Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Forward (+)

30544838 .. 30548156

Gene Structure 3319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0305100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2028 bp

ATGCCCTCACTGACGAGGTCTCAATTTTCCGATTCCGGTGCCGTAATGGACTTAGACGTCGACATTTCGCGGTGGGTCCTGGAGTTTCTCCTCCGTGACCGCCACAACGAGACCATCGCCAAGCGACTCCTTGCCGTCGCGCCGCTCCCGAACCGCCACGACTGGCGGTTGAAGAAGACGGTCCTCCTCCGAACAATCGAGTCCGCAATCTATGACGACGCTTCAGTCACCGAAGCGATCCTCGAAGCCCTGGAGTCCATCGAGGCTTTGGACCGCGGCCAAGGGTTTCAGACCACGGAGGCCATGAGGGCGGCGTACTGCGCCGTCGCGACGGAGTGCACGGTCAAGTTCTTGGTTTGCTTCGGACGGAAGTACATTGAGGCTGTGGACCGGATTTGGAGAGGTAGGGTTAGGGTTTTGGAGGAGAGTGAGGGGAGCGAGCTGGTTTCGGCGGAGTTGAAAGAGAGAAGATATGAGGTGGAGGCTGCGATTTGGGATAGGAATGTGTCGAAAAAGCTAGCGAGGATGAATACTAGAAATGATGCGTTGAGATTGGTTGGGGAGTATGTGGAGGAAGCTTGGGCAGTGATTGGTCCTCCTTTTCTTAATTGGGCCGTTAGATTTCATATGGTTAAGGAAAGTTTAGGTGAGGGTGATGGTAATGTAGATGATGGGTGTGGAAAGGAGGTTGGAATGGTGAATGGGAATGAACTGGAGGTGCAGGTAGCAAATGGGGCTGATTTGGGTGATGGTTCCAAATTGGAGGTCAATGAGGCTAATGAGGGTGATGGGTCTAAACCGGAGGTGCAAATAGAGAGTGATACTAAGGTTGGTCATGGGTCTGAATTGGTAATTTGGACTGGGGTGGAGGTGCCATTGACAAAAGGGGCTGATTTGGGTGTTGGGAAAGAGTTGAATGGGCAAAGGGAAAATGGGGCTAATGTTAGTGATGGGTCTGGAGTAAAGGCGCGAAGGGTGAATGGTGCTAATGTTGGTGGTGATAGGTCTAAATGGGAGGCGCGGCGAGTGGAAAATGATACTAATGTGGGTGATGTGACTGTGGCTTTTTCCAAGTTTGGGTCTCTGTTGGGTTACCATTCTATGGACGGTGTTTTGCGGGTAGTGGGGGAAGGGAGGTCACCGCTTAATGTGAACTGTGGTGTCCTCAGTTTTGAACCTGCAAGAAAAGAGAAAGAAATTCCGAGGAACAGGGCACTTAGGCACAACCATGGACCACTTAAGATTAGAGATGCTGAATATGTCGGCACGGATGCATCAGATGGCATACATAATTACGTATCCAGCACTGAAGTTAGAAAAGTGCAAGAACAACTTAAGTCCGGTGTTATGGCTGTACAATCTGTAGTGACAGACCCACTACCTTATAATTTGCGCATGCCGGAAATTGTAAGATCTGAGGTGGAAGTCAATCATGTAAATGGAGAAGATGGTACAGAAAATCCATCTGTTGAAAAGACCACTGGGCCTGATCATTCTAATAGTGATACTAATGGAAATCCGACCTCCAGTGATCAGAACGATGTGCCCCAAGCTCCTGGAAAAGAAAATGATGCATCCAACCTGTCCGTTGAGAAGGGAAAGGGCACACAGTATGTTCGAAGTGGTGATGCCAACCGTGCAGATCTGTGTTGCAGTAATCAGAATAGTGGTCCTCGACCTGGGTTGATGGAACGTAATAGTACTGCCCATACTTACAAGTGGGATGACTGGCTAGGTATGTCACCTGAGGGAACAAGTAATGGTAAGGGCACGCTTCATTTACCTACATTTAAACGGAATGCTATTTCTCCACTGAAAAAGTATGAGGATAAAAGATTTGCTAAGAGAAGAAAAGTAAAGAGATGGAGCGTACATGAAGAAGACACATTAAGGGCTGGTGTGCAAGAGTATGGTAAAGGAAATTGGAAGCTTATCTTAGATGCATACCGAGATGTATTTGAAGAAAGAACTGAGGTTGATTTAAAGGACAAGTGGAGAAACATGTCGAAGTGGAGGCACTGTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

675

Amino Acids

74.93

Weight (kDa)

5.67

Isoelectric Point (pI)

35.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	620 - 668	1.6e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1386
AasI	GACNNNNNNGTC	2 cut(s)	56, 224
AatII	GACGTC	1 cut(s)	60
Acc16I	TGCGCA	1 cut(s)	1394
Acc36I	ACCTGC	2 cut(s)	712, 1186
AccB1I	GGYRCC	2 cut(s)	38, 871
AccB7I	CCANNNNNTGG	1 cut(s)	1102
AccBSI	CCGCTC	1 cut(s)	145
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	6 cut(s)	70, 140, 276, 329, 970, 1021
AclWI	GGATC	1 cut(s)	232
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	1197
AcuI	CTGAAG	2 cut(s)	207, 1329
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	6 cut(s)	317, 374, 1356, 1453, 1702, 1872
AfiI	CCNNNNNNNGG	3 cut(s)	1077, 1102, 1679
AflII	CTTAAG	2 cut(s)	1238, 1334
AflIII	ACRYGT	1 cut(s)	2001
AgsI	TTSAA	6 cut(s)	172, 460, 916, 1175, 1472, 1961
AjnI	CCWGG	4 cut(s)	78, 249, 1555, 1678
AluBI	AGCT	5 cut(s)	442, 517, 578, 1553, 1930
AluI	AGCT	5 cut(s)	442, 517, 578, 1553, 1930
Alw21I	GWGCWC	1 cut(s)	341
Alw26I	GTCTC	3 cut(s)	24, 104, 1086
Alw44I	GTGCAC	1 cut(s)	337
AlwI	GGATC	1 cut(s)	232
AoxI	GGCC	4 cut(s)	277, 300, 612, 1484
ApaLI	GTGCAC	1 cut(s)	337
ApeKI	GCWGC	1 cut(s)	485
ApoI	RAATTY	1 cut(s)	1197
ArsI	GACNNNNNNTTYG	2 cut(s)	750, 782
AspLEI	GCGC	5 cut(s)	142, 323, 970, 1021, 1395
AspS9I	GGNCC	9 cut(s)	76, 181, 271, 388, 593, 612, 1232, 1484, 1670
AsuII	TTCGAA	1 cut(s)	1618
AsuNHI	GCTAGC	1 cut(s)	517
AvaII	GGWCC	7 cut(s)	76, 181, 271, 388, 593, 1232, 1670
AxyI	CCTNAGG	1 cut(s)	1746
BaeGI	GKGCMC	5 cut(s)	341, 1216, 1548, 1607, 1772
BaeI	ACNNNNGTAYC	4 cut(s)	813, 846, 1029, 1062
BanI	GGYRCC	2 cut(s)	38, 871
BbsI	GAAGAC	2 cut(s)	182, 1887
Bbv12I	GWGCWC	1 cut(s)	341
BbvI	GCAGC	1 cut(s)	472
BceAI	ACGGC	4 cut(s)	26, 119, 308, 599
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	4 cut(s)	80, 251, 1557, 1680
BciVI	GTATCC	1 cut(s)	1309
BclI	TGATCA	2 cut(s)	1489, 1531
BcoDI	GTCTC	3 cut(s)	24, 104, 1086
BfaI	CTAG	4 cut(s)	518, 534, 1733, 2026
BfmI	CTRYAG	1 cut(s)	1362
BfrI	CTTAAG	2 cut(s)	1238, 1334
BfuAI	ACCTGC	2 cut(s)	712, 1186
BfuI	GTATCC	1 cut(s)	1309
BglI	GCCNNNNNGGC	1 cut(s)	308
BglII	AGATCT	2 cut(s)	1412, 1642
BisI	GCNGC	5 cut(s)	143, 277, 312, 486, 1022
BlsI	GCNGC	5 cut(s)	144, 278, 313, 487, 1023
BmcAI	AGTACT	1 cut(s)	1702
Bme1390I	CCNGG	4 cut(s)	80, 251, 1557, 1680
Bme18I	GGWCC	7 cut(s)	76, 181, 271, 388, 593, 1232, 1670
BmgT120I	GGNCC	9 cut(s)	76, 181, 271, 388, 593, 612, 1232, 1484, 1670
BmiI	GGNNCC	4 cut(s)	40, 77, 754, 873
BmrFI	CCNGG	4 cut(s)	80, 251, 1557, 1680
BmrI	ACTGGG	2 cut(s)	870, 1491
BmsI	GCATC	8 cut(s)	532, 1240, 1261, 1283, 1561, 1583, 1618, 1930
BmtI	GCTAGC	1 cut(s)	521
BmuI	ACTGGG	2 cut(s)	870, 1491
BpiI	GAAGAC	2 cut(s)	182, 1887
BpmI	CTGGAG	5 cut(s)	101, 272, 734, 978, 1510
Bpu14I	TTCGAA	1 cut(s)	1618
BsaAI	YACGTR	1 cut(s)	1297
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	3 cut(s)	24, 104, 1086
BsaJI	CCNNGG	7 cut(s)	249, 274, 280, 294, 1202, 1228, 1679
BsaWI	WCCGGW	4 cut(s)	35, 390, 799, 1340
BsaXI	ACNNNNNCTCC	1 cut(s)	2005
Bsc4I	CCNNNNNNNGG	3 cut(s)	1077, 1102, 1679
Bse1I	ACTGG	6 cut(s)	167, 717, 865, 1486, 1527, 1733
Bse21I	CCTNAGG	1 cut(s)	1746
BseBI	CCWGG	4 cut(s)	80, 251, 1557, 1680
BseDI	CCNNGG	7 cut(s)	249, 274, 280, 294, 1202, 1228, 1679
BseGI	GGATG	4 cut(s)	531, 1276, 1574, 1729
BseLI	CCNNNNNNNGG	3 cut(s)	1077, 1102, 1679
BseMII	CTCAG	4 cut(s)	1180, 1407, 1737, 1962
BseNI	ACTGG	6 cut(s)	167, 717, 865, 1486, 1527, 1733
BseRI	GAGGAG	3 cut(s)	80, 176, 437
BseSI	GKGCMC	5 cut(s)	341, 1216, 1548, 1607, 1772
BseXI	GCAGC	1 cut(s)	472
BsgI	GTGCAG	2 cut(s)	740, 1659
Bsh1236I	CGCG	6 cut(s)	70, 140, 276, 329, 970, 1021
BshFI	GGCC	4 cut(s)	279, 302, 614, 1486
BshNI	GGYRCC	2 cut(s)	38, 871
BsiHKAI	GWGCWC	1 cut(s)	341
BsiSI	CCGG	5 cut(s)	36, 391, 800, 1341, 1400
BslI	CCNNNNNNNGG	3 cut(s)	1077, 1102, 1679
BsmAI	GTCTC	3 cut(s)	24, 104, 1086
BsmI	GAATGC	1 cut(s)	1804
BsnI	GGCC	4 cut(s)	279, 302, 614, 1486
Bso31I	GGTCTC	3 cut(s)	24, 104, 1086
Bsp119I	TTCGAA	1 cut(s)	1618
Bsp1286I	GDGCHC	5 cut(s)	341, 1216, 1548, 1607, 1772
Bsp1407I	TGTACA	1 cut(s)	1354
Bsp143I	GATC	5 cut(s)	237, 1412, 1489, 1531, 1642
Bsp19I	CCATGG	1 cut(s)	1228
Bsp68I	TCGCGA	1 cut(s)	329
BspANI	GGCC	4 cut(s)	279, 302, 614, 1486
BspCNI	CTCAG	4 cut(s)	1179, 1408, 1738, 1963
BspFNI	CGCG	6 cut(s)	70, 140, 276, 329, 970, 1021
BspLI	GGNNCC	4 cut(s)	40, 77, 754, 873
BspMI	ACCTGC	2 cut(s)	712, 1186
BspOI	GCTAGC	1 cut(s)	521
BspPI	GGATC	1 cut(s)	232
BspT104I	TTCGAA	1 cut(s)	1618
BspT107I	GGYRCC	2 cut(s)	38, 871
BspTI	CTTAAG	2 cut(s)	1238, 1334
BspTNI	GGTCTC	3 cut(s)	24, 104, 1086
BsrBI	CCGCTC	1 cut(s)	145
BsrGI	TGTACA	1 cut(s)	1354
BsrI	ACTGG	6 cut(s)	167, 717, 865, 1486, 1527, 1733
BssECI	CCNNGG	7 cut(s)	249, 274, 280, 294, 1202, 1228, 1679
BssMI	GATC	5 cut(s)	237, 1412, 1489, 1531, 1642
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	2 cut(s)	280, 1228
Bst2UI	CCWGG	4 cut(s)	80, 251, 1557, 1680
Bst4CI	ACNGT	8 cut(s)	181, 343, 1060, 1109, 1157, 1611, 1637, 2021
BstACI	GRCGYC	1 cut(s)	57
BstAFI	CTTAAG	2 cut(s)	1238, 1334
BstAUI	TGTACA	1 cut(s)	1354
BstBAI	YACGTR	1 cut(s)	1297
BstBI	TTCGAA	1 cut(s)	1618
BstC8I	GCNNGC	4 cut(s)	440, 519, 1397, 1772
BstDEI	CTNAG	9 cut(s)	52, 825, 1166, 1217, 1416, 1746, 1842, 1936, 1971
BstDSI	CCRYGG	3 cut(s)	274, 294, 1228
BstEII	GGTNACC	2 cut(s)	1091, 1137
BstF5I	GGATG	4 cut(s)	531, 1276, 1574, 1729
BstFNI	CGCG	6 cut(s)	70, 140, 276, 329, 970, 1021
BstHHI	GCGC	5 cut(s)	142, 323, 970, 1021, 1395
BstKTI	GATC	5 cut(s)	240, 1415, 1492, 1534, 1645
BstMAI	GTCTC	3 cut(s)	24, 104, 1086
BstMBI	GATC	5 cut(s)	237, 1412, 1489, 1531, 1642
BstMWI	GCNNNNNNNGC	4 cut(s)	308, 320, 734, 1637
BstNI	CCWGG	4 cut(s)	80, 251, 1557, 1680
BstNSI	RCATGY	2 cut(s)	1399, 2005
BstPI	GGTNACC	2 cut(s)	1091, 1137
BstSCI	CCNGG	4 cut(s)	78, 249, 1555, 1678
BstSFI	CTRYAG	1 cut(s)	1362
BstSLI	GKGCMC	5 cut(s)	341, 1216, 1548, 1607, 1772
BstSNI	TACGTA	1 cut(s)	1297
BstUI	CGCG	6 cut(s)	70, 140, 276, 329, 970, 1021
BstV1I	GCAGC	1 cut(s)	472
BstV2I	GAAGAC	2 cut(s)	182, 1887
BstX2I	RGATCY	2 cut(s)	1412, 1642
BstXI	CCANNNNNNTGG	1 cut(s)	1556
BstYI	RGATCY	2 cut(s)	1412, 1642
Bsu36I	CCTNAGG	1 cut(s)	1746
BsuI	GTATCC	1 cut(s)	1309
BsuRI	GGCC	4 cut(s)	279, 302, 614, 1486
BtgI	CCRYGG	3 cut(s)	274, 294, 1228
BtgZI	GCGATG	1 cut(s)	100
BtsCI	GGATG	4 cut(s)	531, 1276, 1574, 1729
BtsI	GCAGTG	1 cut(s)	591
BtsIMutI	CAGTG	7 cut(s)	8, 591, 1305, 1479, 1534, 1811, 2017
BtuMI	TCGCGA	1 cut(s)	329
BveI	ACCTGC	2 cut(s)	712, 1186
Cac8I	GCNNGC	4 cut(s)	440, 519, 1397, 1772
CfoI	GCGC	5 cut(s)	142, 323, 970, 1021, 1395
Cfr13I	GGNCC	9 cut(s)	76, 181, 271, 388, 593, 612, 1232, 1484, 1670
Cfr42I	CCGCGG	1 cut(s)	277
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	6 cut(s)	316, 373, 1355, 1452, 1701, 1871
CviAII	CATG	7 cut(s)	304, 836, 1229, 1396, 1433, 1874, 2002
CviQI	GTAC	6 cut(s)	316, 373, 1355, 1452, 1701, 1871
DdeI	CTNAG	9 cut(s)	52, 825, 1166, 1217, 1416, 1746, 1842, 1936, 1971
DpnI	GATC	5 cut(s)	239, 1414, 1491, 1533, 1644
DpnII	GATC	5 cut(s)	237, 1412, 1489, 1531, 1642
DraI	TTTAAA	2 cut(s)	1792, 1983
DrdI	GACNNNNNNGTC	2 cut(s)	56, 224
DseDI	GACNNNNNNGTC	2 cut(s)	56, 224
EaeI	YGGCCR	1 cut(s)	277
EciI	GGCGGA	1 cut(s)	467
Eco105I	TACGTA	1 cut(s)	1297
Eco130I	CCWWGG	2 cut(s)	280, 1228
Eco31I	GGTCTC	3 cut(s)	24, 104, 1086
Eco47I	GGWCC	7 cut(s)	76, 181, 271, 388, 593, 1232, 1670
Eco57I	CTGAAG	2 cut(s)	207, 1329
Eco81I	CCTNAGG	1 cut(s)	1746
Eco91I	GGTNACC	2 cut(s)	1091, 1137
EcoO109I	RGGNCCY	1 cut(s)	76
EcoO65I	GGTNACC	2 cut(s)	1091, 1137
EcoRII	CCWGG	4 cut(s)	78, 249, 1555, 1678
EcoT14I	CCWWGG	2 cut(s)	280, 1228
EcoT22I	ATGCAT	3 cut(s)	1276, 1576, 1945
ErhI	CCWWGG	2 cut(s)	280, 1228
FaeI	CATG	7 cut(s)	307, 839, 1232, 1399, 1436, 1877, 2005
FalI	AAGNNNNNCTT	4 cut(s)	1317, 1349, 1919, 1951
FatI	CATG	7 cut(s)	303, 835, 1228, 1395, 1432, 1873, 2001
FauI	CCCGC	1 cut(s)	1110
FauNDI	CATATG	1 cut(s)	627
FbaI	TGATCA	2 cut(s)	1489, 1531
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	5 cut(s)	143, 277, 312, 486, 1022
FokI	GGATG	4 cut(s)	538, 1283, 1561, 1736
Fsp4HI	GCNGC	5 cut(s)	143, 277, 312, 486, 1022
FspBI	CTAG	4 cut(s)	518, 534, 1733, 2026
FspI	TGCGCA	1 cut(s)	1394
GlaI	GCGC	5 cut(s)	141, 322, 969, 1020, 1394
GluI	GCNGC	5 cut(s)	143, 277, 312, 486, 1022
GsuI	CTGGAG	5 cut(s)	101, 272, 734, 978, 1510
HaeIII	GGCC	4 cut(s)	279, 302, 614, 1486
HapII	CCGG	5 cut(s)	36, 391, 800, 1341, 1400
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	5 cut(s)	142, 323, 970, 1021, 1395
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	7 cut(s)	307, 839, 1232, 1399, 1436, 1877, 2005
Hin6I	GCGC	5 cut(s)	140, 321, 968, 1019, 1393
HinP1I	GCGC	5 cut(s)	140, 321, 968, 1019, 1393
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HindIII	AAGCTT	2 cut(s)	576, 1928
HinfI	GANTC	4 cut(s)	32, 126, 200, 254
HpaII	CCGG	5 cut(s)	36, 391, 800, 1341, 1400
Hpy166II	GTNNAC	4 cut(s)	61, 339, 388, 1153
Hpy188III	TCNNGA	3 cut(s)	148, 328, 957
Hpy8I	GTNNAC	4 cut(s)	61, 339, 388, 1153
Hpy99I	CGWCG	5 cut(s)	62, 140, 221, 329, 334
HpyAV	CCTTC	3 cut(s)	966, 1124, 1588
HpyCH4III	ACNGT	8 cut(s)	181, 343, 1060, 1109, 1157, 1611, 1637, 2021
HpyCH4IV	ACGT	3 cut(s)	57, 1296, 1693
HpyF10VI	GCNNNNNNNGC	4 cut(s)	308, 320, 734, 1637
HpyF3I	CTNAG	9 cut(s)	52, 825, 1166, 1217, 1416, 1746, 1842, 1936, 1971
HpySE526I	ACGT	3 cut(s)	57, 1296, 1693
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	7 cut(s)	307, 839, 1232, 1399, 1436, 1877, 2005
HspAI	GCGC	5 cut(s)	140, 321, 968, 1019, 1393
Ksp22I	TGATCA	2 cut(s)	1489, 1531
KspI	CCGCGG	1 cut(s)	277
Kzo9I	GATC	5 cut(s)	237, 1412, 1489, 1531, 1642
LmnI	GCTCC	4 cut(s)	150, 435, 1558, 1866
Lsp1109I	GCAGC	1 cut(s)	472
LweI	GCATC	8 cut(s)	532, 1240, 1261, 1283, 1561, 1583, 1618, 1930
MaeI	CTAG	4 cut(s)	518, 534, 1733, 2026
MaeII	ACGT	3 cut(s)	57, 1296, 1693
MaeIII	GTNAC	8 cut(s)	95, 226, 1054, 1091, 1137, 1366, 1740, 2021
MalI	GATC	5 cut(s)	239, 1414, 1491, 1533, 1644
MbiI	CCGCTC	1 cut(s)	145
MboI	GATC	5 cut(s)	237, 1412, 1489, 1531, 1642
MboII	GAAGA	8 cut(s)	184, 187, 480, 1457, 1860, 1889, 1892, 1973
MflI	RGATCY	2 cut(s)	1412, 1642
MhlI	GDGCHC	5 cut(s)	341, 1216, 1548, 1607, 1772
MlyI	GAGTC	3 cut(s)	120, 209, 263
MmeI	TCCRAC	3 cut(s)	670, 1544, 1602
Mph1103I	ATGCAT	3 cut(s)	1276, 1576, 1945
MseI	TTAA	8 cut(s)	606, 633, 1146, 1239, 1335, 1791, 1889, 1982
MslI	CAYNNNNRTG	2 cut(s)	1227, 1437
MspA1I	CMGCKG	1 cut(s)	276
MspCI	CTTAAG	2 cut(s)	1238, 1334
MspI	CCGG	5 cut(s)	36, 391, 800, 1341, 1400
MspR9I	CCNGG	4 cut(s)	80, 251, 1557, 1680
Mva1269I	GAATGC	1 cut(s)	1804
MvaI	CCWGG	4 cut(s)	80, 251, 1557, 1680
MvnI	CGCG	6 cut(s)	70, 140, 276, 329, 970, 1021
MwoI	GCNNNNNNNGC	4 cut(s)	308, 320, 734, 1637
NcoI	CCATGG	1 cut(s)	1228
NdeI	CATATG	1 cut(s)	627
NdeII	GATC	5 cut(s)	237, 1412, 1489, 1531, 1642
NheI	GCTAGC	1 cut(s)	517
NlaIII	CATG	7 cut(s)	307, 839, 1232, 1399, 1436, 1877, 2005
NlaIV	GGNNCC	4 cut(s)	40, 77, 754, 873
NmuCI	GTSAC	7 cut(s)	95, 226, 1054, 1137, 1366, 1740, 2021
NruI	TCGCGA	1 cut(s)	329
NsbI	TGCGCA	1 cut(s)	1394
NsiI	ATGCAT	3 cut(s)	1276, 1576, 1945
NspI	RCATGY	2 cut(s)	1399, 2005
NspV	TTCGAA	1 cut(s)	1618
PaeI	GCATGC	1 cut(s)	1399
PciI	ACATGT	1 cut(s)	2001
PctI	GAATGC	1 cut(s)	1804
PfeI	GAWTC	1 cut(s)	32
PflFI	GACNNNGTC	1 cut(s)	16
PflMI	CCANNNNNTGG	1 cut(s)	1102
PfoI	TCCNGGA	2 cut(s)	78, 1555
PkrI	GCNGC	5 cut(s)	144, 278, 313, 487, 1023
PleI	GAGTC	3 cut(s)	120, 208, 262
PpsI	GAGTC	3 cut(s)	120, 208, 262
Ppu21I	YACGTR	1 cut(s)	1297
PpuMI	RGGWCCY	1 cut(s)	76
PscI	ACATGT	1 cut(s)	2001
PsiI	TTATAA	1 cut(s)	1386
Psp5II	RGGWCCY	1 cut(s)	76
Psp6I	CCWGG	4 cut(s)	78, 249, 1555, 1678
PspEI	GGTNACC	2 cut(s)	1091, 1137
PspGI	CCWGG	4 cut(s)	78, 249, 1555, 1678
PspN4I	GGNNCC	4 cut(s)	40, 77, 754, 873
PspPI	GGNCC	9 cut(s)	76, 181, 271, 388, 593, 612, 1232, 1484, 1670
PspPPI	RGGWCCY	1 cut(s)	76
PsuI	RGATCY	2 cut(s)	1412, 1642
PsyI	GACNNNGTC	1 cut(s)	16
RruI	TCGCGA	1 cut(s)	329
RsaI	GTAC	6 cut(s)	317, 374, 1356, 1453, 1702, 1872
RsaNI	GTAC	6 cut(s)	316, 373, 1355, 1452, 1701, 1871
RseI	CAYNNNNRTG	2 cut(s)	1227, 1437
SacII	CCGCGG	1 cut(s)	277
SalI	GTCGAC	1 cut(s)	59
SaqAI	TTAA	8 cut(s)	606, 633, 1146, 1239, 1335, 1791, 1889, 1982
SatI	GCNGC	5 cut(s)	143, 277, 312, 486, 1022
Sau3AI	GATC	5 cut(s)	237, 1412, 1489, 1531, 1642
Sau96I	GGNCC	9 cut(s)	76, 181, 271, 388, 593, 612, 1232, 1484, 1670
ScaI	AGTACT	1 cut(s)	1702
SchI	GAGTC	3 cut(s)	120, 209, 263
ScrFI	CCNGG	4 cut(s)	80, 251, 1557, 1680
SduI	GDGCHC	5 cut(s)	341, 1216, 1548, 1607, 1772
SfaNI	GCATC	8 cut(s)	532, 1240, 1261, 1283, 1561, 1583, 1618, 1930
SfcI	CTRYAG	1 cut(s)	1362
Sfr303I	CCGCGG	1 cut(s)	277
SfuI	TTCGAA	1 cut(s)	1618
SgrBI	CCGCGG	1 cut(s)	277
SinI	GGWCC	7 cut(s)	76, 181, 271, 388, 593, 1232, 1670
SmiMI	CAYNNNNRTG	2 cut(s)	1227, 1437
SmlI	CTYRAG	2 cut(s)	1238, 1334
SmoI	CTYRAG	2 cut(s)	1238, 1334
SnaBI	TACGTA	1 cut(s)	1297
SphI	GCATGC	1 cut(s)	1399
SspMI	CTAG	4 cut(s)	518, 534, 1733, 2026
StyD4I	CCNGG	4 cut(s)	78, 249, 1555, 1678
StyI	CCWWGG	2 cut(s)	280, 1228
TaaI	ACNGT	8 cut(s)	181, 343, 1060, 1109, 1157, 1611, 1637, 2021
TaiI	ACGT	3 cut(s)	60, 1299, 1696
TaqI	TCGA	8 cut(s)	60, 198, 243, 261, 509, 1618, 1675, 2006
TatI	WGTACW	3 cut(s)	372, 1354, 1700
TauI	GCSGC	4 cut(s)	145, 279, 314, 1024
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	8 cut(s)	606, 633, 1146, 1239, 1335, 1791, 1889, 1982
Tru9I	TTAA	8 cut(s)	606, 633, 1146, 1239, 1335, 1791, 1889, 1982
TscAI	CASTG	7 cut(s)	15, 591, 1312, 1486, 1534, 1818, 2024
TseFI	GTSAC	7 cut(s)	95, 226, 1054, 1137, 1366, 1740, 2021
TseI	GCWGC	1 cut(s)	485
Tsp45I	GTSAC	7 cut(s)	95, 226, 1054, 1137, 1366, 1740, 2021
TspDTI	ATGAA	5 cut(s)	542, 614, 723, 1766, 1890
TspGWI	ACGGA	7 cut(s)	83, 311, 347, 382, 1283, 1576, 1810
TspRI	CASTG	7 cut(s)	15, 591, 1312, 1486, 1534, 1818, 2024
Tth111I	GACNNNGTC	1 cut(s)	16
Van91I	CCANNNNNTGG	1 cut(s)	1102
Vha464I	CTTAAG	2 cut(s)	1238, 1334
VneI	GTGCAC	1 cut(s)	337
VpaK11BI	GGWCC	7 cut(s)	76, 181, 271, 388, 593, 1232, 1670
XapI	RAATTY	1 cut(s)	1197
XceI	RCATGY	2 cut(s)	1399, 2005
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	4 cut(s)	518, 534, 1733, 2026
ZraI	GACGTC	1 cut(s)	58
ZrmI	AGTACT	1 cut(s)	1702
Zsp2I	ATGCAT	3 cut(s)	1276, 1576, 1945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.