Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 656 |
| AciI | CCGC | 3 cut(s) | 92, 491, 654 |
| AclI | AACGTT | 1 cut(s) | 730 |
| AcsI | RAATTY | 2 cut(s) | 902, 1067 |
| AcuI | CTGAAG | 1 cut(s) | 605 |
| AfaI | GTAC | 3 cut(s) | 108, 414, 614 |
| AfeI | AGCGCT | 1 cut(s) | 114 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 617 |
| AjnI | CCWGG | 2 cut(s) | 919, 1083 |
| AluBI | AGCT | 6 cut(s) | 147, 589, 638, 697, 761, 812 |
| AluI | AGCT | 6 cut(s) | 147, 589, 638, 697, 761, 812 |
| Alw26I | GTCTC | 2 cut(s) | 24, 244 |
| Ama87I | CYCGRG | 2 cut(s) | 375, 753 |
| Aor51HI | AGCGCT | 1 cut(s) | 114 |
| AoxI | GGCC | 1 cut(s) | 651 |
| ApeKI | GCWGC | 2 cut(s) | 589, 635 |
| ApoI | RAATTY | 2 cut(s) | 902, 1067 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 512, 544 |
| AspLEI | GCGC | 1 cut(s) | 115 |
| AspS9I | GGNCC | 1 cut(s) | 651 |
| AsuC2I | CCSGG | 2 cut(s) | 754, 755 |
| AsuHPI | GGTGA | 4 cut(s) | 491, 530, 727, 1036 |
| AvaI | CYCGRG | 2 cut(s) | 375, 753 |
| BarI | GAAGNNNNNNTAC | 3 cut(s) | 99, 131, 1097 |
| BauI | CACGAG | 1 cut(s) | 1001 |
| BbsI | GAAGAC | 1 cut(s) | 864 |
| BbvI | GCAGC | 2 cut(s) | 576, 647 |
| BccI | CCATC | 3 cut(s) | 34, 567, 674 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 238, 272 |
| BciT130I | CCWGG | 2 cut(s) | 921, 1085 |
| BclI | TGATCA | 1 cut(s) | 1026 |
| BcnI | CCSGG | 2 cut(s) | 754, 755 |
| BcoDI | GTCTC | 2 cut(s) | 24, 244 |
| BfaI | CTAG | 4 cut(s) | 212, 444, 698, 1117 |
| BfmI | CTRYAG | 1 cut(s) | 156 |
| BfoI | RGCGCY | 1 cut(s) | 116 |
| BisI | GCNGC | 4 cut(s) | 492, 590, 636, 654 |
| BlsI | GCNGC | 4 cut(s) | 493, 591, 637, 655 |
| BmcAI | AGTACT | 1 cut(s) | 414 |
| Bme1390I | CCNGG | 4 cut(s) | 754, 755, 921, 1085 |
| BmeT110I | CYCGRG | 2 cut(s) | 375, 753 |
| BmgT120I | GGNCC | 1 cut(s) | 651 |
| BmiI | GGNNCC | 2 cut(s) | 284, 652 |
| BmrFI | CCNGG | 4 cut(s) | 754, 755, 921, 1085 |
| BmsI | GCATC | 3 cut(s) | 91, 415, 418 |
| BpiI | GAAGAC | 1 cut(s) | 864 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 506, 538 |
| BpmI | CTGGAG | 2 cut(s) | 377, 953 |
| Bpu10I | CCTNAGC | 2 cut(s) | 170, 639 |
| BpuEI | CTTGAG | 2 cut(s) | 930, 1079 |
| BpuMI | CCSGG | 2 cut(s) | 754, 755 |
| Bsa29I | ATCGAT | 1 cut(s) | 571 |
| BsaAI | YACGTR | 1 cut(s) | 616 |
| BsaI | GGTCTC | 1 cut(s) | 244 |
| BsaJI | CCNNGG | 3 cut(s) | 752, 753, 754 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 715, 745 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 617 |
| Bse118I | RCCGGY | 1 cut(s) | 88 |
| Bse1I | ACTGG | 2 cut(s) | 481, 970 |
| Bse3DI | GCAATG | 2 cut(s) | 225, 738 |
| BseBI | CCWGG | 2 cut(s) | 921, 1085 |
| BseCI | ATCGAT | 1 cut(s) | 571 |
| BseDI | CCNNGG | 3 cut(s) | 752, 753, 754 |
| BseGI | GGATG | 2 cut(s) | 470, 571 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 617 |
| BseMI | GCAATG | 2 cut(s) | 225, 738 |
| BseMII | CTCAG | 2 cut(s) | 68, 126 |
| BseNI | ACTGG | 2 cut(s) | 481, 970 |
| BseRI | GAGGAG | 2 cut(s) | 12, 374 |
| BseXI | GCAGC | 2 cut(s) | 576, 647 |
| BshFI | GGCC | 1 cut(s) | 653 |
| BshVI | ATCGAT | 1 cut(s) | 571 |
| BsiHKCI | CYCGRG | 2 cut(s) | 375, 753 |
| BsiSI | CCGG | 2 cut(s) | 89, 754 |
| BsiWI | CGTACG | 1 cut(s) | 612 |
| BslFI | GGGAC | 2 cut(s) | 50, 633 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 617 |
| BsmAI | GTCTC | 2 cut(s) | 24, 244 |
| BsmFI | GGGAC | 2 cut(s) | 50, 633 |
| BsnI | GGCC | 1 cut(s) | 653 |
| Bso31I | GGTCTC | 1 cut(s) | 244 |
| BsoBI | CYCGRG | 2 cut(s) | 375, 753 |
| Bsp143I | GATC | 3 cut(s) | 568, 885, 1026 |
| BspACI | CCGC | 3 cut(s) | 92, 491, 654 |
| BspANI | GGCC | 1 cut(s) | 653 |
| BspCNI | CTCAG | 2 cut(s) | 69, 127 |
| BspDI | ATCGAT | 1 cut(s) | 571 |
| BspLI | GGNNCC | 2 cut(s) | 284, 652 |
| BspTNI | GGTCTC | 1 cut(s) | 244 |
| BsrBI | CCGCTC | 1 cut(s) | 656 |
| BsrDI | GCAATG | 2 cut(s) | 225, 738 |
| BsrFI | RCCGGY | 1 cut(s) | 88 |
| BsrI | ACTGG | 2 cut(s) | 481, 970 |
| BssAI | RCCGGY | 1 cut(s) | 88 |
| BssECI | CCNNGG | 3 cut(s) | 752, 753, 754 |
| BssMI | GATC | 3 cut(s) | 568, 885, 1026 |
| BssSI | CACGAG | 1 cut(s) | 1001 |
| Bst2BI | CACGAG | 1 cut(s) | 1001 |
| Bst2UI | CCWGG | 2 cut(s) | 921, 1085 |
| Bst4CI | ACNGT | 3 cut(s) | 18, 304, 612 |
| BstBAI | YACGTR | 1 cut(s) | 616 |
| BstC8I | GCNNGC | 2 cut(s) | 346, 350 |
| BstDEI | CTNAG | 6 cut(s) | 77, 135, 170, 551, 639, 766 |
| BstF5I | GGATG | 2 cut(s) | 470, 571 |
| BstH2I | RGCGCY | 1 cut(s) | 116 |
| BstHHI | GCGC | 1 cut(s) | 115 |
| BstKTI | GATC | 3 cut(s) | 571, 888, 1029 |
| BstMAI | GTCTC | 2 cut(s) | 24, 244 |
| BstMBI | GATC | 3 cut(s) | 568, 885, 1026 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 110, 205, 595 |
| BstNI | CCWGG | 2 cut(s) | 921, 1085 |
| BstNSI | RCATGY | 1 cut(s) | 498 |
| BstSCI | CCNGG | 4 cut(s) | 752, 753, 919, 1083 |
| BstSFI | CTRYAG | 1 cut(s) | 156 |
| BstV1I | GCAGC | 2 cut(s) | 576, 647 |
| BstV2I | GAAGAC | 1 cut(s) | 864 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1051 |
| Bsu15I | ATCGAT | 1 cut(s) | 571 |
| BsuRI | GGCC | 1 cut(s) | 653 |
| BsuTUI | ATCGAT | 1 cut(s) | 571 |
| BtsCI | GGATG | 2 cut(s) | 470, 571 |
| BtsIMutI | CAGTG | 2 cut(s) | 132, 474 |
| Cac8I | GCNNGC | 2 cut(s) | 346, 350 |
| CfoI | GCGC | 1 cut(s) | 115 |
| Cfr10I | RCCGGY | 1 cut(s) | 88 |
| Cfr13I | GGNCC | 1 cut(s) | 651 |
| Cfr9I | CCCGGG | 1 cut(s) | 753 |
| ClaI | ATCGAT | 1 cut(s) | 571 |
| CseI | GACGC | 1 cut(s) | 1045 |
| Csp6I | GTAC | 3 cut(s) | 107, 413, 613 |
| CviAII | CATG | 1 cut(s) | 495 |
| CviQI | GTAC | 3 cut(s) | 107, 413, 613 |
| DdeI | CTNAG | 6 cut(s) | 77, 135, 170, 551, 639, 766 |
| DpnI | GATC | 3 cut(s) | 570, 887, 1028 |
| DpnII | GATC | 3 cut(s) | 568, 885, 1026 |
| DraI | TTTAAA | 1 cut(s) | 927 |
| Eco31I | GGTCTC | 1 cut(s) | 244 |
| Eco32I | GATATC | 1 cut(s) | 127 |
| Eco47III | AGCGCT | 1 cut(s) | 114 |
| Eco57I | CTGAAG | 1 cut(s) | 605 |
| Eco88I | CYCGRG | 2 cut(s) | 375, 753 |
| EcoRI | GAATTC | 1 cut(s) | 1067 |
| EcoRII | CCWGG | 2 cut(s) | 919, 1083 |
| EcoRV | GATATC | 1 cut(s) | 127 |
| FaeI | CATG | 1 cut(s) | 498 |
| FaqI | GGGAC | 2 cut(s) | 50, 633 |
| FatI | CATG | 1 cut(s) | 494 |
| FauNDI | CATATG | 1 cut(s) | 237 |
| FbaI | TGATCA | 1 cut(s) | 1026 |
| Fnu4HI | GCNGC | 4 cut(s) | 492, 590, 636, 654 |
| FokI | GGATG | 2 cut(s) | 457, 578 |
| Fsp4HI | GCNGC | 4 cut(s) | 492, 590, 636, 654 |
| FspBI | CTAG | 4 cut(s) | 212, 444, 698, 1117 |
| GlaI | GCGC | 1 cut(s) | 114 |
| GluI | GCNGC | 4 cut(s) | 492, 590, 636, 654 |
| GsuI | CTGGAG | 2 cut(s) | 377, 953 |
| HaeII | RGCGCY | 1 cut(s) | 116 |
| HaeIII | GGCC | 1 cut(s) | 653 |
| HapII | CCGG | 2 cut(s) | 89, 754 |
| HgaI | GACGC | 1 cut(s) | 1045 |
| HhaI | GCGC | 1 cut(s) | 115 |
| Hin1II | CATG | 1 cut(s) | 498 |
| Hin6I | GCGC | 1 cut(s) | 113 |
| HinP1I | GCGC | 1 cut(s) | 113 |
| HinfI | GANTC | 6 cut(s) | 161, 364, 387, 521, 580, 833 |
| HpaII | CCGG | 2 cut(s) | 89, 754 |
| HphI | GGTGA | 4 cut(s) | 491, 530, 727, 1036 |
| Hpy166II | GTNNAC | 1 cut(s) | 728 |
| Hpy188I | TCNGA | 8 cut(s) | 78, 100, 337, 386, 392, 560, 585, 1073 |
| Hpy188III | TCNNGA | 5 cut(s) | 212, 356, 375, 713, 907 |
| Hpy8I | GTNNAC | 1 cut(s) | 728 |
| Hpy99I | CGWCG | 1 cut(s) | 1039 |
| HpyAV | CCTTC | 3 cut(s) | 641, 904, 1015 |
| HpyCH4III | ACNGT | 3 cut(s) | 18, 304, 612 |
| HpyCH4IV | ACGT | 3 cut(s) | 615, 730, 843 |
| HpyCH4V | TGCA | 7 cut(s) | 104, 189, 230, 259, 401, 431, 976 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 110, 205, 595 |
| HpyF3I | CTNAG | 6 cut(s) | 77, 135, 170, 551, 639, 766 |
| HpySE526I | ACGT | 3 cut(s) | 615, 730, 843 |
| Hsp92II | CATG | 1 cut(s) | 498 |
| HspAI | GCGC | 1 cut(s) | 113 |
| Ksp22I | TGATCA | 1 cut(s) | 1026 |
| Kzo9I | GATC | 3 cut(s) | 568, 885, 1026 |
| LmnI | GCTCC | 1 cut(s) | 758 |
| Lsp1109I | GCAGC | 2 cut(s) | 576, 647 |
| LweI | GCATC | 3 cut(s) | 91, 415, 418 |
| MaeI | CTAG | 4 cut(s) | 212, 444, 698, 1117 |
| MaeII | ACGT | 3 cut(s) | 615, 730, 843 |
| MaeIII | GTNAC | 4 cut(s) | 56, 518, 781, 1087 |
| MalI | GATC | 3 cut(s) | 570, 887, 1028 |
| MbiI | CCGCTC | 1 cut(s) | 656 |
| MboI | GATC | 3 cut(s) | 568, 885, 1026 |
| MboII | GAAGA | 4 cut(s) | 656, 869, 895, 1117 |
| MluCI | AATT | 7 cut(s) | 220, 292, 669, 786, 799, 902, 1067 |
| MlyI | GAGTC | 3 cut(s) | 373, 515, 574 |
| MmeI | TCCRAC | 1 cut(s) | 834 |
| MnlI | CCTC | 9 cut(s) | 33, 264, 352, 508, 570, 823, 873, 954, 977 |
| MseI | TTAA | 2 cut(s) | 840, 926 |
| MspI | CCGG | 2 cut(s) | 89, 754 |
| MspR9I | CCNGG | 4 cut(s) | 754, 755, 921, 1085 |
| MvaI | CCWGG | 2 cut(s) | 921, 1085 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 110, 205, 595 |
| NciI | CCSGG | 2 cut(s) | 754, 755 |
| NdeI | CATATG | 1 cut(s) | 237 |
| NdeII | GATC | 3 cut(s) | 568, 885, 1026 |
| NlaIII | CATG | 1 cut(s) | 498 |
| NlaIV | GGNNCC | 2 cut(s) | 284, 652 |
| NmuCI | GTSAC | 2 cut(s) | 56, 518 |
| NspI | RCATGY | 1 cut(s) | 498 |
| PaeR7I | CTCGAG | 1 cut(s) | 375 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 382 |
| PfeI | GAWTC | 3 cut(s) | 161, 387, 833 |
| Pfl23II | CGTACG | 1 cut(s) | 612 |
| PkrI | GCNGC | 4 cut(s) | 493, 591, 637, 655 |
| PleI | GAGTC | 3 cut(s) | 372, 515, 574 |
| PpsI | GAGTC | 3 cut(s) | 372, 515, 574 |
| Ppu21I | YACGTR | 1 cut(s) | 616 |
| Psp1406I | AACGTT | 1 cut(s) | 730 |
| Psp6I | CCWGG | 2 cut(s) | 919, 1083 |
| PspGI | CCWGG | 2 cut(s) | 919, 1083 |
| PspLI | CGTACG | 1 cut(s) | 612 |
| PspN4I | GGNNCC | 2 cut(s) | 284, 652 |
| PspPI | GGNCC | 1 cut(s) | 651 |
| RsaI | GTAC | 3 cut(s) | 108, 414, 614 |
| RsaNI | GTAC | 3 cut(s) | 107, 413, 613 |
| SaqAI | TTAA | 2 cut(s) | 840, 926 |
| SatI | GCNGC | 4 cut(s) | 492, 590, 636, 654 |
| Sau3AI | GATC | 3 cut(s) | 568, 885, 1026 |
| Sau96I | GGNCC | 1 cut(s) | 651 |
| ScaI | AGTACT | 1 cut(s) | 414 |
| SchI | GAGTC | 3 cut(s) | 373, 515, 574 |
| ScrFI | CCNGG | 4 cut(s) | 754, 755, 921, 1085 |
| SfaNI | GCATC | 3 cut(s) | 91, 415, 418 |
| SfcI | CTRYAG | 1 cut(s) | 156 |
| Sfr274I | CTCGAG | 1 cut(s) | 375 |
| SlaI | CTCGAG | 1 cut(s) | 375 |
| SmaI | CCCGGG | 1 cut(s) | 755 |
| SmlI | CTYRAG | 3 cut(s) | 375, 945, 1094 |
| SmoI | CTYRAG | 3 cut(s) | 375, 945, 1094 |
| Sse9I | AATT | 7 cut(s) | 220, 292, 669, 786, 799, 902, 1067 |
| SsiI | CCGC | 3 cut(s) | 92, 491, 654 |
| SspMI | CTAG | 4 cut(s) | 212, 444, 698, 1117 |
| StyD4I | CCNGG | 4 cut(s) | 752, 753, 919, 1083 |
| TaaI | ACNGT | 3 cut(s) | 18, 304, 612 |
| TaiI | ACGT | 3 cut(s) | 618, 733, 846 |
| TaqI | TCGA | 2 cut(s) | 376, 571 |
| TasI | AATT | 7 cut(s) | 220, 292, 669, 786, 799, 902, 1067 |
| TatI | WGTACW | 1 cut(s) | 412 |
| TauI | GCSGC | 2 cut(s) | 494, 656 |
| TfiI | GAWTC | 3 cut(s) | 161, 387, 833 |
| Tru1I | TTAA | 2 cut(s) | 840, 926 |
| Tru9I | TTAA | 2 cut(s) | 840, 926 |
| TscAI | CASTG | 2 cut(s) | 139, 481 |
| TseFI | GTSAC | 2 cut(s) | 56, 518 |
| TseI | GCWGC | 2 cut(s) | 589, 635 |
| Tsp45I | GTSAC | 2 cut(s) | 56, 518 |
| TspDTI | ATGAA | 6 cut(s) | 214, 330, 459, 491, 1080, 1118 |
| TspMI | CCCGGG | 1 cut(s) | 753 |
| TspRI | CASTG | 2 cut(s) | 139, 481 |
| XapI | RAATTY | 2 cut(s) | 902, 1067 |
| XbaI | TCTAGA | 1 cut(s) | 211 |
| XceI | RCATGY | 1 cut(s) | 498 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 977 |
| XhoI | CTCGAG | 1 cut(s) | 375 |
| XmaI | CCCGGG | 1 cut(s) | 753 |
| XspI | CTAG | 4 cut(s) | 212, 444, 698, 1117 |
| ZrmI | AGTACT | 1 cut(s) | 414 |