) 66, 257, 396, 447, 570, 639, 724
DrdI GACNNNNNNGTC 1 cut(s) 878
DseDI GACNNNNNNGTC 1 cut(s) 878
Eam1104I CTCTTC 2 cut(s) 294, 809
EarI CTCTTC 2 cut(s) 294, 809
EciI GGCGGA 1 cut(s) 103
Eco147I AGGCCT 1 cut(s) 454
Eco24I GRGCYC 2 cut(s) 339, 417
Eco32I GATATC 2 cut(s) 10, 25
Eco47I GGWCC 2 cut(s) 200, 547
Eco57I CTGAAG 1 cut(s) 346
Eco81I CCTNAGG 1 cut(s) 543
EcoRII CCWGG 1 cut(s) 867
EcoRV GATATC 2 cut(s) 10, 25
EcoT38I GRGCYC 2 cut(s) 339, 417
FaeI CATG 1 cut(s) 67
FaiI YATR 8 cut(s) 65, 143, 524, 575, 741, 743, 863, 905
FatI CATG 1 cut(s) 63
FbaI TGATCA 1 cut(s) 447
FblI GTMKAC 3 cut(s) 189, 351, 621
Fnu4HI GCNGC 2 cut(s) 99, 834
FokI GGATG 1 cut(s) 721
FriOI GRGCYC 2 cut(s) 339, 417
Fsp4HI GCNGC 2 cut(s) 99, 834
FspBI CTAG 3 cut(s) 461, 806, 896
GluI GCNGC 2 cut(s) 99, 834
GsaI CCCAGC 1 cut(s) 569
HaeIII GGCC 4 cut(s) 286, 454, 649, 833
HapII CCGG 1 cut(s) 488
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 1 cut(s) 67
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 3 cut(s) 326, 559, 586
HpaII CCGG 1 cut(s) 488
HphI GGTGA 2 cut(s) 457, 554
Hpy166II GTNNAC 4 cut(s) 190, 352, 358, 622
Hpy188I TCNGA 4 cut(s) 41, 200, 365, 847
Hpy188III TCNNGA 8 cut(s) 83, 124, 314, 545, 556, 583, 613, 806
Hpy8I GTNNAC 4 cut(s) 190, 352, 358, 622
Hpy99I CGWCG 3 cut(s) 155, 610, 662
HpyAV CCTTC 5 cut(s) 13, 43, 289, 740, 773
HpyCH4III ACNGT 3 cut(s) 593, 610, 686
HpyCH4IV ACGT 3 cut(s) 153, 354, 434
HpyCH4V TGCA 3 cut(s) 98, 247, 690
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 830
HpyF3I CTNAG 6 cut(s) 102, 390, 543, 557, 729, 846
HpySE526I ACGT 3 cut(s) 153, 354, 434
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 1 cut(s) 67
KroI GCCGGC 1 cut(s) 487
KroNI GCCGGC 1 cut(s) 489
Ksp22I TGATCA 1 cut(s) 447
Kzo9I GATC 7 cut(s) 66, 257, 396, 447, 570, 639, 724
LmnI GCTCC 1 cut(s) 904
Lsp1109I GCAGC 1 cut(s) 110
LweI GCATC 2 cut(s) 378, 482
MaeI CTAG 3 cut(s) 461, 806, 896
MaeII ACGT 3 cut(s) 153, 354, 434
MaeIII GTNAC 1 cut(s) 560
MalI GATC 7 cut(s) 68, 259, 398, 449, 572, 641, 726
MboI GATC 7 cut(s) 66, 257, 396, 447, 570, 639, 724
MboII GAAGA 9 cut(s) 71, 311, 442, 646, 788, 805, 808, 826, 884
MhlI GDGCHC 2 cut(s) 339, 417
MluCI AATT 2 cut(s) 93, 910
MlyI GAGTC 3 cut(s) 320, 568, 580
MmeI TCCRAC 1 cut(s) 303
MroNI GCCGGC 1 cut(s) 487
MslI CAYNNNNRTG 2 cut(s) 374, 377
MspA1I CMGCKG 1 cut(s) 394
MspI CCGG 1 cut(s) 488
MspR9I CCNGG 1 cut(s) 869
MvaI CCWGG 1 cut(s) 869
MwoI GCNNNNNNNGC 2 cut(s) 107, 830
NaeI GCCGGC 1 cut(s) 489
NdeII GATC 7 cut(s) 66, 257, 396, 447, 570, 639, 724
NgoMIV GCCGGC 1 cut(s) 487
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 2 cut(s) 202, 486
NmuCI GTSAC 1 cut(s) 560
PceI AGGCCT 1 cut(s) 454
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PdiI GCCGGC 1 cut(s) 489
PflFI GACNNNGTC 1 cut(s) 551
PkrI GCNGC 2 cut(s) 100, 835
PleI GAGTC 3 cut(s) 320, 567, 580
PpsI GAGTC 3 cut(s) 320, 567, 580
Psp6I CCWGG 1 cut(s) 867
PspFI CCCAGC 1 cut(s) 565
PspGI CCWGG 1 cut(s) 867
PspN4I GGNNCC 2 cut(s) 202, 486
PspPI GGNCC 2 cut(s) 200, 547
PsrI GAACNNNNNNTAC 2 cut(s) 665, 697
PstNI CAGNNNCTG 1 cut(s) 684
PsyI GACNNNGTC 1 cut(s) 551
PvuII CAGCTG 1 cut(s) 394
RsaI GTAC 1 cut(s) 683
RsaNI GTAC 1 cut(s) 682
RseI CAYNNNNRTG 2 cut(s) 374, 377
SatI GCNGC 2 cut(s) 99, 834
Sau3AI GATC 7 cut(s) 66, 257, 396, 447, 570, 639, 724
Sau96I GGNCC 2 cut(s) 200, 547
SchI GAGTC 3 cut(s) 320, 568, 580
ScrFI CCNGG 1 cut(s) 869
SduI GDGCHC 2 cut(s) 339, 417
SfaNI GCATC 2 cut(s) 378, 482
SfcI CTRYAG 1 cut(s) 676
SinI GGWCC 2 cut(s) 200, 547
SmiMI CAYNNNNRTG 2 cut(s) 374, 377
Sse9I AATT 2 cut(s) 93, 910
SseBI AGGCCT 1 cut(s) 454
SsiI CCGC 3 cut(s) 114, 182, 834
SspMI CTAG 3 cut(s) 461, 806, 896
StuI AGGCCT 1 cut(s) 454
StyD4I CCNGG 1 cut(s) 867
TaaI ACNGT 3 cut(s) 593, 610, 686
TaiI ACGT 3 cut(s) 156, 357, 437
TaqI TCGA 6 cut(s) 69, 159, 399, 605, 612, 660
TasI AATT 2 cut(s) 93, 910
TauI GCSGC 1 cut(s) 836
TscAI CASTG 2 cut(s) 598, 844
TseFI GTSAC 1 cut(s) 560
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 5 cut(s) 17, 25, 806, 843, 878
TspRI CASTG 2 cut(s) 598, 844
Tth111I GACNNNGTC 1 cut(s) 551
VpaK11BI GGWCC 2 cut(s) 200, 547
XbaI TCTAGA 1 cut(s) 805
XcmI CCANNNNNNNNNTGG 1 cut(s) 642
XmiI GTMKAC 3 cut(s) 189, 351, 621
XspI CTAG 3 cut(s) 461, 806, 896
ZraI GACGTC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.