Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Reverse (-)

43218829 .. 43220782

Gene Structure 1954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0259500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCAATGGCACTCAGACCCATCGACAATGCTCTCCCAATTACACCAGAAAGGCCCAAGAAGCCAACCAAAGTTGCTCTTCCGATTCAAAATCAATCTGATTTGGGCGTAAATGATGAAAACAAGGCTCCACTTCCGGCGGCAACCGCTGAAGCCACCATTGATTATATCTCCTCAGAGAATCTCAAACCCATTTCAGACCCTGATTCCAAGATTCAGAGCTTGATTGAAGGACTGGATTCAAAGGATTGGACCAAAGTCTGCGAGTCTCTGAACAATGCTAGGCGTTTTGCTCTGTTTCACTCTGCTCTTTTGGTGCCTACTCTAGAGAAAGTGATGGTGGTACTTGTTAAGTCTATGAAGAATCCGAGGAGTGCTCTGATCAAGACCTCCATCATGGCTTCGGCCGATTTCTTCACTGCCTTTGGTGACAGTTTGCTTGACTCCACCACCTCTGATGCATTTGACCAATTGCTGCTGCAATTGCTGCTGAAGGCCTCACAAGACAAGAGGTTTGTTTGTGAAGAAGCAGACAAGGCGCTAAGCGCAATGGTGAAGTCCTTGACTCCTCTGCCTCTGCTTCATAGGCTTAAAGCCTATGTCACCCATGCCCACCTCAAAGTCAGAGCCAAAGCTGCCATTTCCATCTCAACTTGTGTCTCTAAGATGGGGCTGGAAGGAATGAAAGATTATGGACTGGTTGCTCTGATTAAAATGGCTGCGGATTCGCTGAATGATAGGCTGCCTGAGGCAAGAGAAGCGGCAAGGAGTATTGTGACTTCGGTGTACAATGCCTATACTGAGAATGAAGAGGAGAAGCAGGAGATATGGCTGAGCTTTTGCGAATCTAATTTGACACCAATTCATGCTCATGCCATGGTCAAGTTTACTTCTTCTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

300

Amino Acids

32.97

Weight (kDa)

6.61

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	316
AciI	CCGC	4 cut(s)	140, 147, 722, 761
AcoI	YGGCCR	1 cut(s)	405
AcuI	CTGAAG	2 cut(s)	171, 512
AfaI	GTAC	2 cut(s)	345, 788
AgsI	TTSAA	3 cut(s)	89, 230, 243
AluBI	AGCT	3 cut(s)	222, 635, 837
AluI	AGCT	3 cut(s)	222, 635, 837
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	2 cut(s)	273, 664
AlwNI	CAGNNNCTG	1 cut(s)	203
AoxI	GGCC	3 cut(s)	53, 405, 495
ApeKI	GCWGC	6 cut(s)	475, 478, 487, 635, 719, 742
ArsI	GACNNNNNNTTYG	2 cut(s)	497, 529
AspLEI	GCGC	2 cut(s)	541, 548
AspS9I	GGNCC	2 cut(s)	54, 252
AsuHPI	GGTGA	3 cut(s)	440, 565, 595
AvaII	GGWCC	1 cut(s)	252
AxyI	CCTNAGG	1 cut(s)	747
BanI	GGYRCC	1 cut(s)	316
BarI	GAAGNNNNNNTAC	2 cut(s)	763, 795
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	6 cut(s)	462, 465, 474, 622, 706, 729
BccI	CCATC	5 cut(s)	29, 331, 401, 653, 661
BclI	TGATCA	1 cut(s)	381
BcoDI	GTCTC	2 cut(s)	273, 664
BfaI	CTAG	2 cut(s)	282, 326
BfoI	RGCGCY	1 cut(s)	542
BisI	GCNGC	8 cut(s)	141, 476, 479, 488, 636, 720, 743, 762
BlpI	GCTNAGC	2 cut(s)	542, 833
BlsI	GCNGC	8 cut(s)	142, 477, 480, 489, 637, 721, 744, 763
Bme18I	GGWCC	1 cut(s)	252
BmgT120I	GGNCC	2 cut(s)	54, 252
BmiI	GGNNCC	2 cut(s)	129, 318
BmsI	GCATC	1 cut(s)	448
BoxI	GACNNNNGTC	1 cut(s)	257
BplI	GAGNNNNNCTC	2 cut(s)	361, 393
Bpu1102I	GCTNAGC	2 cut(s)	542, 833
BsaJI	CCNNGG	2 cut(s)	368, 876
Bse1I	ACTGG	2 cut(s)	240, 702
Bse21I	CCTNAGG	1 cut(s)	747
Bse3DI	GCAATG	2 cut(s)	12, 555
BseDI	CCNNGG	2 cut(s)	368, 876
BseMI	GCAATG	2 cut(s)	12, 555
BseMII	CTCAG	5 cut(s)	28, 189, 738, 792, 824
BseNI	ACTGG	2 cut(s)	240, 702
BseRI	GAGGAG	4 cut(s)	163, 385, 558, 827
BseX3I	CGGCCG	1 cut(s)	405
BseXI	GCAGC	6 cut(s)	462, 465, 474, 622, 706, 729
Bsh1285I	CGRYCG	1 cut(s)	408
BshFI	GGCC	3 cut(s)	55, 407, 497
BshNI	GGYRCC	1 cut(s)	316
BsiEI	CGRYCG	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	137
BsmAI	GTCTC	2 cut(s)	273, 664
BsnI	GGCC	3 cut(s)	55, 407, 497
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp1407I	TGTACA	1 cut(s)	786
Bsp143I	GATC	1 cut(s)	381
Bsp1720I	GCTNAGC	2 cut(s)	542, 833
Bsp19I	CCATGG	1 cut(s)	876
BspACI	CCGC	4 cut(s)	140, 147, 722, 761
BspANI	GGCC	3 cut(s)	55, 407, 497
BspCNI	CTCAG	5 cut(s)	27, 188, 739, 793, 825
BspLI	GGNNCC	2 cut(s)	129, 318
BspQI	GCTCTTC	1 cut(s)	84
BspT107I	GGYRCC	1 cut(s)	316
BsrDI	GCAATG	2 cut(s)	12, 555
BsrGI	TGTACA	1 cut(s)	786
BsrI	ACTGG	2 cut(s)	240, 702
BssECI	CCNNGG	2 cut(s)	368, 876
BssMI	GATC	1 cut(s)	381
BssT1I	CCWWGG	1 cut(s)	876
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	2 cut(s)	84, 804
BstAPI	GCANNNNNTGC	1 cut(s)	487
BstAUI	TGTACA	1 cut(s)	786
BstDEI	CTNAG	8 cut(s)	14, 175, 542, 663, 747, 801, 833, 897
BstDSI	CCRYGG	1 cut(s)	876
BstH2I	RGCGCY	1 cut(s)	542
BstHHI	GCGC	2 cut(s)	541, 548
BstKTI	GATC	1 cut(s)	384
BstMAI	GTCTC	2 cut(s)	273, 664
BstMBI	GATC	1 cut(s)	381
BstMCI	CGRYCG	1 cut(s)	408
BstMWI	GCNNNNNNNGC	9 cut(s)	61, 146, 484, 487, 536, 545, 586, 635, 758
BstPAI	GACNNNNGTC	1 cut(s)	257
BstV1I	GCAGC	6 cut(s)	462, 465, 474, 622, 706, 729
BstZI	CGGCCG	1 cut(s)	405
Bsu36I	CCTNAGG	1 cut(s)	747
BsuRI	GGCC	3 cut(s)	55, 407, 497
BtgI	CCRYGG	1 cut(s)	876
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	1 cut(s)	417
CaiI	CAGNNNCTG	1 cut(s)	203
CfoI	GCGC	2 cut(s)	541, 548
Cfr13I	GGNCC	2 cut(s)	54, 252
Csp6I	GTAC	2 cut(s)	344, 787
CviAII	CATG	5 cut(s)	397, 608, 866, 872, 877
CviQI	GTAC	2 cut(s)	344, 787
DdeI	CTNAG	8 cut(s)	14, 175, 542, 663, 747, 801, 833, 897
DpnI	GATC	1 cut(s)	383
DpnII	GATC	1 cut(s)	381
EaeI	YGGCCR	1 cut(s)	405
EagI	CGGCCG	1 cut(s)	405
Eam1104I	CTCTTC	2 cut(s)	84, 804
EarI	CTCTTC	2 cut(s)	84, 804
EclXI	CGGCCG	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	876
Eco147I	AGGCCT	1 cut(s)	497
Eco47I	GGWCC	1 cut(s)	252
Eco52I	CGGCCG	1 cut(s)	405
Eco57I	CTGAAG	2 cut(s)	171, 512
Eco81I	CCTNAGG	1 cut(s)	747
EcoT14I	CCWWGG	1 cut(s)	876
EcoT22I	ATGCAT	1 cut(s)	463
ErhI	CCWWGG	1 cut(s)	876
FaeI	CATG	5 cut(s)	400, 611, 869, 875, 880
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FatI	CATG	5 cut(s)	396, 607, 865, 871, 876
FbaI	TGATCA	1 cut(s)	381
Fnu4HI	GCNGC	8 cut(s)	141, 476, 479, 488, 636, 720, 743, 762
Fsp4HI	GCNGC	8 cut(s)	141, 476, 479, 488, 636, 720, 743, 762
FspBI	CTAG	2 cut(s)	282, 326
GlaI	GCGC	2 cut(s)	540, 547
GluI	GCNGC	8 cut(s)	141, 476, 479, 488, 636, 720, 743, 762
HaeII	RGCGCY	1 cut(s)	542
HaeIII	GGCC	3 cut(s)	55, 407, 497
HapII	CCGG	1 cut(s)	137
HhaI	GCGC	2 cut(s)	541, 548
Hin1II	CATG	5 cut(s)	400, 611, 869, 875, 880
Hin6I	GCGC	2 cut(s)	539, 546
HinP1I	GCGC	2 cut(s)	539, 546
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	3 cut(s)	440, 565, 595
Hpy166II	GTNNAC	2 cut(s)	787, 888
Hpy188III	TCNNGA	2 cut(s)	326, 385
Hpy8I	GTNNAC	2 cut(s)	787, 888
HpyAV	CCTTC	3 cut(s)	224, 487, 671
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4V	TGCA	2 cut(s)	461, 481
HpyF10VI	GCNNNNNNNGC	9 cut(s)	61, 146, 484, 487, 536, 545, 586, 635, 758
HpyF3I	CTNAG	8 cut(s)	14, 175, 542, 663, 747, 801, 833, 897
Hsp92II	CATG	5 cut(s)	400, 611, 869, 875, 880
HspAI	GCGC	2 cut(s)	539, 546
Ksp22I	TGATCA	1 cut(s)	381
Kzo9I	GATC	1 cut(s)	381
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	8 cut(s)	60, 150, 216, 221, 659, 683, 759, 806
Lsp1109I	GCAGC	6 cut(s)	462, 465, 474, 622, 706, 729
LweI	GCATC	1 cut(s)	448
MaeI	CTAG	2 cut(s)	282, 326
MaeIII	GTNAC	3 cut(s)	428, 601, 775
MalI	GATC	1 cut(s)	383
MboI	GATC	1 cut(s)	381
MboII	GAAGA	6 cut(s)	71, 373, 406, 536, 821, 885
MfeI	CAATTG	2 cut(s)	470, 482
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	5 cut(s)	39, 470, 482, 850, 861
MlyI	GAGTC	3 cut(s)	275, 437, 559
Mph1103I	ATGCAT	1 cut(s)	463
MseI	TTAA	3 cut(s)	351, 591, 711
MslI	CAYNNNNRTG	1 cut(s)	870
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	137
MunI	CAATTG	2 cut(s)	470, 482
MwoI	GCNNNNNNNGC	9 cut(s)	61, 146, 484, 487, 536, 545, 586, 635, 758
NcoI	CCATGG	1 cut(s)	876
NdeII	GATC	1 cut(s)	381
NlaIII	CATG	5 cut(s)	400, 611, 869, 875, 880
NlaIV	GGNNCC	2 cut(s)	129, 318
NmuCI	GTSAC	3 cut(s)	428, 601, 775
NsiI	ATGCAT	1 cut(s)	463
PceI	AGGCCT	1 cut(s)	497
PciSI	GCTCTTC	1 cut(s)	84
PfeI	GAWTC	8 cut(s)	85, 181, 206, 214, 239, 364, 725, 845
PkrI	GCNGC	8 cut(s)	142, 477, 480, 489, 637, 721, 744, 763
PleI	GAGTC	3 cut(s)	274, 437, 559
PpsI	GAGTC	3 cut(s)	274, 437, 559
PshAI	GACNNNNGTC	1 cut(s)	257
PspN4I	GGNNCC	2 cut(s)	129, 318
PspPI	GGNCC	2 cut(s)	54, 252
PstNI	CAGNNNCTG	1 cut(s)	203
RsaI	GTAC	2 cut(s)	345, 788
RsaNI	GTAC	2 cut(s)	344, 787
RseI	CAYNNNNRTG	1 cut(s)	870
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	3 cut(s)	351, 591, 711
SatI	GCNGC	8 cut(s)	141, 476, 479, 488, 636, 720, 743, 762
Sau3AI	GATC	1 cut(s)	381
Sau96I	GGNCC	2 cut(s)	54, 252
SchI	GAGTC	3 cut(s)	275, 437, 559
SduI	GDGCHC	1 cut(s)	379
SetI	ASST	7 cut(s)	224, 392, 455, 515, 618, 637, 839
SfaNI	GCATC	1 cut(s)	448
SinI	GGWCC	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	870
Sse9I	AATT	5 cut(s)	39, 470, 482, 850, 861
SseBI	AGGCCT	1 cut(s)	497
SsiI	CCGC	4 cut(s)	140, 147, 722, 761
SspMI	CTAG	2 cut(s)	282, 326
StuI	AGGCCT	1 cut(s)	497
StyI	CCWWGG	1 cut(s)	876
TaaI	ACNGT	1 cut(s)	434
TaqI	TCGA	1 cut(s)	24
TasI	AATT	5 cut(s)	39, 470, 482, 850, 861
TatI	WGTACW	1 cut(s)	786
TauI	GCSGC	2 cut(s)	143, 764
TfiI	GAWTC	8 cut(s)	85, 181, 206, 214, 239, 364, 725, 845
Tru1I	TTAA	3 cut(s)	351, 591, 711
Tru9I	TTAA	3 cut(s)	351, 591, 711
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	3 cut(s)	428, 601, 775
TseI	GCWGC	6 cut(s)	475, 478, 487, 635, 719, 742
Tsp45I	GTSAC	3 cut(s)	428, 601, 775
TspDTI	ATGAA	6 cut(s)	132, 374, 572, 698, 822, 854
TspRI	CASTG	1 cut(s)	424
VpaK11BI	GGWCC	1 cut(s)	252
XbaI	TCTAGA	1 cut(s)	325
XspI	CTAG	2 cut(s)	282, 326
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.