Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Reverse (-)

41868545 .. 41869904

Gene Structure 1360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0336700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTCCTCATCATTTTCTAACAATTACATTGAGCCAATAGGGTTACTTTTAGCATCTCCTTTCTCTCTTCCCAGCGTCCTCTGCCGTCAACGCATCCCAGCTCGAGAGATCGGTCTGTGCTCCGACTCGTTCTGTGCTCCGACAACTTCAAAGCTCGAGAGATCGCTCTGTGCTCCGACATCTTCAAAGCTCGAGAGATCGGTCTGTGCTCCGACTCGTTCTGTGCTCCGACAACTTCAAAGCTCGAGAGATCGGTCTGTGCTCCGACTCGATCTGTGCTCCGACATCTTCAAAGCTCGAGAGATCGGTTTGTGCTCCGACTCGCTCTGTGCTCCGACAACTTCAAAGCTCGAGAGATCGTTTTCTCTATATGCGTCCCCTGCAGAACAAGTAGTCACAAATCCAAACAAGAGCTGCGGCCCTGTTTCTATATTTGGTCGATTTGTGATGGGAAAGAAGAAATCCACCAATACTGAAAATGAGGGATCTGGAAAACCAAAAGCCACATGGCCTGATGAGGTAGTAGCTATATTTTGTGATATAGCTGTTAAGGAAGTGGCCAAGGGAAACAGACCTGGTACACATTTTGATAAAAAGGGATGGTCAAATGTTATCAAGGCCTTTAAGGAGTTAACCGGAAGGGATTATGATAAAAGGCAATTGAAAAATAAGTGGGATTCACTTAAAAATGATTGGAAATTGTGGAGTTCACTATTGCATAAGGAAACTGGTATTGGATGGGATCCGGCTAGGAAGACTGTCGATGCACCTGCTGAGTGGTGGGAATCCAAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

265

Amino Acids

29.5

Weight (kDa)

9.29

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	170 - 262	2.3e-23	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	778
Acc36I	ACCTGC	1 cut(s)	778
AciI	CCGC	1 cut(s)	417
AclWI	GGATC	3 cut(s)	493, 737, 750
AcoI	YGGCCR	1 cut(s)	558
AcsI	RAATTY	1 cut(s)	792
AfaI	GTAC	1 cut(s)	580
AgsI	TTSAA	6 cut(s)	150, 186, 239, 292, 345, 664
AjnI	CCWGG	1 cut(s)	574
AjuI	GAANNNNNNNTTGG	2 cut(s)	717, 749
AluBI	AGCT	9 cut(s)	101, 154, 190, 243, 296, 349, 414, 527, 545
AluI	AGCT	9 cut(s)	101, 154, 190, 243, 296, 349, 414, 527, 545
Alw21I	GWGCWC	9 cut(s)	122, 139, 175, 211, 228, 264, 281, 317, 334
AlwI	GGATC	3 cut(s)	493, 737, 750
Ama87I	CYCGRG	6 cut(s)	102, 155, 191, 244, 297, 350
AoxI	GGCC	4 cut(s)	418, 509, 558, 618
ApeKI	GCWGC	1 cut(s)	414
ApoI	RAATTY	1 cut(s)	792
AspS9I	GGNCC	1 cut(s)	419
AvaI	CYCGRG	6 cut(s)	102, 155, 191, 244, 297, 350
BalI	TGGCCA	1 cut(s)	560
BamHI	GGATCC	1 cut(s)	742
BbsI	GAAGAC	1 cut(s)	761
Bbv12I	GWGCWC	9 cut(s)	122, 139, 175, 211, 228, 264, 281, 317, 334
BbvI	GCAGC	1 cut(s)	401
BccI	CCATC	3 cut(s)	442, 594, 732
BceAI	ACGGC	1 cut(s)	69
BcgI	CGANNNNNNTGC	2 cut(s)	752, 786
BciT130I	CCWGG	1 cut(s)	576
BfaI	CTAG	1 cut(s)	750
BfmI	CTRYAG	1 cut(s)	381
BfuAI	ACCTGC	1 cut(s)	778
BisI	GCNGC	2 cut(s)	415, 418
BlsI	GCNGC	2 cut(s)	416, 419
Bme1390I	CCNGG	1 cut(s)	576
BmeT110I	CYCGRG	6 cut(s)	102, 155, 191, 244, 297, 350
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	1 cut(s)	744
BmrFI	CCNGG	1 cut(s)	576
BmsI	GCATC	3 cut(s)	62, 102, 754
BpiI	GAAGAC	1 cut(s)	761
BsaJI	CCNNGG	1 cut(s)	561
BsaWI	WCCGGW	1 cut(s)	635
Bse1I	ACTGG	1 cut(s)	733
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	3 cut(s)	93, 605, 743
BseMII	CTCAG	1 cut(s)	765
BseNI	ACTGG	1 cut(s)	733
BseXI	GCAGC	1 cut(s)	401
BseYI	CCCAGC	2 cut(s)	71, 97
BshFI	GGCC	4 cut(s)	420, 511, 560, 620
BsiHKAI	GWGCWC	9 cut(s)	122, 139, 175, 211, 228, 264, 281, 317, 334
BsiHKCI	CYCGRG	6 cut(s)	102, 155, 191, 244, 297, 350
BsiSI	CCGG	2 cut(s)	636, 746
BslFI	GGGAC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	361
BsnI	GGCC	4 cut(s)	420, 511, 560, 620
BsoBI	CYCGRG	6 cut(s)	102, 155, 191, 244, 297, 350
Bsp1286I	GDGCHC	9 cut(s)	122, 139, 175, 211, 228, 264, 281, 317, 334
Bsp143I	GATC	9 cut(s)	108, 161, 197, 250, 271, 303, 356, 485, 742
BspACI	CCGC	1 cut(s)	417
BspANI	GGCC	4 cut(s)	420, 511, 560, 620
BspCNI	CTCAG	1 cut(s)	766
BspLI	GGNNCC	1 cut(s)	744
BspMAI	CTGCAG	1 cut(s)	385
BspMI	ACCTGC	1 cut(s)	778
BspPI	GGATC	3 cut(s)	493, 737, 750
BsrI	ACTGG	1 cut(s)	733
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	9 cut(s)	108, 161, 197, 250, 271, 303, 356, 485, 742
BssT1I	CCWWGG	1 cut(s)	561
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	1 cut(s)	760
Bst6I	CTCTTC	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	774
BstF5I	GGATG	3 cut(s)	93, 605, 743
BstKTI	GATC	9 cut(s)	111, 164, 200, 253, 274, 306, 359, 488, 745
BstMBI	GATC	9 cut(s)	108, 161, 197, 250, 271, 303, 356, 485, 742
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 90, 380
BstNI	CCWGG	1 cut(s)	576
BstSCI	CCNGG	1 cut(s)	574
BstSFI	CTRYAG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	401
BstV2I	GAAGAC	1 cut(s)	761
BstX2I	RGATCY	2 cut(s)	485, 742
BstYI	RGATCY	2 cut(s)	485, 742
BsuRI	GGCC	4 cut(s)	420, 511, 560, 620
BtsCI	GGATG	3 cut(s)	93, 605, 743
BveI	ACCTGC	1 cut(s)	778
Cfr13I	GGNCC	1 cut(s)	419
CseI	GACGC	2 cut(s)	64, 363
CsiI	ACCWGGT	1 cut(s)	574
Csp6I	GTAC	1 cut(s)	579
CviAII	CATG	1 cut(s)	507
CviQI	GTAC	1 cut(s)	579
DdeI	CTNAG	1 cut(s)	774
DpnI	GATC	9 cut(s)	110, 163, 199, 252, 273, 305, 358, 487, 744
DpnII	GATC	9 cut(s)	108, 161, 197, 250, 271, 303, 356, 485, 742
EaeI	YGGCCR	1 cut(s)	558
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	561
Eco147I	AGGCCT	1 cut(s)	620
Eco88I	CYCGRG	6 cut(s)	102, 155, 191, 244, 297, 350
EcoRII	CCWGG	1 cut(s)	574
EcoT14I	CCWWGG	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	1 cut(s)	510
FaiI	YATR	8 cut(s)	370, 372, 431, 508, 530, 542, 648, 720
FaqI	GGGAC	1 cut(s)	361
FatI	CATG	1 cut(s)	506
Fnu4HI	GCNGC	2 cut(s)	415, 418
FokI	GGATG	3 cut(s)	80, 612, 750
Fsp4HI	GCNGC	2 cut(s)	415, 418
FspBI	CTAG	1 cut(s)	750
GluI	GCNGC	2 cut(s)	415, 418
GsaI	CCCAGC	2 cut(s)	75, 101
HaeIII	GGCC	4 cut(s)	420, 511, 560, 620
HapII	CCGG	2 cut(s)	636, 746
HgaI	GACGC	2 cut(s)	64, 363
Hin1II	CATG	1 cut(s)	510
HincII	GTYRAC	2 cut(s)	89, 633
HindII	GTYRAC	2 cut(s)	89, 633
HinfI	GANTC	6 cut(s)	125, 214, 267, 320, 677, 785
HpaI	GTTAAC	1 cut(s)	633
HpaII	CCGG	2 cut(s)	636, 746
Hpy166II	GTNNAC	4 cut(s)	89, 581, 633, 710
Hpy188I	TCNGA	9 cut(s)	124, 141, 177, 213, 230, 266, 283, 319, 336
Hpy188III	TCNNGA	7 cut(s)	104, 157, 193, 246, 299, 352, 489
Hpy8I	GTNNAC	4 cut(s)	89, 581, 633, 710
HpyAV	CCTTC	1 cut(s)	633
HpyCH4III	ACNGT	1 cut(s)	760
HpyCH4V	TGCA	3 cut(s)	383, 718, 767
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 90, 380
HpyF3I	CTNAG	1 cut(s)	774
Hsp92II	CATG	1 cut(s)	510
KspAI	GTTAAC	1 cut(s)	633
Kzo9I	GATC	9 cut(s)	108, 161, 197, 250, 271, 303, 356, 485, 742
LmnI	GCTCC	9 cut(s)	125, 142, 178, 214, 231, 267, 284, 320, 337
Lsp1109I	GCAGC	1 cut(s)	401
LweI	GCATC	3 cut(s)	62, 102, 754
MabI	ACCWGGT	1 cut(s)	574
MaeI	CTAG	1 cut(s)	750
MaeIII	GTNAC	2 cut(s)	42, 394
MalI	GATC	9 cut(s)	110, 163, 199, 252, 273, 305, 358, 487, 744
MboI	GATC	9 cut(s)	108, 161, 197, 250, 271, 303, 356, 485, 742
MboII	GAAGA	5 cut(s)	59, 174, 280, 469, 766
MfeI	CAATTG	1 cut(s)	659
MflI	RGATCY	2 cut(s)	485, 742
MhlI	GDGCHC	9 cut(s)	122, 139, 175, 211, 228, 264, 281, 317, 334
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	4 cut(s)	22, 659, 698, 792
MluNI	TGGCCA	1 cut(s)	560
MlyI	GAGTC	4 cut(s)	119, 208, 261, 314
MmeI	TCCRAC	9 cut(s)	147, 164, 200, 236, 253, 289, 306, 342, 359
MnlI	CCTC	4 cut(s)	16, 89, 475, 511
Mox20I	TGGCCA	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	560
MseI	TTAA	4 cut(s)	549, 624, 632, 684
Msp20I	TGGCCA	1 cut(s)	560
MspI	CCGG	2 cut(s)	636, 746
MspR9I	CCNGG	1 cut(s)	576
MunI	CAATTG	1 cut(s)	659
MvaI	CCWGG	1 cut(s)	576
MwoI	GCNNNNNNNGC	3 cut(s)	81, 90, 380
NdeII	GATC	9 cut(s)	108, 161, 197, 250, 271, 303, 356, 485, 742
NlaIII	CATG	1 cut(s)	510
NlaIV	GGNNCC	1 cut(s)	744
NmuCI	GTSAC	1 cut(s)	394
PaeR7I	CTCGAG	6 cut(s)	102, 155, 191, 244, 297, 350
PaqCI	CACCTGC	1 cut(s)	778
PceI	AGGCCT	1 cut(s)	620
PfeI	GAWTC	2 cut(s)	677, 785
PkrI	GCNGC	2 cut(s)	416, 419
PleI	GAGTC	4 cut(s)	119, 208, 261, 314
PpsI	GAGTC	4 cut(s)	119, 208, 261, 314
Psp6I	CCWGG	1 cut(s)	574
PspFI	CCCAGC	2 cut(s)	71, 97
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	1 cut(s)	744
PspPI	GGNCC	1 cut(s)	419
PstI	CTGCAG	1 cut(s)	385
PsuI	RGATCY	2 cut(s)	485, 742
RsaI	GTAC	1 cut(s)	580
RsaNI	GTAC	1 cut(s)	579
SaqAI	TTAA	4 cut(s)	549, 624, 632, 684
SatI	GCNGC	2 cut(s)	415, 418
Sau3AI	GATC	9 cut(s)	108, 161, 197, 250, 271, 303, 356, 485, 742
Sau96I	GGNCC	1 cut(s)	419
SchI	GAGTC	4 cut(s)	119, 208, 261, 314
ScrFI	CCNGG	1 cut(s)	576
SduI	GDGCHC	9 cut(s)	122, 139, 175, 211, 228, 264, 281, 317, 334
SexAI	ACCWGGT	1 cut(s)	574
SfaNI	GCATC	3 cut(s)	62, 102, 754
SfcI	CTRYAG	1 cut(s)	381
Sfr274I	CTCGAG	6 cut(s)	102, 155, 191, 244, 297, 350
SlaI	CTCGAG	6 cut(s)	102, 155, 191, 244, 297, 350
SmlI	CTYRAG	6 cut(s)	102, 155, 191, 244, 297, 350
SmoI	CTYRAG	6 cut(s)	102, 155, 191, 244, 297, 350
Sse9I	AATT	4 cut(s)	22, 659, 698, 792
SseBI	AGGCCT	1 cut(s)	620
SsiI	CCGC	1 cut(s)	417
SspMI	CTAG	1 cut(s)	750
StuI	AGGCCT	1 cut(s)	620
StyD4I	CCNGG	1 cut(s)	574
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	1 cut(s)	760
TaqI	TCGA	9 cut(s)	103, 156, 192, 245, 270, 298, 351, 439, 762
TaqII	GACCGA	3 cut(s)	101, 190, 243
TasI	AATT	4 cut(s)	22, 659, 698, 792
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	2 cut(s)	677, 785
Tru1I	TTAA	4 cut(s)	549, 624, 632, 684
Tru9I	TTAA	4 cut(s)	549, 624, 632, 684
TseFI	GTSAC	1 cut(s)	394
TseI	GCWGC	1 cut(s)	414
Tsp45I	GTSAC	1 cut(s)	394
XapI	RAATTY	1 cut(s)	792
XcmI	CCANNNNNNNNNTGG	1 cut(s)	504
XhoI	CTCGAG	6 cut(s)	102, 155, 191, 244, 297, 350
XspI	CTAG	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.