Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000553

Physical Location & Seq

Genomic Coordinates Reverse (-)

24889560 .. 24889856

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0264400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAAATTGAGTGTCGCCGGATTTATTTCCGTGTGGCAACATTGTGGGAAAGCTGTTCTATTTGCAATGATGCTTCTTCGTTATAGAGTTATCTTTCCGGTATGTCACCGCTATCTCAAAGCAAATAGAGTAGTCATTTGTGCACTCTTTGCTAATTGGTGCTTGTCAGAGTACATAGATTTTGTAGAGAGTCTTGGTATTATTTCAGGATGTTCTCTTTATGCTTACTGTAATCTGGGGTTCAGGCTCTACGTCCCCCCCCCCTTGTATTCTGTAATTTCATTAATCAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

98

Amino Acids

11.15

Weight (kDa)

9.17

Isoelectric Point (pI)

23.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22340 AT1G22360 AT1G22360 AT1G22370 AT1G22370 AT1G22380 AT1G22400 AT1G78270
fragaria_vesca	FvH4_5g36970 FvH4_5g36972 FvH4_5g36980 FvH4_5g37000 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020
malus_domestica	MD08G1185000.v1.1 MD08G1185500.v1.1 MD08G1185600.v1.1 MD08G1185700.v1.1 MD15G1371800.v1.1
prunus_persica	Prupe.1G519500_v2.0.a1 Prupe.1G519600_v2.0.a1 Prupe.1G519700_v2.0.a1 Prupe.1G519800_v2.0.a1 Prupe.1G519900_v2.0.a1 Prupe.1G520000_v2.0.a1 Prupe.1G520100_v2.0.a1 Prupe.1G520200_v2.0.a1 Prupe.1G520300_v2.0.a1 Prupe.1G520400_v2.0.a1 Prupe.1G520400_v2.0.a1
pyrus_communis	pycom08g15890 pycom08g15930 pycom15g33310
rosa_chinensis	RchiOBHm_Chr7g0231031 RchiOBHm_Chr7g0231091 RchiOBHm_Chr7g0243731 RchiOBHm_Chr7g0243761 RchiOBHm_Chr7g0243781 RchiOBHm_Chr7g0243791 RchiOBHm_Chr7g0243821
rosa_laevigata	RLG00000000832 RLG00000000834 RLG00000000835 RLG00000000836 RLG00000000837 RLG00000000838 RLG00000001435 RLG00000001436 RLG00000001650
rosa_multiflora	Rmu_co8142950.1_g000001 Rmu_sc0000780.1_g000001 Rmu_sc0000780.1_g000003 Rmu_sc0000780.1_g000006 Rmu_sc0000780.1_g000007 Rmu_sc0012403.1_g000014
rosa_roxburghii	Rroxscaffold_3G00221740 Rroxscaffold_3G00221770 Rroxscaffold_3G00221810 Rroxscaffold_3G00221820
rosa_rugosa	Rorug07G0264200 Rorug07G0264400 Rorug07G0321000 Rorug07G0321300 Rorug07G0321600 Rorug07G0321700 Rorug07G0321800
rosa_samantha	Rh7CG437000 Rh7CG437300 Rh7CG493400 Rh7CG493800 Rh7CG494000 Rh7CG494500
rosa_wichuraiana	Rw7G034550 Rw7G039670 Rw7G039680 Rw7G039690 Rw7G039700 Rw7G039740 Rw7G039750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	109
AfaI	GTAC	1 cut(s)	173
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Alw21I	GWGCWC	1 cut(s)	145
Alw44I	GTGCAC	1 cut(s)	141
ApaLI	GTGCAC	1 cut(s)	141
AseI	ATTAAT	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	98
BaeGI	GKGCMC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	145
BmsI	GCATC	1 cut(s)	60
BsaWI	WCCGGW	1 cut(s)	97
Bse3DI	GCAATG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	215
BseMI	GCAATG	1 cut(s)	72
BseSI	GKGCMC	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	145
BsiSI	CCGG	2 cut(s)	18, 98
BslFI	GGGAC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	145
BspACI	CCGC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	230
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	215
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstSLI	GKGCMC	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	172
CviJI	RGCY	3 cut(s)	53, 247, 293
CviKI_1	RGCY	3 cut(s)	53, 247, 293
CviQI	GTAC	1 cut(s)	172
FaiI	YATR	4 cut(s)	84, 103, 176, 222
FaqI	GGGAC	1 cut(s)	239
FokI	GGATG	1 cut(s)	222
HapII	CCGG	2 cut(s)	18, 98
HinfI	GANTC	1 cut(s)	190
HpaII	CCGG	2 cut(s)	18, 98
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	1 cut(s)	207
Hpy8I	GTNNAC	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	2 cut(s)	65, 143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpySE526I	ACGT	1 cut(s)	252
LpnPI	CCDG	5 cut(s)	31, 111, 192, 221, 229
LweI	GCATC	1 cut(s)	60
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	104
MboII	GAAGA	1 cut(s)	68
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	3 cut(s)	5, 154, 276
MlyI	GAGTC	1 cut(s)	199
MseI	TTAA	1 cut(s)	284
MspI	CCGG	2 cut(s)	18, 98
MwoI	GCNNNNNNNGC	1 cut(s)	149
NmuCI	GTSAC	1 cut(s)	104
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
PshBI	ATTAAT	1 cut(s)	284
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	284
SchI	GAGTC	1 cut(s)	199
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	2 cut(s)	55, 255
SfaNI	GCATC	1 cut(s)	60
SgeI	CNNG	9 cut(s)	30, 43, 110, 175, 206, 219, 248, 256, 277
Sse9I	AATT	3 cut(s)	5, 154, 276
SsiI	CCGC	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	1 cut(s)	255
TasI	AATT	3 cut(s)	5, 154, 276
TatI	WGTACW	1 cut(s)	171
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TseFI	GTSAC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	2 cut(s)	17, 270
TspGWI	ACGGA	1 cut(s)	19
VneI	GTGCAC	1 cut(s)	141
VspI	ATTAAT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.