Rorug05G0157200

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
14674886 .. 14676402
1517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0157200.1

Sequence Viewer

Length: 1119 bp
ATGGTAAGAAAGATACTGTCTCCTCCATCAACAAGGGACTGCTGTGAGTTATCTGGTCACTCCCACAATCTAAATCTGAGAAAAAAACCGGCGGTATCTGATGCAGTACGAGCGCTTCCTTTTGATATCATCACTGAGATTTTGAGCTGGTTGCCTGTAGATTCTTTGCTAAGGTTCAAGTGTGTGTGCAAAAAATGGCGTTCCTTGCTTCTAGACTACAATTTCATTGCAAAACATATGGTTCGGGCGAGACCTCTGCAACTTTCCTATAAAAAAGAATGGAACCCTTACAATTATGATACGGTTCTTTATGATGAAAACTTCAAACATATTTCAGATGTGGCTGGCTTGCTTCTGGAGGAGAGTCTTACTTCTCGAGTTTTCCGAATCAGAAACTTTGCAACGCATCAAGTACTTTACTTGCCTGATGCACACGGGAAATCTAGGTCAATGGGTTTATTTTTTTATTCATCCACTGGTGAGTGTAAAGCGGCATGTTTTCATTGGAAACAGGAGGGTGACTCTGGCTTTGAAGTAGCCTTTGAAGTTCTAAGTATCGGAAAGGATGATCGATGGAGGACTCTGAAGCTGCCCAAGCAAAATGGCGAACCGTACGTGGGACGATATTTTACAGCAGCTAAGGAAGAAGGGGCCGCTCATCTGGTGGAAATTATTAGAGATGGACAAGATTTCAAGCTAGAAGTTCAATCTCTTGATATATGGAGTGAACGTTTCACCATTGCCACTCTGCCCCGGGGAGCTTTCTTAGACTTGAAAAGAGTTACAATTTTTCTTTGGAATTACTATGTAGCTGTTGCTGATATAGTAGAGGAATCCCTTAACGTCTTGGTGTTGGAAGACTTCAAGGAACACAAATGGAGGAAGATCATTGTTCCCTTGAAATTCTTGAAGGACAATCCAGGTTTAAAAGATGAGATTTGCCCTCAAGGAGTTTGGCTAAATGACCTCCAGTTGCACAATGGAATGAGAAAGTATATTCTCGTGTATGATATGGAAAGGAAGGTGATCAAGGCGACGCATACCAAGTCTGTGGAGAAAATATATGAATTCCGAAAGCCAAGCCTGGTTACTCTCAAGGGAATGAAGAATGAATACTAG

Protein Analysis

372

Amino Acids

43.34

Weight (kDa)

9.01

Isoelectric Point (pI)

37.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 38 - 72 6.9e-08 F-box-like
F-box PF00646 39 - 75 1.9e-10 F-box domain
FBA_3 PF08268 99 - 353 5.5e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 656
AciI CCGC 3 cut(s) 92, 491, 654
AclI AACGTT 1 cut(s) 730
AcsI RAATTY 2 cut(s) 902, 1067
AcuI CTGAAG 1 cut(s) 605
AfaI GTAC 3 cut(s) 108, 414, 614
AfeI AGCGCT 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 617
AjnI CCWGG 2 cut(s) 919, 1083
AluBI AGCT 6 cut(s) 147, 589, 638, 697, 761, 812
AluI AGCT 6 cut(s) 147, 589, 638, 697, 761, 812
Alw26I GTCTC 2 cut(s) 24, 244
Ama87I CYCGRG 2 cut(s) 375, 753
Aor51HI AGCGCT 1 cut(s) 114
AoxI GGCC 1 cut(s) 651
ApeKI GCWGC 2 cut(s) 589, 635
ApoI RAATTY 2 cut(s) 902, 1067
ArsI GACNNNNNNTTYG 2 cut(s) 512, 544
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 651
AsuC2I CCSGG 2 cut(s) 754, 755
AsuHPI GGTGA 4 cut(s) 491, 530, 727, 1036
AvaI CYCGRG 2 cut(s) 375, 753
BarI GAAGNNNNNNTAC 3 cut(s) 99, 131, 1097
BauI CACGAG 1 cut(s) 1001
BbsI GAAGAC 1 cut(s) 864
BbvI GCAGC 2 cut(s) 576, 647
BccI CCATC 3 cut(s) 34, 567, 674
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BciT130I CCWGG 2 cut(s) 921, 1085
BclI TGATCA 1 cut(s) 1026
BcnI CCSGG 2 cut(s) 754, 755
BcoDI GTCTC 2 cut(s) 24, 244
BfaI CTAG 4 cut(s) 212, 444, 698, 1117
BfmI CTRYAG 1 cut(s) 156
BfoI RGCGCY 1 cut(s) 116
BisI GCNGC 4 cut(s) 492, 590, 636, 654
BlsI GCNGC 4 cut(s) 493, 591, 637, 655
BmcAI AGTACT 1 cut(s) 414
Bme1390I CCNGG 4 cut(s) 754, 755, 921, 1085
BmeT110I CYCGRG 2 cut(s) 375, 753
BmgT120I GGNCC 1 cut(s) 651
BmiI GGNNCC 2 cut(s) 284, 652
BmrFI CCNGG 4 cut(s) 754, 755, 921, 1085
BmsI GCATC 3 cut(s) 91, 415, 418
BpiI GAAGAC 1 cut(s) 864
BplI GAGNNNNNCTC 2 cut(s) 506, 538
BpmI CTGGAG 2 cut(s) 377, 953
Bpu10I CCTNAGC 2 cut(s) 170, 639
BpuEI CTTGAG 2 cut(s) 930, 1079
BpuMI CCSGG 2 cut(s) 754, 755
Bsa29I ATCGAT 1 cut(s) 571
BsaAI YACGTR 1 cut(s) 616
BsaI GGTCTC 1 cut(s) 244
BsaJI CCNNGG 3 cut(s) 752, 753, 754
BsaXI ACNNNNNCTCC 2 cut(s) 715, 745
Bsc4I CCNNNNNNNGG 1 cut(s) 617
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 2 cut(s) 481, 970
Bse3DI GCAATG 2 cut(s) 225, 738
BseBI CCWGG 2 cut(s) 921, 1085
BseCI ATCGAT 1 cut(s) 571
BseDI CCNNGG 3 cut(s) 752, 753, 754
BseGI GGATG 2 cut(s) 470, 571
BseLI CCNNNNNNNGG 1 cut(s) 617
BseMI GCAATG 2 cut(s) 225, 738
BseMII CTCAG 2 cut(s) 68, 126
BseNI ACTGG 2 cut(s) 481, 970
BseRI GAGGAG 2 cut(s) 12, 374
BseXI GCAGC 2 cut(s) 576, 647
BshFI GGCC 1 cut(s) 653
BshVI ATCGAT 1 cut(s) 571
BsiHKCI CYCGRG 2 cut(s) 375, 753
BsiSI CCGG 2 cut(s) 89, 754
BsiWI CGTACG 1 cut(s) 612
BslFI GGGAC 2 cut(s) 50, 633
BslI CCNNNNNNNGG 1 cut(s) 617
BsmAI GTCTC 2 cut(s) 24, 244
BsmFI GGGAC 2 cut(s) 50, 633
BsnI GGCC 1 cut(s) 653
Bso31I GGTCTC 1 cut(s) 244
BsoBI CYCGRG 2 cut(s) 375, 753
Bsp143I GATC 3 cut(s) 568, 885, 1026
BspACI CCGC 3 cut(s) 92, 491, 654
BspANI GGCC 1 cut(s) 653
BspCNI CTCAG 2 cut(s) 69, 127
BspDI ATCGAT 1 cut(s) 571
BspLI GGNNCC 2 cut(s) 284, 652
BspTNI GGTCTC 1 cut(s) 244
BsrBI CCGCTC 1 cut(s) 656
BsrDI GCAATG 2 cut(s) 225, 738
BsrFI RCCGGY 1 cut(s) 88
BsrI ACTGG 2 cut(s) 481, 970
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 3 cut(s) 752, 753, 754
BssMI GATC 3 cut(s) 568, 885, 1026
BssSI CACGAG 1 cut(s) 1001
Bst2BI CACGAG 1 cut(s) 1001
Bst2UI CCWGG 2 cut(s) 921, 1085
Bst4CI ACNGT 3 cut(s) 18, 304, 612
BstBAI YACGTR 1 cut(s) 616
BstC8I GCNNGC 2 cut(s) 346, 350
BstDEI CTNAG 6 cut(s) 77, 135, 170, 551, 639, 766
BstF5I GGATG 2 cut(s) 470, 571
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 3 cut(s) 571, 888, 1029
BstMAI GTCTC 2 cut(s) 24, 244
BstMBI GATC 3 cut(s) 568, 885, 1026
BstMWI GCNNNNNNNGC 3 cut(s) 110, 205, 595
BstNI CCWGG 2 cut(s) 921, 1085
BstNSI RCATGY 1 cut(s) 498
BstSCI CCNGG 4 cut(s) 752, 753, 919, 1083
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 576, 647
BstV2I GAAGAC 1 cut(s) 864
BstXI CCANNNNNNTGG 1 cut(s) 1051
Bsu15I ATCGAT 1 cut(s) 571
BsuRI GGCC 1 cut(s) 653
BsuTUI ATCGAT 1 cut(s) 571
BtsCI GGATG 2 cut(s) 470, 571
BtsIMutI CAGTG 2 cut(s) 132, 474
Cac8I GCNNGC 2 cut(s) 346, 350
CfoI GCGC 1 cut(s) 115
Cfr10I RCCGGY 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 651
Cfr9I CCCGGG 1 cut(s) 753
ClaI ATCGAT 1 cut(s) 571
CseI GACGC 1 cut(s) 1045
Csp6I GTAC 3 cut(s) 107, 413, 613
CviAII CATG 1 cut(s) 495
CviQI GTAC 3 cut(s) 107, 413, 613
DdeI CTNAG 6 cut(s) 77, 135, 170, 551, 639, 766
DpnI GATC 3 cut(s) 570, 887, 1028
DpnII GATC 3 cut(s) 568, 885, 1026
DraI TTTAAA 1 cut(s) 927
Eco31I GGTCTC 1 cut(s) 244
Eco32I GATATC 1 cut(s) 127
Eco47III AGCGCT 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 605
Eco88I CYCGRG 2 cut(s) 375, 753
EcoRI GAATTC 1 cut(s) 1067
EcoRII CCWGG 2 cut(s) 919, 1083
EcoRV GATATC 1 cut(s) 127
FaeI CATG 1 cut(s) 498
FaqI GGGAC 2 cut(s) 50, 633
FatI CATG 1 cut(s) 494
FauNDI CATATG 1 cut(s) 237
FbaI TGATCA 1 cut(s) 1026
Fnu4HI GCNGC 4 cut(s) 492, 590, 636, 654
FokI GGATG 2 cut(s) 457, 578
Fsp4HI GCNGC 4 cut(s) 492, 590, 636, 654
FspBI CTAG 4 cut(s) 212, 444, 698, 1117
GlaI GCGC 1 cut(s) 114
GluI GCNGC 4 cut(s) 492, 590, 636, 654
GsuI CTGGAG 2 cut(s) 377, 953
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 1 cut(s) 653
HapII CCGG 2 cut(s) 89, 754
HgaI GACGC 1 cut(s) 1045
HhaI GCGC 1 cut(s) 115
Hin1II CATG 1 cut(s) 498
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HinfI GANTC 6 cut(s) 161, 364, 387, 521, 580, 833
HpaII CCGG 2 cut(s) 89, 754
HphI GGTGA 4 cut(s) 491, 530, 727, 1036
Hpy166II GTNNAC 1 cut(s) 728
Hpy188I TCNGA 8 cut(s) 78, 100, 337, 386, 392, 560, 585, 1073
Hpy188III TCNNGA 5 cut(s) 212, 356, 375, 713, 907
Hpy8I GTNNAC 1 cut(s) 728
Hpy99I CGWCG 1 cut(s) 1039
HpyAV CCTTC 3 cut(s) 641, 904, 1015
HpyCH4III ACNGT 3 cut(s) 18, 304, 612
HpyCH4IV ACGT 3 cut(s) 615, 730, 843
HpyCH4V TGCA 7 cut(s) 104, 189, 230, 259, 401, 431, 976
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 205, 595
HpyF3I CTNAG 6 cut(s) 77, 135, 170, 551, 639, 766
HpySE526I ACGT 3 cut(s) 615, 730, 843
Hsp92II CATG 1 cut(s) 498
HspAI GCGC 1 cut(s) 113
Ksp22I TGATCA 1 cut(s) 1026
Kzo9I GATC 3 cut(s) 568, 885, 1026
LmnI GCTCC 1 cut(s) 758
Lsp1109I GCAGC 2 cut(s) 576, 647
LweI GCATC 3 cut(s) 91, 415, 418
MaeI CTAG 4 cut(s) 212, 444, 698, 1117
MaeII ACGT 3 cut(s) 615, 730, 843
MaeIII GTNAC 4 cut(s) 56, 518, 781, 1087
MalI GATC 3 cut(s) 570, 887, 1028
MbiI CCGCTC 1 cut(s) 656
MboI GATC 3 cut(s) 568, 885, 1026
MboII GAAGA 4 cut(s) 656, 869, 895, 1117
MluCI AATT 7 cut(s) 220, 292, 669, 786, 799, 902, 1067
MlyI GAGTC 3 cut(s) 373, 515, 574
MmeI TCCRAC 1 cut(s) 834
MnlI CCTC 9 cut(s) 33, 264, 352, 508, 570, 823, 873, 954, 977
MseI TTAA 2 cut(s) 840, 926
MspI CCGG 2 cut(s) 89, 754
MspR9I CCNGG 4 cut(s) 754, 755, 921, 1085
MvaI CCWGG 2 cut(s) 921, 1085
MwoI GCNNNNNNNGC 3 cut(s) 110, 205, 595
NciI CCSGG 2 cut(s) 754, 755
NdeI CATATG 1 cut(s) 237
NdeII GATC 3 cut(s) 568, 885, 1026
NlaIII CATG 1 cut(s) 498
NlaIV GGNNCC 2 cut(s) 284, 652
NmuCI GTSAC 2 cut(s) 56, 518
NspI RCATGY 1 cut(s) 498
PaeR7I CTCGAG 1 cut(s) 375
PcsI WCGNNNNNNNCGW 1 cut(s) 382
PfeI GAWTC 3 cut(s) 161, 387, 833
Pfl23II CGTACG 1 cut(s) 612
PkrI GCNGC 4 cut(s) 493, 591, 637, 655
PleI GAGTC 3 cut(s) 372, 515, 574
PpsI GAGTC 3 cut(s) 372, 515, 574
Ppu21I YACGTR 1 cut(s) 616
Psp1406I AACGTT 1 cut(s) 730
Psp6I CCWGG 2 cut(s) 919, 1083
PspGI CCWGG 2 cut(s) 919, 1083
PspLI CGTACG 1 cut(s) 612
PspN4I GGNNCC 2 cut(s) 284, 652
PspPI GGNCC 1 cut(s) 651
RsaI GTAC 3 cut(s) 108, 414, 614
RsaNI GTAC 3 cut(s) 107, 413, 613
SaqAI TTAA 2 cut(s) 840, 926
SatI GCNGC 4 cut(s) 492, 590, 636, 654
Sau3AI GATC 3 cut(s) 568, 885, 1026
Sau96I GGNCC 1 cut(s) 651
ScaI AGTACT 1 cut(s) 414
SchI GAGTC 3 cut(s) 373, 515, 574
ScrFI CCNGG 4 cut(s) 754, 755, 921, 1085
SfaNI GCATC 3 cut(s) 91, 415, 418
SfcI CTRYAG 1 cut(s) 156
Sfr274I CTCGAG 1 cut(s) 375
SlaI CTCGAG 1 cut(s) 375
SmaI CCCGGG 1 cut(s) 755
SmlI CTYRAG 3 cut(s) 375, 945, 1094
SmoI CTYRAG 3 cut(s) 375, 945, 1094
Sse9I AATT 7 cut(s) 220, 292, 669, 786, 799, 902, 1067
SsiI CCGC 3 cut(s) 92, 491, 654
SspMI CTAG 4 cut(s) 212, 444, 698, 1117
StyD4I CCNGG 4 cut(s) 752, 753, 919, 1083
TaaI ACNGT 3 cut(s) 18, 304, 612
TaiI ACGT 3 cut(s) 618, 733, 846
TaqI TCGA 2 cut(s) 376, 571
TasI AATT 7 cut(s) 220, 292, 669, 786, 799, 902, 1067
TatI WGTACW 1 cut(s) 412
TauI GCSGC 2 cut(s) 494, 656
TfiI GAWTC 3 cut(s) 161, 387, 833
Tru1I TTAA 2 cut(s) 840, 926
Tru9I TTAA 2 cut(s) 840, 926
TscAI CASTG 2 cut(s) 139, 481
TseFI GTSAC 2 cut(s) 56, 518
TseI GCWGC 2 cut(s) 589, 635
Tsp45I GTSAC 2 cut(s) 56, 518
TspDTI ATGAA 6 cut(s) 214, 330, 459, 491, 1080, 1118
TspMI CCCGGG 1 cut(s) 753
TspRI CASTG 2 cut(s) 139, 481
XapI RAATTY 2 cut(s) 902, 1067
XbaI TCTAGA 1 cut(s) 211
XceI RCATGY 1 cut(s) 498
XcmI CCANNNNNNNNNTGG 1 cut(s) 977
XhoI CTCGAG 1 cut(s) 375
XmaI CCCGGG 1 cut(s) 753
XspI CTAG 4 cut(s) 212, 444, 698, 1117
ZrmI AGTACT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.