Rorug07G0264200

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000553
Physical Location & Seq
Forward (+)
24856044 .. 24862526
6483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0264200.1

Sequence Viewer

Length: 516 bp
ATGATGCAGCGATTATGCTCCAAGCTTCGAAGTTTACCCTTACAATCAGCCCACAAGACTCTACCATCTCTCTCCTCTTCCTCTTCCTTGCTTCGATCTTCTCGCCCTCTTCATTTCGCTTCAAATAGCAGCCACACATGGAGCTCAACGTCCCTCTTCAATGCCCATTCACCAACCCAGCCTTCACTGCTCCTCGCCTCTCTTCGCTCTTCAACATTTCCCATCTCAGCTTGCCAGATGGTTCAAGTGCGGCATGTTTCGTCAAGCGAGCGTAAGAAGAGGAGAAAGCCAATGACACCAGTTACTTCCAAGATAAAGAAATACAAAATCAAGGGTTACTCGTCTTACAAGTCCCGGTTTAAGTTATTGAATGATGGCACTATTCGACGCTGGAGGGAGGGGAAGCGGCACAATGCACATTTGAAGTCGAAGATATCCAAGCGTAGACTGAGACTACCTGCCCTCGTCCATCCTGCTTATGCCAAAGTGATGAAGAAGCTCAATTTTTGTGCTTGA

Protein Analysis

171

Amino Acids

19.5

Weight (kDa)

11.78

Isoelectric Point (pI)

70.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L35p PF01632 108 - 167 1.8e-14 Ribosomal protein L35
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000553)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22340 AT1G22360 AT1G22360 AT1G22370 AT1G22370 AT1G22380 AT1G22400 AT1G78270
fragaria_vesca FvH4_5g36970 FvH4_5g36972 FvH4_5g36980 FvH4_5g37000 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020 FvH4_5g37020
malus_domestica MD08G1185000.v1.1 MD08G1185500.v1.1 MD08G1185600.v1.1 MD08G1185700.v1.1 MD15G1371800.v1.1
prunus_persica Prupe.1G519500_v2.0.a1 Prupe.1G519600_v2.0.a1 Prupe.1G519700_v2.0.a1 Prupe.1G519800_v2.0.a1 Prupe.1G519900_v2.0.a1 Prupe.1G520000_v2.0.a1 Prupe.1G520100_v2.0.a1 Prupe.1G520200_v2.0.a1 Prupe.1G520300_v2.0.a1 Prupe.1G520400_v2.0.a1 Prupe.1G520400_v2.0.a1
pyrus_communis pycom08g15890 pycom08g15930 pycom15g33310
rosa_chinensis RchiOBHm_Chr7g0231031 RchiOBHm_Chr7g0231091 RchiOBHm_Chr7g0243731 RchiOBHm_Chr7g0243761 RchiOBHm_Chr7g0243781 RchiOBHm_Chr7g0243791 RchiOBHm_Chr7g0243821
rosa_laevigata RLG00000000832 RLG00000000834 RLG00000000835 RLG00000000836 RLG00000000837 RLG00000000838 RLG00000001435 RLG00000001436 RLG00000001650
rosa_multiflora Rmu_co8142950.1_g000001 Rmu_sc0000780.1_g000001 Rmu_sc0000780.1_g000003 Rmu_sc0000780.1_g000006 Rmu_sc0000780.1_g000007 Rmu_sc0012403.1_g000014
rosa_roxburghii Rroxscaffold_3G00221740 Rroxscaffold_3G00221770 Rroxscaffold_3G00221810 Rroxscaffold_3G00221820
rosa_rugosa Rorug07G0264200 Rorug07G0264400 Rorug07G0321000 Rorug07G0321300 Rorug07G0321600 Rorug07G0321700 Rorug07G0321800
rosa_samantha Rh7CG437000 Rh7CG437300 Rh7CG493400 Rh7CG493800 Rh7CG494000 Rh7CG494500
rosa_wichuraiana Rw7G034550 Rw7G039670 Rw7G039680 Rw7G039690 Rw7G039700 Rw7G039740 Rw7G039750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 466
AccI GTMKAC 1 cut(s) 445
AciI CCGC 2 cut(s) 250, 406
AgsI TTSAA 6 cut(s) 123, 160, 213, 245, 370, 424
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
AluBI AGCT 4 cut(s) 25, 144, 230, 499
AluI AGCT 4 cut(s) 25, 144, 230, 499
Alw21I GWGCWC 1 cut(s) 146
Alw26I GTCTC 1 cut(s) 445
ApeKI GCWGC 2 cut(s) 7, 129
AsuC2I CCSGG 1 cut(s) 355
AsuHPI GGTGA 1 cut(s) 162
AsuII TTCGAA 1 cut(s) 28
BanII GRGCYC 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 19, 141
BccI CCATC 5 cut(s) 73, 230, 232, 368, 477
BcnI CCSGG 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 445
BfuAI ACCTGC 1 cut(s) 466
BisI GCNGC 4 cut(s) 8, 130, 251, 407
BlsI GCNGC 4 cut(s) 9, 131, 252, 408
Bme1390I CCNGG 1 cut(s) 355
BmrFI CCNGG 1 cut(s) 355
BpmI CTGGAG 1 cut(s) 412
Bpu14I TTCGAA 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 355
Bse1I ACTGG 1 cut(s) 299
BseGI GGATG 1 cut(s) 469
BseMII CTCAG 2 cut(s) 240, 440
BseNI ACTGG 1 cut(s) 299
BseRI GAGGAG 3 cut(s) 64, 182, 295
BseXI GCAGC 2 cut(s) 19, 141
BseYI CCCAGC 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 146
BsiSI CCGG 1 cut(s) 355
BslFI GGGAC 2 cut(s) 136, 337
BsmAI GTCTC 1 cut(s) 445
BsmFI GGGAC 2 cut(s) 136, 337
Bsp119I TTCGAA 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 1 cut(s) 95
BspACI CCGC 2 cut(s) 250, 406
BspCNI CTCAG 2 cut(s) 239, 441
BspMI ACCTGC 1 cut(s) 466
BspQI GCTCTTC 1 cut(s) 214
BspT104I TTCGAA 1 cut(s) 28
BsrI ACTGG 1 cut(s) 299
BssMI GATC 1 cut(s) 95
Bst6I CTCTTC 7 cut(s) 82, 88, 114, 161, 207, 214, 272
BstBI TTCGAA 1 cut(s) 28
BstC8I GCNNGC 2 cut(s) 232, 269
BstDEI CTNAG 2 cut(s) 226, 449
BstF5I GGATG 1 cut(s) 469
BstKTI GATC 1 cut(s) 98
BstMAI GTCTC 1 cut(s) 445
BstMBI GATC 1 cut(s) 95
BstMWI GCNNNNNNNGC 1 cut(s) 187
BstNSI RCATGY 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 353
BstV1I GCAGC 2 cut(s) 19, 141
BtsCI GGATG 1 cut(s) 469
BtsI GCAGTG 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 185
BveI ACCTGC 1 cut(s) 466
Cac8I GCNNGC 2 cut(s) 232, 269
CseI GACGC 1 cut(s) 396
CviAII CATG 2 cut(s) 138, 254
CviJI RGCY 8 cut(s) 25, 50, 132, 144, 181, 230, 289, 499
CviKI_1 RGCY 8 cut(s) 25, 50, 132, 144, 181, 230, 289, 499
DdeI CTNAG 2 cut(s) 226, 449
DpnI GATC 1 cut(s) 97
DpnII GATC 1 cut(s) 95
Eam1104I CTCTTC 7 cut(s) 82, 88, 114, 161, 207, 214, 272
EarI CTCTTC 7 cut(s) 82, 88, 114, 161, 207, 214, 272
Ecl136II GAGCTC 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 146
Eco32I GATATC 1 cut(s) 435
Eco53kI GAGCTC 1 cut(s) 144
EcoICRI GAGCTC 1 cut(s) 144
EcoRV GATATC 1 cut(s) 435
EcoT38I GRGCYC 1 cut(s) 146
FaeI CATG 2 cut(s) 141, 257
FaiI YATR 4 cut(s) 16, 139, 255, 480
FaqI GGGAC 2 cut(s) 136, 337
FatI CATG 2 cut(s) 137, 253
FblI GTMKAC 1 cut(s) 445
Fnu4HI GCNGC 4 cut(s) 8, 130, 251, 407
FokI GGATG 1 cut(s) 456
FriOI GRGCYC 1 cut(s) 146
Fsp4HI GCNGC 4 cut(s) 8, 130, 251, 407
GluI GCNGC 4 cut(s) 8, 130, 251, 407
GsaI CCCAGC 1 cut(s) 181
GsuI CTGGAG 1 cut(s) 412
HapII CCGG 1 cut(s) 355
HgaI GACGC 1 cut(s) 396
Hin1II CATG 2 cut(s) 141, 257
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 1 cut(s) 58
HpaII CCGG 1 cut(s) 355
HphI GGTGA 1 cut(s) 162
Hpy166II GTNNAC 2 cut(s) 35, 446
Hpy8I GTNNAC 2 cut(s) 35, 446
Hpy99I CGWCG 1 cut(s) 390
HpyAV CCTTC 1 cut(s) 192
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 2 cut(s) 7, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 187
HpyF3I CTNAG 2 cut(s) 226, 449
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 2 cut(s) 141, 257
Kzo9I GATC 1 cut(s) 95
LguI GCTCTTC 1 cut(s) 214
LmnI GCTCC 3 cut(s) 23, 141, 195
LpnPI CCDG 7 cut(s) 191, 248, 312, 368, 376, 471, 486
Lsp1109I GCAGC 2 cut(s) 19, 141
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 2 cut(s) 301, 335
MalI GATC 1 cut(s) 97
MboI GATC 1 cut(s) 95
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 1 cut(s) 502
MlyI GAGTC 1 cut(s) 52
MseI TTAA 1 cut(s) 360
MspI CCGG 1 cut(s) 355
MspR9I CCNGG 1 cut(s) 355
MwoI GCNNNNNNNGC 1 cut(s) 187
NciI CCSGG 1 cut(s) 355
NdeII GATC 1 cut(s) 95
NlaIII CATG 2 cut(s) 141, 257
NspI RCATGY 1 cut(s) 257
NspV TTCGAA 1 cut(s) 28
PciSI GCTCTTC 1 cut(s) 214
PkrI GCNGC 4 cut(s) 9, 131, 252, 408
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Psp124BI GAGCTC 1 cut(s) 146
PspFI CCCAGC 1 cut(s) 177
SacI GAGCTC 1 cut(s) 146
SapI GCTCTTC 1 cut(s) 214
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 4 cut(s) 8, 130, 251, 407
Sau3AI GATC 1 cut(s) 95
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 355
SduI GDGCHC 1 cut(s) 146
SetI ASST 6 cut(s) 27, 146, 152, 232, 460, 501
SfuI TTCGAA 1 cut(s) 28
Sse9I AATT 1 cut(s) 502
SsiI CCGC 2 cut(s) 250, 406
SstI GAGCTC 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 353
TaiI ACGT 1 cut(s) 152
TaqI TCGA 4 cut(s) 28, 94, 385, 428
TasI AATT 1 cut(s) 502
TauI GCSGC 2 cut(s) 253, 409
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TscAI CASTG 1 cut(s) 192
TseI GCWGC 2 cut(s) 7, 129
TspDTI ATGAA 2 cut(s) 101, 506
TspRI CASTG 1 cut(s) 192
XceI RCATGY 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.